Wall clock time and date at job start Mon Mar 30 2020 03:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47319 * 2 1 4 4 C 1.50708 * 109.47015 * 120.00292 * 2 1 3 5 5 H 1.07994 * 120.00293 * 119.99931 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99603 * 4 2 1 7 7 N 1.31514 * 119.99614 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00152 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46771 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46861 * 119.99829 * 8 6 4 11 11 H 1.48490 * 109.47485 * 239.99984 * 8 6 4 12 12 N 1.46503 * 109.47127 * 239.99544 * 2 1 3 13 13 C 1.34776 * 119.99477 * 85.00260 * 12 2 1 14 14 O 1.21281 * 120.00458 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99831 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47576 * 300.00436 * 15 13 12 17 17 C 1.53005 * 109.47254 * 60.00276 * 15 13 12 18 18 N 1.46893 * 109.47395 * 183.37096 * 17 15 13 19 19 C 1.53001 * 109.47323 * 179.97438 * 15 13 12 20 20 C 1.52999 * 109.46974 * 66.30190 * 19 15 13 21 21 C 1.53004 * 117.50035 * 242.70591 * 20 19 15 22 22 C 1.52999 * 117.49995 * 174.04530 * 20 19 15 23 23 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47503 * 60.00018 * 1 2 3 25 25 H 1.09002 * 109.47521 * 300.00106 * 1 2 3 26 26 H 0.97010 * 119.99545 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00503 * 265.00510 * 12 2 1 28 28 H 1.09008 * 109.46691 * 303.37473 * 17 15 13 29 29 H 1.09002 * 109.46826 * 63.36857 * 17 15 13 30 30 H 1.00903 * 111.00312 * 174.32783 * 18 17 15 31 31 H 1.00894 * 111.00670 * 298.28786 * 18 17 15 32 32 H 1.08999 * 109.47571 * 186.30520 * 19 15 13 33 33 H 1.09007 * 109.47022 * 306.30281 * 19 15 13 34 34 H 1.09004 * 115.54905 * 28.37142 * 20 19 15 35 35 H 1.09003 * 117.49486 * 359.97438 * 21 20 19 36 36 H 1.08990 * 117.50187 * 145.02118 * 21 20 19 37 37 H 1.08996 * 117.50126 * 214.97951 * 22 20 19 38 38 H 1.09003 * 117.49872 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6033 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1465 -0.1875 4.8165 11 1 1.1660 -1.5867 4.8161 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5874 16 1 3.6492 -1.1205 -3.3978 17 6 1.7063 -1.8829 -3.9315 18 7 2.2391 -2.6247 -5.0819 19 6 2.7007 0.2543 -4.7588 20 6 3.7595 1.3234 -4.4819 21 6 3.2851 2.7729 -4.3602 22 6 4.0630 2.3233 -5.5995 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 0.7087 1.1613 3.4844 27 1 2.2489 -1.6319 -1.1526 28 1 1.6230 -2.5517 -3.0747 29 1 0.7219 -1.4858 -4.1794 30 1 1.6840 -3.4457 -5.2714 31 1 2.2996 -2.0332 -5.8971 32 1 2.9563 -0.2823 -5.6726 33 1 1.7268 0.7294 -4.8769 34 1 4.5890 1.0104 -3.8477 35 1 2.2185 2.9648 -4.4779 36 1 3.8025 3.4136 -3.6463 37 1 5.0919 2.6684 -5.7004 38 1 3.5086 2.2192 -6.5322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404861541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:43 Heat of formation + Delta-G solvation = -29.784991 kcal Electronic energy + Delta-G solvation = -17727.393383 eV Core-core repulsion = 14990.880551 eV Total energy + Delta-G solvation = -2736.512832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39958 -37.07451 -35.34914 -34.66205 -32.28531 -30.87301 -28.81339 -25.93902 -25.21298 -22.52902 -22.03698 -20.76975 -20.18353 -19.06951 -17.33956 -16.06533 -15.86352 -15.36527 -15.02619 -14.61444 -14.08989 -13.79361 -13.57464 -13.41436 -12.83454 -12.36325 -12.20873 -11.73513 -11.55847 -11.23121 -11.05783 -11.02601 -10.95545 -10.83550 -10.65111 -10.28034 -10.22194 -9.85542 -9.62854 -9.00783 -8.82590 -8.76445 -8.52125 -7.81787 -6.10532 -4.19353 3.24569 3.32440 3.35358 3.47772 4.09696 4.16066 4.40022 4.62185 4.79490 4.98187 5.18511 5.21756 5.27944 5.37312 5.52305 5.65957 5.73835 5.80338 5.85482 6.02051 6.17632 6.26539 6.31299 6.43717 6.59061 6.84837 6.98786 7.00549 7.18583 7.31973 7.52299 7.61578 7.73199 7.95450 8.18147 8.74510 8.82973 9.22738 9.49011 10.95440 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.005992 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.258067 B = 4671.600336 C = 5179.136768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.711 5.711 13 C 0.504 3.496 14 O -0.543 6.543 15 C -0.106 4.106 16 H 0.098 0.902 17 C 0.070 3.930 18 N -0.849 5.849 19 C -0.065 4.065 20 C -0.137 4.137 21 C -0.150 4.150 22 C -0.197 4.197 23 H 0.024 0.976 24 H 0.013 0.987 25 H 0.089 0.911 26 H 0.263 0.737 27 H 0.387 0.613 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.341 0.659 31 H 0.339 0.661 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 -3.849 -14.027 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.359 5.359 13 C 0.287 3.713 14 O -0.421 6.421 15 C -0.128 4.128 16 H 0.116 0.884 17 C -0.061 4.061 18 N -0.379 5.379 19 C -0.103 4.103 20 C -0.155 4.155 21 C -0.187 4.187 22 C -0.234 4.234 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.219 0.781 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.910 -2.956 -13.434 14.060 hybrid contribution -0.499 -0.729 0.580 1.057 sum 2.410 -3.685 -12.854 13.587 Atomic orbital electron populations 1.22061 0.98652 0.98930 1.00763 1.18697 0.90859 0.93971 0.80199 0.93458 1.21282 1.32194 1.13120 0.90409 0.92096 1.24892 0.94850 0.94966 0.99060 1.69921 1.36039 1.22553 1.23685 0.86409 0.78596 0.79558 0.82636 1.19733 1.20900 1.20905 1.46549 1.65295 1.13425 1.10668 1.20308 0.78770 0.87580 0.84618 1.90649 1.50536 1.15802 1.85095 1.21440 1.01163 0.95570 0.94625 0.88378 1.21705 0.95174 0.94703 0.94493 1.58741 1.58972 1.11399 1.08814 1.20949 0.98571 0.94735 0.96059 1.22074 1.00572 0.91541 1.01328 1.22798 1.00201 0.97201 0.98491 1.23027 1.00932 1.05786 0.93618 0.95638 0.96765 0.89283 0.92698 0.78117 0.90307 0.94997 0.84683 0.84757 0.91654 0.91468 0.88554 0.88829 0.89512 0.89525 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.15 0.34 -3.29 16 2 C 0.26 6.76 2.56 -69.08 -0.18 6.58 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.12 11.32 55.43 0.63 -24.49 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.71 -14.78 4.94 -54.93 -0.27 -15.05 16 13 C 0.50 9.83 6.88 -10.99 -0.08 9.75 16 14 O -0.54 -12.41 13.75 5.56 0.08 -12.33 16 15 C -0.11 -1.54 2.36 -91.77 -0.22 -1.76 16 16 H 0.10 1.40 8.13 -51.93 -0.42 0.98 16 17 C 0.07 0.88 6.17 -3.83 -0.02 0.85 16 18 N -0.85 -8.51 9.55 -10.37 -0.10 -8.60 16 19 C -0.07 -0.88 4.48 -26.73 -0.12 -1.00 16 20 C -0.14 -1.97 4.77 -90.62 -0.43 -2.41 16 21 C -0.15 -2.26 9.04 -26.69 -0.24 -2.50 16 22 C -0.20 -2.42 10.25 -26.69 -0.27 -2.69 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.39 7.11 7.91 -40.82 -0.32 6.79 16 28 H 0.08 1.00 7.47 -51.92 -0.39 0.61 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.34 2.79 9.08 -39.29 -0.36 2.44 16 31 H 0.34 3.01 7.26 -39.30 -0.29 2.73 16 32 H 0.07 0.73 6.49 -51.93 -0.34 0.39 16 33 H 0.07 0.99 7.64 -51.93 -0.40 0.60 16 34 H 0.10 1.45 8.06 -51.93 -0.42 1.03 16 35 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 308.85 15.07 4.65 4.65 Total: -1.00 -29.85 308.85 -7.77 -37.63 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.13 Total: 11.71 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.26 Total: -48.15 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.85 -7.77 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404861541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.844 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds