Wall clock time and date at job start Mon Mar 30 2020 03:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08988 * 109.47685 * 2 1 4 4 C 1.50702 * 109.46980 * 239.99725 * 2 1 3 5 5 H 1.08006 * 119.99732 * 240.00593 * 4 2 1 6 6 C 1.37874 * 120.00294 * 60.00586 * 4 2 1 7 7 N 1.31518 * 119.99612 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00458 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46910 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47308 * 119.99476 * 8 6 4 11 11 H 1.48495 * 109.47124 * 240.00039 * 8 6 4 12 12 N 1.46499 * 109.46780 * 120.00227 * 2 1 3 13 13 C 1.34778 * 120.00079 * 274.99492 * 12 2 1 14 14 O 1.21282 * 119.99419 * 0.02562 * 13 12 2 15 15 C 1.50694 * 120.00490 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46930 * 300.00028 * 15 13 12 17 17 C 1.52996 * 109.47417 * 59.99890 * 15 13 12 18 18 N 1.46900 * 109.47708 * 185.01020 * 17 15 13 19 19 C 1.53003 * 109.47316 * 180.02562 * 15 13 12 20 20 C 1.52997 * 109.47082 * 65.90487 * 19 15 13 21 21 C 1.52996 * 117.50023 * 243.31701 * 20 19 15 22 22 C 1.52998 * 117.49726 * 174.65699 * 20 19 15 23 23 H 1.09002 * 109.47072 * 60.00155 * 1 2 3 24 24 H 1.09002 * 109.47447 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46914 * 300.00452 * 1 2 3 26 26 H 0.97002 * 119.99582 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00366 * 94.99807 * 12 2 1 28 28 H 1.08999 * 109.47080 * 305.01243 * 17 15 13 29 29 H 1.09004 * 109.47224 * 65.00935 * 17 15 13 30 30 H 1.00906 * 110.99701 * 56.04720 * 18 17 15 31 31 H 1.00893 * 111.00059 * 180.02562 * 18 17 15 32 32 H 1.09008 * 109.46708 * 185.90470 * 19 15 13 33 33 H 1.08998 * 109.46971 * 305.90580 * 19 15 13 34 34 H 1.09004 * 115.55367 * 28.99585 * 20 19 15 35 35 H 1.09007 * 117.49491 * 0.02562 * 21 20 19 36 36 H 1.09001 * 117.50093 * 145.02077 * 21 20 19 37 37 H 1.09002 * 117.50331 * 214.97739 * 22 20 19 38 38 H 1.09003 * 117.49790 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2873 -3.6037 10 1 1.1660 -1.5868 -4.8160 11 1 3.1466 -0.1877 -4.8165 12 7 2.0182 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8582 1.1583 2.4116 15 6 2.6498 -0.7286 3.5875 16 1 1.9775 -1.5508 3.8325 17 6 4.0524 -1.2787 3.3215 18 7 4.4942 -2.0725 4.4758 19 6 2.7006 0.2544 4.7589 20 6 1.2795 0.6913 5.1200 21 6 0.9310 2.1715 4.9511 22 6 1.1057 1.5810 6.3525 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7083 1.1608 -3.4845 27 1 2.2489 -1.6318 1.1526 28 1 4.0328 -1.9095 2.4328 29 1 4.7436 -0.4506 3.1640 30 1 3.8353 -2.8083 4.6822 31 1 5.4189 -2.4467 4.3247 32 1 3.1617 -0.2299 5.6198 33 1 3.2881 1.1276 4.4752 34 1 0.4961 -0.0372 4.9108 35 1 1.7142 2.8339 4.5823 36 1 -0.0816 2.4168 4.6310 37 1 0.2079 1.4382 6.9539 38 1 2.0038 1.8547 6.9063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404861539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:38 Heat of formation + Delta-G solvation = -51.518567 kcal Electronic energy + Delta-G solvation = -17732.246336 eV Core-core repulsion = 14994.791065 eV Total energy + Delta-G solvation = -2737.455271 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89042 -38.30415 -36.62125 -36.32663 -34.21856 -32.07854 -30.66017 -27.35857 -26.85607 -24.07611 -23.12582 -22.28942 -21.39152 -20.77186 -19.00448 -17.69051 -17.21943 -16.60964 -16.31885 -16.18154 -15.53449 -15.18053 -14.91467 -14.65435 -14.40031 -13.92257 -13.76428 -13.37268 -12.94346 -12.88175 -12.78125 -12.65607 -12.31316 -12.28191 -12.18669 -12.11400 -11.83101 -11.09116 -10.97639 -10.83137 -10.63712 -10.30843 -9.66587 -9.54178 -8.17998 -6.35445 1.43076 1.43986 1.55888 1.92470 2.35921 2.68948 3.04964 3.12539 3.60845 3.72819 4.00167 4.10156 4.17076 4.22785 4.35230 4.51683 4.60140 4.75651 4.83525 4.85952 4.91851 4.95898 5.10839 5.16028 5.19596 5.25459 5.34629 5.45527 5.51017 5.63998 5.71799 5.93377 6.11672 6.21565 6.67799 6.73786 7.05334 7.33234 7.65862 8.88460 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028981 B = 0.006102 C = 0.005230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.917213 B = 4587.828656 C = 5352.004559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.709 5.709 13 C 0.497 3.503 14 O -0.579 6.579 15 C -0.091 4.091 16 H 0.111 0.889 17 C 0.078 3.922 18 N -0.842 5.842 19 C -0.050 4.050 20 C -0.149 4.149 21 C -0.178 4.178 22 C -0.164 4.164 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.011 0.989 26 H 0.265 0.735 27 H 0.400 0.600 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.351 0.649 31 H 0.354 0.646 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -7.495 14.020 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.210 1.210 12 N -0.358 5.358 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.113 4.113 16 H 0.129 0.871 17 C -0.054 4.054 18 N -0.375 5.375 19 C -0.088 4.088 20 C -0.167 4.167 21 C -0.215 4.215 22 C -0.201 4.201 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.235 0.765 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.936 -5.863 14.314 15.960 hybrid contribution 0.022 -0.982 -2.010 2.237 sum 3.958 -6.844 12.304 14.625 Atomic orbital electron populations 1.21878 0.98599 0.99219 0.99377 1.18266 0.90874 0.91834 0.82186 0.98587 1.21580 1.32353 1.13395 0.90881 0.90993 1.25813 0.94914 0.95587 1.02378 1.70071 1.37128 1.24064 1.24476 0.85297 0.78077 0.78520 0.78428 1.18301 1.20467 1.21022 1.46310 1.65690 1.13978 1.09843 1.21261 0.77695 0.87356 0.85348 1.90649 1.51948 1.17826 1.85427 1.21363 0.98322 0.99388 0.92193 0.87122 1.21541 0.93842 0.97526 0.92487 1.58607 1.08190 1.30762 1.39897 1.20833 0.94023 0.97252 0.96680 1.22228 0.98391 0.93557 1.02558 1.22713 1.01232 0.97200 1.00389 1.23084 1.03719 1.03219 0.90071 0.91754 0.94289 0.97028 0.92621 0.76515 0.94351 0.92026 0.83567 0.83203 0.88217 0.93806 0.89036 0.90782 0.90772 0.87780 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 2 C 0.27 14.18 2.56 44.24 0.11 14.29 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.54 -28.80 8.73 25.60 0.22 -28.58 16 5 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 8 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.71 -29.09 4.93 -446.12 -2.20 -31.29 16 13 C 0.50 19.40 6.88 87.65 0.60 20.01 16 14 O -0.58 -27.58 13.69 -3.04 -0.04 -27.62 16 15 C -0.09 -2.47 2.29 -11.54 -0.03 -2.49 16 16 H 0.11 2.53 8.13 -2.39 -0.02 2.51 16 17 C 0.08 1.78 6.12 86.30 0.53 2.31 16 18 N -0.84 -13.80 8.98 -186.72 -1.68 -15.48 16 19 C -0.05 -1.36 4.56 30.59 0.14 -1.22 16 20 C -0.15 -4.21 4.76 -10.80 -0.05 -4.27 16 21 C -0.18 -5.61 8.97 30.62 0.27 -5.34 16 22 C -0.16 -3.87 10.25 30.62 0.31 -3.55 16 23 H 0.06 3.63 6.07 -2.39 -0.01 3.61 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.40 13.86 7.90 -92.71 -0.73 13.13 16 28 H 0.04 0.86 7.43 -2.39 -0.02 0.84 16 29 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.35 4.57 8.99 -89.69 -0.81 3.76 16 31 H 0.35 4.63 9.08 -89.70 -0.81 3.82 16 32 H 0.10 2.29 7.60 -2.38 -0.02 2.27 16 33 H 0.04 1.39 7.65 -2.39 -0.02 1.37 16 34 H 0.09 2.60 8.07 -2.38 -0.02 2.58 16 35 H 0.07 2.59 8.03 -2.38 -0.02 2.57 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -65.94 310.90 0.30 -65.64 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: -1.29 Total: 31.47 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 3.23 Total: -13.82 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -3.63 Total: -99.71 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.04 Total: -27.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.94 0.30 -65.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404861539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.125 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds