Wall clock time and date at job start Mon Mar 30 2020 03:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47319 * 2 1 4 4 C 1.50708 * 109.47015 * 120.00292 * 2 1 3 5 5 H 1.07994 * 120.00293 * 119.99931 * 4 2 1 6 6 C 1.37877 * 119.99819 * 299.99603 * 4 2 1 7 7 N 1.31514 * 119.99614 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00152 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46771 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46861 * 119.99829 * 8 6 4 11 11 H 1.48490 * 109.47485 * 239.99984 * 8 6 4 12 12 N 1.46503 * 109.47127 * 239.99544 * 2 1 3 13 13 C 1.34776 * 119.99477 * 85.00260 * 12 2 1 14 14 O 1.21281 * 120.00458 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99831 * 179.97438 * 13 12 2 16 16 H 1.09001 * 109.47576 * 300.00436 * 15 13 12 17 17 C 1.53005 * 109.47254 * 60.00276 * 15 13 12 18 18 N 1.46893 * 109.47395 * 183.37096 * 17 15 13 19 19 C 1.53001 * 109.47323 * 179.97438 * 15 13 12 20 20 C 1.52999 * 109.46974 * 66.30190 * 19 15 13 21 21 C 1.53004 * 117.50035 * 242.70591 * 20 19 15 22 22 C 1.52999 * 117.49995 * 174.04530 * 20 19 15 23 23 H 1.08999 * 109.47319 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47503 * 60.00018 * 1 2 3 25 25 H 1.09002 * 109.47521 * 300.00106 * 1 2 3 26 26 H 0.97010 * 119.99545 * 180.02562 * 7 6 4 27 27 H 0.96998 * 120.00503 * 265.00510 * 12 2 1 28 28 H 1.09008 * 109.46691 * 303.37473 * 17 15 13 29 29 H 1.09002 * 109.46826 * 63.36857 * 17 15 13 30 30 H 1.00903 * 111.00312 * 174.32783 * 18 17 15 31 31 H 1.00894 * 111.00670 * 298.28786 * 18 17 15 32 32 H 1.08999 * 109.47571 * 186.30520 * 19 15 13 33 33 H 1.09007 * 109.47022 * 306.30281 * 19 15 13 34 34 H 1.09004 * 115.54905 * 28.37142 * 20 19 15 35 35 H 1.09003 * 117.49486 * 359.97438 * 21 20 19 36 36 H 1.08990 * 117.50187 * 145.02118 * 21 20 19 37 37 H 1.08996 * 117.50126 * 214.97951 * 22 20 19 38 38 H 1.09003 * 117.49872 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6033 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6038 10 1 3.1465 -0.1875 4.8165 11 1 1.1660 -1.5867 4.8161 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5874 16 1 3.6492 -1.1205 -3.3978 17 6 1.7063 -1.8829 -3.9315 18 7 2.2391 -2.6247 -5.0819 19 6 2.7007 0.2543 -4.7588 20 6 3.7595 1.3234 -4.4819 21 6 3.2851 2.7729 -4.3602 22 6 4.0630 2.3233 -5.5995 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 0.7087 1.1613 3.4844 27 1 2.2489 -1.6319 -1.1526 28 1 1.6230 -2.5517 -3.0747 29 1 0.7219 -1.4858 -4.1794 30 1 1.6840 -3.4457 -5.2714 31 1 2.2996 -2.0332 -5.8971 32 1 2.9563 -0.2823 -5.6726 33 1 1.7268 0.7294 -4.8769 34 1 4.5890 1.0104 -3.8477 35 1 2.2185 2.9648 -4.4779 36 1 3.8025 3.4136 -3.6463 37 1 5.0919 2.6684 -5.7004 38 1 3.5086 2.2192 -6.5322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404861541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:43 Heat of formation + Delta-G solvation = -50.901322 kcal Electronic energy + Delta-G solvation = -17728.309056 eV Core-core repulsion = 14990.880551 eV Total energy + Delta-G solvation = -2737.428505 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90732 -38.35682 -36.62812 -36.35357 -34.22204 -32.03384 -30.64476 -27.37879 -27.02828 -23.96731 -23.14727 -22.30686 -21.51298 -20.68178 -18.94019 -17.69626 -17.25415 -16.88683 -16.37280 -16.01570 -15.63549 -15.09469 -14.92380 -14.60114 -14.36942 -14.18134 -13.76099 -13.27363 -13.01675 -12.87741 -12.72481 -12.66517 -12.33469 -12.28086 -12.15740 -12.11609 -11.95443 -11.08932 -10.96650 -10.81880 -10.61256 -10.33941 -9.65597 -9.62035 -8.17731 -6.34957 1.43383 1.44484 1.56630 1.92508 2.36452 2.69775 3.01547 3.12671 3.62961 3.68411 3.90935 4.03350 4.16263 4.28240 4.30856 4.51459 4.62247 4.74687 4.76889 4.83661 4.92023 4.93239 5.06312 5.11037 5.15743 5.17879 5.32342 5.43888 5.46681 5.64444 5.72214 5.93938 6.12188 6.19836 6.64180 6.74329 7.05567 7.33623 7.65546 8.88661 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.005992 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.258067 B = 4671.600336 C = 5179.136768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.709 5.709 13 C 0.498 3.502 14 O -0.580 6.580 15 C -0.092 4.092 16 H 0.108 0.892 17 C 0.078 3.922 18 N -0.844 5.844 19 C -0.059 4.059 20 C -0.151 4.151 21 C -0.178 4.178 22 C -0.161 4.161 23 H 0.039 0.961 24 H 0.011 0.989 25 H 0.064 0.936 26 H 0.265 0.735 27 H 0.401 0.599 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.355 0.645 31 H 0.348 0.652 32 H 0.099 0.901 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -5.991 -15.321 16.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.184 1.184 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.460 6.460 15 C -0.114 4.114 16 H 0.126 0.874 17 C -0.053 4.053 18 N -0.377 5.377 19 C -0.097 4.097 20 C -0.169 4.169 21 C -0.216 4.216 22 C -0.198 4.198 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.235 0.765 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.920 -5.137 -14.767 16.119 hybrid contribution -0.809 -0.007 0.945 1.244 sum 3.112 -5.144 -13.822 15.073 Atomic orbital electron populations 1.21867 0.98446 0.99273 0.99375 1.18275 0.90961 0.91798 0.82151 0.98596 1.21596 1.32347 1.13419 0.90955 0.91074 1.25804 0.94903 0.95592 1.02346 1.70069 1.37141 1.24037 1.24473 0.85301 0.78104 0.78523 0.78430 1.18392 1.21014 1.20361 1.46323 1.65580 1.14005 1.09897 1.21235 0.77562 0.87281 0.85473 1.90642 1.51884 1.17730 1.85742 1.21369 1.01725 0.96124 0.92187 0.87386 1.21543 0.94259 0.93923 0.95623 1.58665 1.58911 1.11705 1.08400 1.20948 0.97555 0.94374 0.96804 1.22168 1.00625 0.91403 1.02695 1.22728 0.99654 0.98189 1.00993 1.23099 1.01371 1.02422 0.92924 0.94210 0.96986 0.91758 0.92615 0.76451 0.90381 0.95519 0.83118 0.83740 0.88266 0.92963 0.89440 0.90428 0.90978 0.87937 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.04 16 2 C 0.27 14.26 2.56 44.24 0.11 14.38 16 3 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 4 C -0.54 -29.22 8.73 25.60 0.22 -29.00 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 8 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.71 -29.58 4.94 -446.09 -2.20 -31.78 16 13 C 0.50 19.58 6.88 87.66 0.60 20.19 16 14 O -0.58 -27.49 13.75 -3.03 -0.04 -27.53 16 15 C -0.09 -2.55 2.36 -11.54 -0.03 -2.57 16 16 H 0.11 2.84 8.13 -2.39 -0.02 2.82 16 17 C 0.08 1.76 6.17 86.31 0.53 2.30 16 18 N -0.84 -14.05 9.55 -186.71 -1.78 -15.84 16 19 C -0.06 -1.49 4.48 30.59 0.14 -1.36 16 20 C -0.15 -4.20 4.77 -10.79 -0.05 -4.25 16 21 C -0.18 -5.50 9.04 30.62 0.28 -5.22 16 22 C -0.16 -3.63 10.25 30.62 0.31 -3.32 16 23 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 26 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 27 H 0.40 14.37 7.91 -92.71 -0.73 13.63 16 28 H 0.08 1.79 7.47 -2.38 -0.02 1.77 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.35 4.59 9.08 -89.69 -0.81 3.78 16 31 H 0.35 4.85 7.26 -89.70 -0.65 4.20 16 32 H 0.10 1.84 6.49 -2.39 -0.02 1.83 16 33 H 0.05 1.50 7.64 -2.38 -0.02 1.48 16 34 H 0.09 2.58 8.06 -2.38 -0.02 2.56 16 35 H 0.08 2.60 8.03 -2.39 -0.02 2.58 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -66.11 308.85 0.35 -65.76 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.13 Total: 31.76 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.24 Total: -13.72 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.75 Total: -100.73 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.04 Total: -27.53 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.11 0.35 -65.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404861541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.859 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds