Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08988 * 109.47685 * 2 1 4 4 C 1.50702 * 109.46980 * 239.99725 * 2 1 3 5 5 H 1.08006 * 119.99732 * 240.00593 * 4 2 1 6 6 C 1.37874 * 120.00294 * 60.00586 * 4 2 1 7 7 N 1.31518 * 119.99612 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46910 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47308 * 119.99476 * 8 6 4 11 11 H 1.48495 * 109.47124 * 240.00039 * 8 6 4 12 12 N 1.46499 * 109.46780 * 120.00227 * 2 1 3 13 13 C 1.34778 * 120.00079 * 274.99492 * 12 2 1 14 14 O 1.21282 * 119.99419 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00490 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46930 * 300.00028 * 15 13 12 17 17 C 1.52996 * 109.47417 * 59.99890 * 15 13 12 18 18 N 1.46900 * 109.47708 * 185.01020 * 17 15 13 19 19 C 1.53003 * 109.47316 * 180.02562 * 15 13 12 20 20 C 1.52997 * 109.47082 * 65.90487 * 19 15 13 21 21 C 1.52996 * 117.50023 * 243.31701 * 20 19 15 22 22 C 1.52998 * 117.49726 * 174.65699 * 20 19 15 23 23 H 1.09002 * 109.47072 * 60.00155 * 1 2 3 24 24 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46914 * 300.00452 * 1 2 3 26 26 H 0.97002 * 119.99582 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00366 * 94.99807 * 12 2 1 28 28 H 1.08999 * 109.47080 * 305.01243 * 17 15 13 29 29 H 1.09004 * 109.47224 * 65.00935 * 17 15 13 30 30 H 1.00906 * 110.99701 * 56.04720 * 18 17 15 31 31 H 1.00893 * 111.00059 * 180.02562 * 18 17 15 32 32 H 1.09008 * 109.46708 * 185.90470 * 19 15 13 33 33 H 1.08998 * 109.46971 * 305.90580 * 19 15 13 34 34 H 1.09004 * 115.55367 * 28.99585 * 20 19 15 35 35 H 1.09007 * 117.49491 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.50093 * 145.02077 * 21 20 19 37 37 H 1.09002 * 117.50331 * 214.97739 * 22 20 19 38 38 H 1.09003 * 117.49790 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2873 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1877 -4.8165 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1583 2.4116 15 6 2.6498 -0.7286 3.5875 16 1 1.9775 -1.5508 3.8325 17 6 4.0524 -1.2787 3.3215 18 7 4.4942 -2.0725 4.4758 19 6 2.7006 0.2544 4.7589 20 6 1.2795 0.6913 5.1200 21 6 0.9310 2.1715 4.9511 22 6 1.1057 1.5810 6.3525 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7083 1.1608 -3.4845 27 1 2.2489 -1.6318 1.1526 28 1 4.0328 -1.9095 2.4328 29 1 4.7436 -0.4506 3.1640 30 1 3.8353 -2.8083 4.6822 31 1 5.4189 -2.4467 4.3247 32 1 3.1617 -0.2299 5.6198 33 1 3.2881 1.1276 4.4752 34 1 0.4961 -0.0372 4.9108 35 1 1.7142 2.8339 4.5823 36 1 -0.0816 2.4168 4.6310 37 1 0.2079 1.4382 6.9539 38 1 2.0038 1.8547 6.9063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404861539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = -30.533919 kcal Electronic energy + Delta-G solvation = -17731.336373 eV Core-core repulsion = 14994.791065 eV Total energy + Delta-G solvation = -2736.545308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36966 -37.00529 -35.30295 -34.67196 -32.29408 -30.92054 -28.81106 -25.70838 -25.23848 -22.64676 -21.98323 -20.70688 -20.07470 -19.17013 -17.39476 -16.02938 -15.63963 -15.22127 -15.03789 -14.64046 -14.37929 -13.73552 -13.48946 -13.26471 -12.78811 -12.37067 -12.20099 -11.65555 -11.57923 -11.21796 -11.07644 -11.02884 -10.93339 -10.74487 -10.62719 -10.28964 -10.23832 -9.84856 -9.59114 -9.02706 -8.82313 -8.68969 -8.52875 -7.83246 -6.12293 -4.21414 3.22516 3.30267 3.32606 3.46986 4.11930 4.19885 4.37404 4.63185 4.85443 5.11668 5.19953 5.24662 5.28925 5.39225 5.55997 5.63413 5.76684 5.88455 5.92758 6.11987 6.30508 6.35618 6.38785 6.51143 6.68468 6.84722 6.99312 7.01323 7.18071 7.33985 7.51338 7.59783 7.71476 7.94036 8.16933 8.72419 8.81179 9.21546 9.47049 10.93652 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.006102 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.917213 B = 4587.828656 C = 5352.004559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.713 5.713 13 C 0.502 3.498 14 O -0.539 6.539 15 C -0.105 4.105 16 H 0.086 0.914 17 C 0.069 3.931 18 N -0.847 5.847 19 C -0.058 4.058 20 C -0.139 4.139 21 C -0.151 4.151 22 C -0.196 4.196 23 H 0.089 0.911 24 H 0.024 0.976 25 H 0.014 0.986 26 H 0.263 0.737 27 H 0.385 0.615 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.339 0.661 31 H 0.341 0.659 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -5.056 12.904 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.361 5.361 13 C 0.286 3.714 14 O -0.417 6.417 15 C -0.127 4.127 16 H 0.104 0.896 17 C -0.062 4.062 18 N -0.377 5.377 19 C -0.096 4.096 20 C -0.157 4.157 21 C -0.188 4.188 22 C -0.234 4.234 23 H 0.107 0.893 24 H 0.043 0.957 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.217 0.783 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.034 -3.377 13.164 13.925 hybrid contribution 0.303 -1.796 -1.708 2.497 sum 3.337 -5.173 11.456 13.005 Atomic orbital electron populations 1.22063 0.98641 0.98931 1.00825 1.18691 0.90900 0.93946 0.80154 0.93452 1.21261 1.32262 1.13089 0.90437 0.92217 1.24892 0.94851 0.94961 0.99046 1.69920 1.35947 1.22516 1.23708 0.86414 0.78598 0.79513 0.82677 1.19812 1.20882 1.20875 1.46556 1.65495 1.13339 1.10696 1.20332 0.78909 0.87672 0.84474 1.90654 1.50545 1.15772 1.84715 1.21428 0.96767 0.99257 0.95215 0.89590 1.21734 0.95635 0.97556 0.91256 1.58709 1.07139 1.30257 1.41604 1.20876 0.94429 0.98059 0.96193 1.22133 0.98237 0.94298 1.01034 1.22791 1.02418 0.96423 0.97132 1.23017 1.02410 1.06512 0.91412 0.89290 0.95675 0.96653 0.92665 0.78347 0.94647 0.90477 0.84912 0.84656 0.90439 0.91542 0.88969 0.88778 0.89716 0.89690 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.40 7.58 -51.94 -0.39 1.00 16 4 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.71 -14.68 4.93 -54.94 -0.27 -14.95 16 13 C 0.50 9.78 6.88 -10.99 -0.08 9.70 16 14 O -0.54 -12.39 13.69 5.56 0.08 -12.31 16 15 C -0.10 -1.51 2.29 -91.78 -0.21 -1.72 16 16 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 17 C 0.07 0.87 6.12 -3.83 -0.02 0.84 16 18 N -0.85 -8.34 8.98 -10.37 -0.09 -8.43 16 19 C -0.06 -0.83 4.56 -26.73 -0.12 -0.95 16 20 C -0.14 -2.04 4.76 -90.62 -0.43 -2.47 16 21 C -0.15 -2.33 8.97 -26.70 -0.24 -2.57 16 22 C -0.20 -2.51 10.25 -26.70 -0.27 -2.78 16 23 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.38 6.94 7.90 -40.82 -0.32 6.62 16 28 H 0.04 0.44 7.43 -51.93 -0.39 0.06 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.34 2.88 8.99 -39.29 -0.35 2.52 16 31 H 0.34 2.79 9.08 -39.30 -0.36 2.44 16 32 H 0.08 1.01 7.60 -51.92 -0.39 0.61 16 33 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 34 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.09 1.55 8.03 -51.92 -0.42 1.13 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -29.74 310.90 -7.85 -37.60 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.25 Total: 11.59 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.60 Total: -9.42 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.26 Total: -47.76 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.74 -7.85 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404861539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.063 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds