Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.46900 * 2 1 4 4 C 1.50699 * 109.46885 * 239.99848 * 2 1 3 5 5 H 1.07994 * 120.00089 * 239.99861 * 4 2 1 6 6 C 1.37877 * 120.00067 * 60.00317 * 4 2 1 7 7 N 1.31522 * 119.99790 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46744 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47275 * 119.99920 * 8 6 4 11 11 H 1.48494 * 109.47210 * 240.00258 * 8 6 4 12 12 N 1.46502 * 109.46726 * 120.00096 * 2 1 3 13 13 C 1.34767 * 119.99877 * 274.99905 * 12 2 1 14 14 O 1.21279 * 120.00511 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99975 * 180.02562 * 13 12 2 16 16 H 1.09008 * 109.46953 * 60.00161 * 15 13 12 17 17 C 1.52993 * 109.47270 * 300.00004 * 15 13 12 18 18 N 1.46905 * 109.47039 * 64.99898 * 17 15 13 19 19 C 1.53002 * 109.47385 * 179.97438 * 15 13 12 20 20 C 1.52997 * 109.47440 * 185.00255 * 19 15 13 21 21 C 1.53000 * 117.49694 * 243.62619 * 20 19 15 22 22 C 1.52995 * 117.49941 * 175.00449 * 20 19 15 23 23 H 1.08998 * 109.46963 * 299.99890 * 1 2 3 24 24 H 1.08999 * 109.46639 * 59.99947 * 1 2 3 25 25 H 1.09006 * 109.46958 * 179.97438 * 1 2 3 26 26 H 0.97002 * 119.99268 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99511 * 95.00653 * 12 2 1 28 28 H 1.09001 * 109.47393 * 305.00180 * 17 15 13 29 29 H 1.08998 * 109.47408 * 184.99825 * 17 15 13 30 30 H 1.00901 * 110.99869 * 56.04956 * 18 17 15 31 31 H 1.00896 * 110.99543 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47125 * 305.00587 * 19 15 13 33 33 H 1.09002 * 109.46895 * 65.00236 * 19 15 13 34 34 H 1.09003 * 115.55217 * 29.32775 * 20 19 15 35 35 H 1.09003 * 117.50388 * 359.97438 * 21 20 19 36 36 H 1.09001 * 117.49910 * 145.02140 * 21 20 19 37 37 H 1.09007 * 117.49973 * 214.97731 * 22 20 19 38 38 H 1.08997 * 117.50282 * 359.97275 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8161 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8582 1.1583 2.4117 15 6 2.6498 -0.7286 3.5874 16 1 3.6492 -1.1204 3.3979 17 6 1.7063 -1.8828 3.9314 18 7 1.7484 -2.8860 2.8590 19 6 2.7017 0.2546 4.7586 20 6 3.3284 -0.4322 5.9737 21 6 2.4509 -0.6122 7.2140 22 6 3.5777 0.4227 7.2178 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7082 1.1608 -3.4844 27 1 2.2491 -1.6318 1.1525 28 1 0.6897 -1.5030 4.0338 29 1 2.0192 -2.3407 4.8697 30 1 2.6920 -3.2067 2.7008 31 1 1.1328 -3.6589 3.0626 32 1 3.3031 1.1200 4.4800 33 1 1.6909 0.5789 5.0058 34 1 4.0506 -1.2173 5.7495 35 1 1.4272 -0.2410 7.1645 36 1 2.5956 -1.5159 7.8060 37 1 4.4638 0.1999 7.8123 38 1 3.2957 1.4745 7.1705 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404861540.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -52.992489 kcal Electronic energy + Delta-G solvation = -17629.816035 eV Core-core repulsion = 14892.296850 eV Total energy + Delta-G solvation = -2737.519185 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83733 -38.55587 -36.61771 -36.16483 -34.09645 -32.24116 -30.67426 -27.32257 -26.50294 -24.41064 -23.13383 -22.46989 -21.19471 -20.78896 -18.78812 -17.51936 -17.19021 -16.71181 -16.25353 -16.07861 -15.85813 -15.35053 -15.01014 -14.44691 -14.25833 -14.04790 -13.60642 -13.45202 -13.00066 -12.83797 -12.78522 -12.59630 -12.34234 -12.24066 -12.12206 -12.07533 -11.99398 -11.15199 -11.04859 -10.76230 -10.61167 -10.44559 -9.54863 -9.46830 -8.13846 -6.31013 1.45940 1.46198 1.59192 1.97016 2.40046 2.77013 2.97048 3.16029 3.52618 3.80305 3.94035 4.08689 4.16336 4.24073 4.24619 4.53673 4.66601 4.70257 4.81480 4.84339 4.89714 4.97013 5.08843 5.12659 5.14182 5.18163 5.32143 5.44128 5.48929 5.68520 5.79476 6.02783 6.16655 6.29130 6.69596 6.78348 7.19133 7.37744 7.78670 8.92946 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042691 B = 0.005140 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.720441 B = 5445.871218 C = 5649.082366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.266 3.734 3 H -0.009 1.009 4 C -0.540 4.540 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.279 1.279 11 H -0.284 1.284 12 N -0.686 5.686 13 C 0.497 3.503 14 O -0.618 6.618 15 C -0.093 4.093 16 H 0.111 0.889 17 C 0.085 3.915 18 N -0.863 5.863 19 C -0.062 4.062 20 C -0.152 4.152 21 C -0.173 4.173 22 C -0.184 4.184 23 H 0.005 0.995 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.411 0.589 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.351 0.649 31 H 0.358 0.642 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -9.809 16.582 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.162 3.838 3 H 0.008 0.992 4 C -0.579 4.579 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.337 5.337 13 C 0.284 3.716 14 O -0.502 6.502 15 C -0.115 4.115 16 H 0.129 0.871 17 C -0.046 4.046 18 N -0.397 5.397 19 C -0.101 4.101 20 C -0.170 4.170 21 C -0.210 4.210 22 C -0.221 4.221 23 H 0.024 0.976 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.251 0.749 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.282 -8.342 15.991 18.537 hybrid contribution 0.353 -0.667 -0.395 0.852 sum 4.635 -9.009 15.596 18.598 Atomic orbital electron populations 1.21829 0.98646 0.99122 0.98957 1.18310 0.91022 0.91661 0.82784 0.99152 1.21564 1.32224 1.13275 0.90804 0.91012 1.25851 0.94946 0.95623 1.02420 1.70087 1.37281 1.24168 1.24399 0.85258 0.78073 0.78513 0.78231 1.18203 1.20425 1.20986 1.46361 1.63812 1.14665 1.08814 1.21318 0.77606 0.86651 0.86012 1.90600 1.54449 1.18915 1.86232 1.21393 1.01583 0.96838 0.91647 0.87102 1.21588 0.98222 0.91234 0.93565 1.58476 1.15304 1.19005 1.46878 1.20815 1.00474 0.96547 0.92240 1.22256 1.03360 1.02837 0.88597 1.23107 0.95903 1.01463 1.00557 1.23042 1.01161 0.96935 1.00970 0.97567 0.91792 0.94279 0.92675 0.74916 0.92700 0.91030 0.83497 0.82719 0.92847 0.92804 0.86213 0.89407 0.87151 0.87342 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.99 0.67 -6.21 16 2 C 0.27 14.70 2.56 44.25 0.11 14.81 16 3 H -0.01 -0.61 7.58 -2.39 -0.02 -0.63 16 4 C -0.54 -29.84 8.73 25.60 0.22 -29.61 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -54.63 11.32 21.45 0.24 -54.38 16 8 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.69 -30.48 4.78 -446.10 -2.13 -32.61 16 13 C 0.50 21.08 7.12 87.66 0.62 21.71 16 14 O -0.62 -32.34 15.58 -3.03 -0.05 -32.39 16 15 C -0.09 -2.60 2.36 -11.54 -0.03 -2.63 16 16 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 17 C 0.08 1.88 6.06 86.30 0.52 2.41 16 18 N -0.86 -17.91 7.24 -186.72 -1.35 -19.26 16 19 C -0.06 -1.67 4.31 30.59 0.13 -1.54 16 20 C -0.15 -2.82 4.65 -10.80 -0.05 -2.87 16 21 C -0.17 -2.74 10.18 30.59 0.31 -2.43 16 22 C -0.18 -3.12 10.25 30.59 0.31 -2.81 16 23 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.06 3.75 6.07 -2.39 -0.01 3.73 16 25 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.41 15.84 6.43 -92.71 -0.60 15.24 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.15 7.23 -2.39 -0.02 1.13 16 30 H 0.35 5.90 8.96 -89.69 -0.80 5.10 16 31 H 0.36 5.88 9.08 -89.70 -0.81 5.07 16 32 H 0.05 1.67 7.96 -2.39 -0.02 1.65 16 33 H 0.05 1.60 7.88 -2.39 -0.02 1.58 16 34 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 35 H 0.09 1.51 8.03 -2.39 -0.02 1.49 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -71.22 310.89 0.87 -70.36 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -1.15 Total: 31.36 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 3.28 Total: -8.12 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.24 Total: -106.25 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.05 Total: -32.39 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -71.22 0.87 -70.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404861540.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.366 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds