Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 N 1.46494 * 109.47432 * 179.97438 * 14 13 12 16 16 C 1.45754 * 117.95151 * 269.74130 * 15 14 13 17 17 C 1.53100 * 110.38901 * 160.74219 * 16 15 14 18 18 C 1.53345 * 108.52796 * 51.11392 * 17 16 15 19 19 C 1.53072 * 108.42724 * 292.31027 * 18 17 16 20 20 C 1.33350 * 117.94447 * 89.99909 * 15 14 13 21 21 O 1.21287 * 118.24823 * 2.24949 * 20 15 14 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 1.08999 * 109.29957 * 281.23555 * 16 15 14 32 32 H 1.09001 * 109.29689 * 40.61231 * 16 15 14 33 33 H 1.09001 * 109.80669 * 291.32608 * 17 16 15 34 34 H 1.08998 * 109.68090 * 170.83039 * 17 16 15 35 35 H 1.08995 * 109.67458 * 172.57513 * 18 17 16 36 36 H 1.08999 * 109.70145 * 52.06185 * 18 17 16 37 37 H 1.08998 * 109.39696 * 288.77135 * 19 18 17 38 38 H 1.08997 * 109.33214 * 168.98161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 7 2.6581 0.3798 4.7187 16 6 3.8990 1.1112 4.9415 17 6 3.6482 2.3264 5.8383 18 6 2.8922 1.8615 7.0888 19 6 1.4890 1.4172 6.6686 20 6 1.5784 0.4855 5.4941 21 8 0.6172 -0.2084 5.2375 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 1.4496 -1.4978 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 4.6254 0.4520 5.4168 32 1 4.2955 1.4481 3.9837 33 1 3.0504 3.0637 5.3025 34 1 4.6002 2.7699 6.1302 35 1 2.8190 2.6839 7.8003 36 1 3.4199 1.0253 7.5475 37 1 0.8997 2.2917 6.3929 38 1 1.0082 0.9045 7.5017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405293767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = -45.452593 kcal Electronic energy + Delta-G solvation = -17487.632821 eV Core-core repulsion = 14750.440591 eV Total energy + Delta-G solvation = -2737.192230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43468 -36.53164 -36.18836 -34.24686 -32.33730 -29.88924 -29.35174 -26.46614 -25.08460 -24.48749 -22.80307 -21.35420 -20.17150 -18.60903 -16.63808 -16.44874 -16.26488 -15.54738 -14.72406 -14.66766 -14.38740 -14.03121 -13.69955 -13.40931 -13.25770 -12.89956 -12.14438 -11.97666 -11.68335 -11.54329 -11.41696 -11.25232 -11.13801 -10.92750 -10.84622 -10.66733 -10.31893 -10.07798 -9.90444 -9.56512 -9.01545 -8.56568 -8.32239 -7.21115 -5.94529 -3.97985 2.71944 3.05511 3.37111 3.40661 3.44215 4.44814 4.47396 4.52331 4.54923 4.62867 5.13485 5.19349 5.33218 5.36681 5.38982 5.48632 5.54561 5.59765 5.64214 5.71994 5.77392 5.95400 5.96696 6.35246 6.37382 6.64428 6.77038 6.92591 7.16329 7.41345 7.55413 7.79106 7.91836 8.25278 8.31454 8.56973 8.65618 9.08801 9.67025 11.12552 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.004564 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.979683 B = 6133.798671 C = 6314.975616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.213 3.787 3 H 0.031 0.969 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.289 1.289 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.051 3.949 14 C 0.108 3.892 15 N -0.600 5.600 16 C 0.112 3.888 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.134 4.134 20 C 0.511 3.489 21 O -0.554 6.554 22 H 0.005 0.995 23 H 0.088 0.912 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.326 0.674 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 3.479 18.172 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.215 1.215 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.312 5.312 13 C -0.080 4.080 14 C -0.015 4.015 15 N -0.333 5.333 16 C -0.011 4.011 17 C -0.175 4.175 18 C -0.161 4.161 19 C -0.174 4.174 20 C 0.300 3.700 21 O -0.432 6.432 22 H 0.024 0.976 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.847 3.339 17.741 18.975 hybrid contribution -0.650 -0.159 -0.708 0.974 sum 5.196 3.180 17.033 18.090 Atomic orbital electron populations 1.22417 1.00652 0.99276 1.00436 1.19154 0.89673 0.94284 0.86364 0.95068 1.21127 1.30230 1.12426 0.89599 0.91962 1.24963 0.95352 0.95228 0.99042 1.69886 1.37284 1.23250 1.23392 0.86551 0.79118 0.79621 0.82010 1.21489 1.20308 1.20360 1.60793 1.58071 1.09107 1.03255 1.22122 0.98816 0.96270 0.90830 1.21579 1.02736 0.92642 0.84496 1.47325 1.13538 1.44069 1.28342 1.21453 0.85838 0.93165 1.00671 1.21926 1.01814 0.97495 0.96276 1.21657 0.94921 1.01690 0.97788 1.21657 0.99006 0.99880 0.96867 1.20136 0.82346 0.83616 0.83951 1.90733 1.35587 1.44700 1.72200 0.97628 0.89309 0.95293 0.93050 0.85728 0.92009 0.96033 0.89896 0.89941 0.91673 0.90181 0.90782 0.89810 0.90703 0.91182 0.88423 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 8.94 37.16 0.33 -3.98 16 2 C 0.21 5.57 2.57 -68.87 -0.18 5.39 16 3 H 0.03 0.89 7.80 -51.92 -0.40 0.49 16 4 C -0.49 -14.01 8.84 -34.44 -0.30 -14.32 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -26.25 11.32 55.43 0.63 -25.62 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.68 -15.11 6.23 -107.95 -0.67 -15.78 16 13 C 0.05 0.97 5.80 -3.82 -0.02 0.95 16 14 C 0.11 1.70 5.48 -4.04 -0.02 1.68 16 15 N -0.60 -8.05 2.81 -174.85 -0.49 -8.54 16 16 C 0.11 1.07 6.32 -4.39 -0.03 1.05 16 17 C -0.14 -1.02 6.03 -26.50 -0.16 -1.18 16 18 C -0.12 -0.87 6.03 -26.52 -0.16 -1.03 16 19 C -0.13 -1.32 6.03 -28.10 -0.17 -1.49 16 20 C 0.51 7.43 7.46 -11.87 -0.09 7.34 16 21 O -0.55 -10.57 16.18 5.55 0.09 -10.48 16 22 H 0.00 0.11 7.45 -51.93 -0.39 -0.27 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.03 0.71 8.13 -51.93 -0.42 0.28 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.33 7.03 8.47 -39.30 -0.33 6.69 16 27 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 28 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 29 H 0.08 1.43 7.13 -51.93 -0.37 1.06 16 30 H 0.08 1.18 8.01 -51.92 -0.42 0.77 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.79 8.10 -51.93 -0.42 0.36 16 33 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -32.19 305.95 -8.13 -40.32 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.38 Total: 2.86 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.89 Total: -4.14 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.54 Total: -49.95 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.19 -8.13 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405293767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.137 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds