Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46592 * 111.00411 * 176.04380 * 12 2 1 14 14 C 1.53697 * 111.03968 * 179.87583 * 13 12 2 15 15 N 1.45639 * 107.51372 * 303.77930 * 14 13 12 16 16 C 1.46947 * 117.16572 * 180.53644 * 15 14 13 17 17 C 1.55271 * 103.40256 * 197.49427 * 16 15 14 18 18 H 1.09000 * 110.35042 * 265.21949 * 17 16 15 19 19 O 1.42894 * 110.35515 * 142.93589 * 17 16 15 20 20 C 1.55072 * 104.91269 * 24.07316 * 17 16 15 21 21 C 1.48864 * 108.88218 * 63.51978 * 15 14 13 22 22 H 1.08997 * 110.30662 * 52.31551 * 21 15 14 23 23 C 1.47590 * 111.00039 * 302.20475 * 12 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.16594 * 300.27920 * 13 12 2 29 29 H 1.08999 * 109.16366 * 59.52843 * 13 12 2 30 30 H 1.08996 * 109.84934 * 63.28220 * 14 13 12 31 31 H 1.09002 * 109.85125 * 184.20870 * 14 13 12 32 32 H 1.09001 * 110.63522 * 315.97282 * 16 15 14 33 33 H 1.08993 * 110.63396 * 79.00975 * 16 15 14 34 34 H 0.96701 * 114.00148 * 64.50927 * 19 17 16 35 35 H 1.09000 * 110.50925 * 244.15157 * 20 17 16 36 36 H 1.08993 * 110.50393 * 121.44940 * 20 17 16 37 37 H 1.09003 * 109.86377 * 296.86802 * 23 12 2 38 38 H 1.08992 * 109.87420 * 57.91539 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4820 -0.7943 1.1869 14 6 3.9956 -1.5161 2.4430 15 7 3.4911 -0.7920 3.6016 16 6 3.8696 -1.3003 4.9274 17 6 2.8416 -0.6282 5.8774 18 1 3.2571 0.2872 6.2989 19 8 2.4645 -1.5300 6.9197 20 6 1.6210 -0.3022 4.9783 21 6 2.0045 -0.8704 3.6088 22 1 1.6800 -1.9077 3.5264 23 6 1.5037 -0.0546 2.4262 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 3.7946 -1.3493 0.3024 29 1 3.9102 0.2074 1.1506 30 1 3.6262 -2.5414 2.4577 31 1 5.0856 -1.5154 2.4507 32 1 3.7744 -2.3855 4.9643 33 1 4.8844 -0.9939 5.1808 34 1 3.1889 -1.7694 7.5139 35 1 1.4696 0.7754 4.9158 36 1 0.7251 -0.7933 5.3581 37 1 1.8762 0.9674 2.4970 38 1 0.4139 -0.0525 2.4125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405315061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -28.390999 kcal Electronic energy + Delta-G solvation = -18198.689424 eV Core-core repulsion = 15462.237040 eV Total energy + Delta-G solvation = -2736.452384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.86088 -37.17042 -35.37125 -32.77574 -32.06168 -29.82323 -28.23225 -27.02361 -25.21970 -23.32950 -21.91917 -20.89039 -19.74362 -19.22018 -17.53139 -16.30071 -15.82371 -15.21306 -14.64754 -14.37643 -14.17269 -13.94214 -13.41234 -13.21540 -12.96660 -12.66937 -12.20760 -11.72033 -11.58721 -11.41422 -10.98672 -10.88407 -10.73507 -10.64415 -10.51030 -10.30768 -10.13960 -10.01380 -9.87706 -9.62191 -8.83650 -8.39738 -8.23257 -7.08331 -5.99040 -4.03820 3.33073 3.37492 3.40176 3.90731 4.38029 4.43315 4.60853 4.76929 4.95935 5.04709 5.32202 5.40161 5.53505 5.55249 5.65108 5.74228 5.88561 5.95126 5.97165 6.05324 6.17765 6.20697 6.51879 6.66091 6.74636 6.88682 7.02871 7.08309 7.17990 7.38730 7.52748 7.56739 7.77698 7.84700 8.25622 8.35517 8.63521 9.02334 9.61175 11.07641 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.005796 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.379073 B = 4829.657634 C = 5229.883392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.216 3.784 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.544 5.544 13 C 0.076 3.924 14 C 0.057 3.943 15 N -0.526 5.526 16 C 0.012 3.988 17 C 0.100 3.900 18 H 0.067 0.933 19 O -0.566 6.566 20 C -0.108 4.108 21 C 0.067 3.933 22 H 0.059 0.941 23 C 0.070 3.930 24 H 0.009 0.991 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.261 0.739 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.375 0.625 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -2.552 14.447 15.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.110 3.890 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.269 5.269 13 C -0.053 4.053 14 C -0.072 4.072 15 N -0.252 5.252 16 C -0.117 4.117 17 C 0.041 3.959 18 H 0.085 0.915 19 O -0.371 6.371 20 C -0.147 4.147 21 C -0.042 4.042 22 H 0.077 0.923 23 C -0.058 4.058 24 H 0.028 0.972 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.051 0.949 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.796 -2.340 13.902 14.600 hybrid contribution 1.038 -0.527 -0.559 1.291 sum 4.835 -2.867 13.343 14.479 Atomic orbital electron populations 1.21847 0.97727 0.99587 0.99929 1.19185 0.92239 0.91923 0.85604 0.98425 1.21117 1.31108 1.12234 0.89835 0.92031 1.24924 0.95206 0.95064 0.98974 1.69880 1.36881 1.22983 1.23485 0.86593 0.79057 0.79753 0.82174 1.20264 1.21369 1.20368 1.61736 1.08381 1.54360 1.02453 1.21911 0.88921 0.98776 0.95704 1.22218 0.98922 0.95754 0.90289 1.63947 1.07404 1.52931 1.00911 1.23520 0.99319 0.98023 0.90867 1.22879 0.94808 0.91188 0.87019 0.91534 1.86558 1.39964 1.67019 1.43514 1.22156 0.97268 1.01864 0.93395 1.22487 0.87910 0.99445 0.94310 0.92330 1.21943 0.99641 0.95117 0.89106 0.97242 0.94746 0.89679 0.92947 0.89461 0.95489 0.94441 0.91121 0.93526 0.90454 0.77807 0.90012 0.90110 0.94907 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.68 37.16 0.32 -2.95 16 2 C 0.22 5.53 2.10 -68.87 -0.14 5.38 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.50 -13.82 7.92 -34.44 -0.27 -14.09 16 5 H 0.06 1.67 6.38 -52.49 -0.34 1.34 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.54 -11.95 4.50 -227.80 -1.02 -12.98 16 13 C 0.08 1.53 5.29 -3.63 -0.02 1.51 16 14 C 0.06 0.94 6.04 -4.14 -0.03 0.91 16 15 N -0.53 -8.26 4.85 -224.56 -1.09 -9.35 16 16 C 0.01 0.14 6.47 -2.59 -0.02 0.13 16 17 C 0.10 1.18 4.46 -24.43 -0.11 1.07 16 18 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 19 O -0.57 -6.28 13.30 -35.23 -0.47 -6.75 16 20 C -0.11 -1.46 6.46 -25.56 -0.17 -1.63 16 21 C 0.07 1.08 2.61 -66.98 -0.17 0.91 16 22 H 0.06 1.03 8.01 -51.93 -0.42 0.61 16 23 C 0.07 1.34 4.84 -3.88 -0.02 1.32 16 24 H 0.01 0.19 6.32 -51.93 -0.33 -0.13 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.09 1.86 6.19 -51.93 -0.32 1.54 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.38 2.40 9.12 45.56 0.42 2.82 16 35 H 0.08 1.05 8.02 -51.93 -0.42 0.63 16 36 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.45 6.19 -51.93 -0.32 1.13 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -29.80 290.75 -8.70 -38.50 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.39 Total: 0.68 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.72 Total: -5.89 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -1.49 Total: -47.23 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.47 Total: -6.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.80 -8.70 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405315061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.111 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds