Wall clock time and date at job start Mon Mar 30 2020 03:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 N 1.46494 * 109.47432 * 179.97438 * 14 13 12 16 16 C 1.45754 * 117.95151 * 269.74130 * 15 14 13 17 17 C 1.53100 * 110.38901 * 160.74219 * 16 15 14 18 18 C 1.53345 * 108.52796 * 51.11392 * 17 16 15 19 19 C 1.53072 * 108.42724 * 292.31027 * 18 17 16 20 20 C 1.33350 * 117.94447 * 89.99909 * 15 14 13 21 21 O 1.21287 * 118.24823 * 2.24949 * 20 15 14 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 1.08999 * 109.29957 * 281.23555 * 16 15 14 32 32 H 1.09001 * 109.29689 * 40.61231 * 16 15 14 33 33 H 1.09001 * 109.80669 * 291.32608 * 17 16 15 34 34 H 1.08998 * 109.68090 * 170.83039 * 17 16 15 35 35 H 1.08995 * 109.67458 * 172.57513 * 18 17 16 36 36 H 1.08999 * 109.70145 * 52.06185 * 18 17 16 37 37 H 1.08998 * 109.39696 * 288.77135 * 19 18 17 38 38 H 1.08997 * 109.33214 * 168.98161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 7 2.6581 0.3798 4.7187 16 6 3.8990 1.1112 4.9415 17 6 3.6482 2.3264 5.8383 18 6 2.8922 1.8615 7.0888 19 6 1.4890 1.4172 6.6686 20 6 1.5784 0.4855 5.4941 21 8 0.6172 -0.2084 5.2375 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 1.4496 -1.4978 1.4101 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 4.6254 0.4520 5.4168 32 1 4.2955 1.4481 3.9837 33 1 3.0504 3.0637 5.3025 34 1 4.6002 2.7699 6.1302 35 1 2.8190 2.6839 7.8003 36 1 3.4199 1.0253 7.5475 37 1 0.8997 2.2917 6.3929 38 1 1.0082 0.9045 7.5017 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405293767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:08 Heat of formation + Delta-G solvation = -67.578218 kcal Electronic energy + Delta-G solvation = -17488.592260 eV Core-core repulsion = 14750.440591 eV Total energy + Delta-G solvation = -2738.151670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50882 -38.11052 -37.44468 -35.54892 -34.17427 -31.31635 -30.52570 -28.04463 -27.25459 -25.37585 -23.98751 -22.51052 -22.21372 -19.52457 -18.42795 -17.67143 -17.51620 -16.82353 -16.55876 -16.16494 -15.33599 -15.23361 -15.03729 -14.84638 -14.29284 -14.19257 -13.96764 -13.56704 -13.27300 -12.90350 -12.80697 -12.73037 -12.50019 -12.23341 -12.20311 -12.04417 -11.93352 -11.78105 -11.73065 -11.12214 -10.67794 -10.50224 -9.74381 -9.09799 -8.10846 -6.23034 1.44118 1.46581 1.54266 1.59987 2.00770 2.44577 3.17394 3.56212 3.69527 3.87728 3.91824 3.96072 4.05503 4.23403 4.47704 4.52603 4.56945 4.64569 4.67094 4.77760 4.84411 4.86762 4.91736 5.00583 5.05330 5.08256 5.15280 5.29891 5.37444 5.47448 5.63658 5.76050 6.21158 6.50000 6.56028 6.71227 6.89800 7.15264 7.46809 8.95187 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045445 B = 0.004564 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.979683 B = 6133.798671 C = 6314.975616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.966 3.034 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.061 3.939 14 C 0.119 3.881 15 N -0.598 5.598 16 C 0.102 3.898 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.129 4.129 20 C 0.500 3.500 21 O -0.610 6.610 22 H 0.013 0.987 23 H 0.065 0.935 24 H 0.031 0.969 25 H 0.262 0.738 26 H 0.331 0.669 27 H 0.061 0.939 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 3.640 19.232 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.792 3.208 9 H -0.210 1.210 10 H -0.195 1.195 11 H -0.197 1.197 12 N -0.309 5.309 13 C -0.070 4.070 14 C -0.004 4.004 15 N -0.329 5.329 16 C -0.019 4.019 17 C -0.171 4.171 18 C -0.152 4.152 19 C -0.169 4.169 20 C 0.290 3.710 21 O -0.493 6.493 22 H 0.032 0.968 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.147 0.853 27 H 0.079 0.921 28 H 0.015 0.985 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.533 3.518 18.831 20.585 hybrid contribution -1.156 -0.174 -1.010 1.545 sum 6.377 3.344 17.821 19.221 Atomic orbital electron populations 1.22244 1.00455 0.99153 0.99631 1.18943 0.89725 0.92798 0.87693 0.98068 1.21401 1.30706 1.12649 0.90774 0.92277 1.25790 0.95342 0.95860 1.02101 1.70018 1.37953 1.24377 1.24161 0.85484 0.78762 0.78542 0.78041 1.20990 1.19532 1.19661 1.60684 1.57552 1.09396 1.03244 1.22081 0.97593 0.96108 0.91214 1.21299 1.02970 0.92209 0.83966 1.47473 1.14781 1.43650 1.27027 1.21795 0.84339 0.94315 1.01493 1.21956 1.03260 0.96116 0.95763 1.21666 0.92688 1.02843 0.98027 1.21707 1.01433 0.98872 0.94880 1.21098 0.81533 0.83479 0.84861 1.90702 1.37591 1.47112 1.73869 0.96793 0.91614 0.94944 0.92930 0.85273 0.92096 0.98474 0.91578 0.88052 0.89497 0.90485 0.91700 0.86863 0.88048 0.90418 0.87772 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.13 8.94 71.98 0.64 -7.49 16 2 C 0.22 11.60 2.57 44.17 0.11 11.72 16 3 H 0.00 0.08 7.80 -2.38 -0.02 0.06 16 4 C -0.52 -29.48 8.84 25.60 0.23 -29.25 16 5 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.01 0.40 5.30 84.66 0.45 0.85 16 7 N -0.93 -54.61 11.32 21.45 0.24 -54.37 16 8 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 N -0.68 -30.49 6.23 -495.44 -3.09 -33.58 16 13 C 0.06 2.37 5.80 86.30 0.50 2.87 16 14 C 0.12 3.74 5.48 86.38 0.47 4.21 16 15 N -0.60 -15.58 2.81 -826.29 -2.32 -17.90 16 16 C 0.10 1.73 6.32 86.55 0.55 2.28 16 17 C -0.13 -1.56 6.03 30.74 0.19 -1.37 16 18 C -0.11 -1.23 6.03 30.73 0.19 -1.05 16 19 C -0.13 -2.32 6.03 29.71 0.18 -2.15 16 20 C 0.50 14.40 7.46 87.72 0.65 15.05 16 21 O -0.61 -23.96 16.18 -3.05 -0.05 -24.01 16 22 H 0.01 0.65 7.45 -2.39 -0.02 0.64 16 23 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 24 H 0.03 1.61 8.13 -2.39 -0.02 1.59 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.90 16 26 H 0.33 14.42 8.47 -89.70 -0.76 13.66 16 27 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 28 H 0.00 -0.13 7.44 -2.39 -0.02 -0.15 16 29 H 0.07 2.32 7.13 -2.39 -0.02 2.30 16 30 H 0.10 2.79 8.01 -2.38 -0.02 2.77 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 33 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.76 8.12 -2.39 -0.02 0.74 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -70.75 305.95 1.24 -69.51 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.27 Total: 18.15 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 4.16 Total: -4.31 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -5.17 Total: -105.86 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.75 1.24 -69.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405293767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.935 kcal (2) G-P(sol) polarization free energy of solvation -70.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds