Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46592 * 111.00411 * 176.04380 * 12 2 1 14 14 C 1.53697 * 111.03968 * 179.87583 * 13 12 2 15 15 N 1.45639 * 107.51372 * 303.77930 * 14 13 12 16 16 C 1.46947 * 117.16572 * 180.53644 * 15 14 13 17 17 C 1.55271 * 103.40256 * 197.49427 * 16 15 14 18 18 H 1.09000 * 110.35042 * 265.21949 * 17 16 15 19 19 O 1.42894 * 110.35515 * 142.93589 * 17 16 15 20 20 C 1.55072 * 104.91269 * 24.07316 * 17 16 15 21 21 C 1.48864 * 108.88218 * 63.51978 * 15 14 13 22 22 H 1.08997 * 110.30662 * 52.31551 * 21 15 14 23 23 C 1.47590 * 111.00039 * 302.20475 * 12 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.16594 * 300.27920 * 13 12 2 29 29 H 1.08999 * 109.16366 * 59.52843 * 13 12 2 30 30 H 1.08996 * 109.84934 * 63.28220 * 14 13 12 31 31 H 1.09002 * 109.85125 * 184.20870 * 14 13 12 32 32 H 1.09001 * 110.63522 * 315.97282 * 16 15 14 33 33 H 1.08993 * 110.63396 * 79.00975 * 16 15 14 34 34 H 0.96701 * 114.00148 * 64.50927 * 19 17 16 35 35 H 1.09000 * 110.50925 * 244.15157 * 20 17 16 36 36 H 1.08993 * 110.50393 * 121.44940 * 20 17 16 37 37 H 1.09003 * 109.86377 * 296.86802 * 23 12 2 38 38 H 1.08992 * 109.87420 * 57.91539 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 7 2.0197 -0.6925 1.1993 13 6 3.4820 -0.7943 1.1869 14 6 3.9956 -1.5161 2.4430 15 7 3.4911 -0.7920 3.6016 16 6 3.8696 -1.3003 4.9274 17 6 2.8416 -0.6282 5.8774 18 1 3.2571 0.2872 6.2989 19 8 2.4645 -1.5300 6.9197 20 6 1.6210 -0.3022 4.9783 21 6 2.0045 -0.8704 3.6088 22 1 1.6800 -1.9077 3.5264 23 6 1.5037 -0.0546 2.4262 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7093 1.1619 -3.4844 28 1 3.7946 -1.3493 0.3024 29 1 3.9102 0.2074 1.1506 30 1 3.6262 -2.5414 2.4577 31 1 5.0856 -1.5154 2.4507 32 1 3.7744 -2.3855 4.9643 33 1 4.8844 -0.9939 5.1808 34 1 3.1889 -1.7694 7.5139 35 1 1.4696 0.7754 4.9158 36 1 0.7251 -0.7933 5.3581 37 1 1.8762 0.9674 2.4970 38 1 0.4139 -0.0525 2.4125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405315061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = -52.330148 kcal Electronic energy + Delta-G solvation = -18199.727504 eV Core-core repulsion = 15462.237040 eV Total energy + Delta-G solvation = -2737.490464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12671 -38.50879 -36.71558 -34.63783 -33.44036 -31.51870 -29.61233 -28.48672 -27.19352 -24.86085 -23.32678 -22.10453 -21.35228 -20.74193 -18.42917 -18.36229 -17.32253 -16.61035 -16.26051 -15.80576 -15.47720 -15.39453 -15.02083 -14.70508 -14.30715 -14.09073 -13.55709 -13.43373 -13.05288 -12.89102 -12.84055 -12.57973 -12.29360 -12.17399 -12.01084 -11.99186 -11.92862 -11.63711 -11.24247 -10.89513 -10.83876 -10.50239 -9.47742 -8.91193 -8.10866 -6.23286 1.42663 1.44580 1.52121 2.42230 2.85624 3.13867 3.22082 3.48146 3.62927 3.73870 3.96356 4.21527 4.27142 4.36150 4.39378 4.45973 4.60779 4.68815 4.72400 4.79867 4.88758 4.93353 4.99497 5.02927 5.07686 5.12210 5.19023 5.21844 5.49973 5.71128 5.75646 5.84336 6.17256 6.25984 6.41060 6.73936 6.90900 6.92040 7.45943 8.95043 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048822 B = 0.005796 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.379073 B = 4829.657634 C = 5229.883392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.220 3.780 3 H -0.041 1.041 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.550 5.550 13 C 0.077 3.923 14 C 0.069 3.931 15 N -0.536 5.536 16 C 0.015 3.985 17 C 0.110 3.890 18 H 0.086 0.914 19 O -0.578 6.578 20 C -0.108 4.108 21 C 0.072 3.928 22 H 0.045 0.955 23 C 0.072 3.928 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.397 0.603 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.023 0.977 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 -3.425 15.979 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.114 3.886 3 H -0.024 1.024 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.275 5.275 13 C -0.052 4.052 14 C -0.060 4.060 15 N -0.262 5.262 16 C -0.113 4.113 17 C 0.050 3.950 18 H 0.104 0.896 19 O -0.386 6.386 20 C -0.146 4.146 21 C -0.036 4.036 22 H 0.063 0.937 23 C -0.056 4.056 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.247 0.753 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.804 -3.227 15.475 16.521 hybrid contribution 0.735 -0.239 -0.976 1.245 sum 5.539 -3.466 14.499 15.904 Atomic orbital electron populations 1.21658 0.97186 0.99209 0.99809 1.18989 0.92661 0.89929 0.87060 1.02399 1.21385 1.31294 1.12302 0.90933 0.92302 1.25724 0.95320 0.95739 1.01926 1.70014 1.37711 1.24165 1.24136 0.85565 0.78727 0.78640 0.78405 1.19704 1.20932 1.19620 1.61692 1.09571 1.53911 1.02344 1.21886 0.87826 0.98019 0.97433 1.22047 1.00142 0.94849 0.88941 1.63911 1.06818 1.53357 1.02151 1.23628 1.00798 0.98101 0.88811 1.22755 0.93283 0.92010 0.86910 0.89578 1.86513 1.41499 1.66898 1.43675 1.22144 0.98392 1.02080 0.92003 1.22343 0.88566 0.98152 0.94553 0.93662 1.21971 0.99544 0.94994 0.89095 0.95039 0.95027 0.92084 0.92910 0.91170 0.97260 0.94644 0.88676 0.93524 0.88167 0.75286 0.89460 0.89935 0.95908 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.68 71.98 0.62 -5.45 16 2 C 0.22 11.64 2.10 44.17 0.09 11.74 16 3 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 4 C -0.52 -29.19 7.92 25.60 0.20 -28.99 16 5 H 0.06 3.26 6.38 -2.91 -0.02 3.24 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.55 -24.64 4.50 -874.62 -3.93 -28.57 16 13 C 0.08 3.15 5.29 86.60 0.46 3.61 16 14 C 0.07 2.18 6.04 86.78 0.52 2.70 16 15 N -0.54 -15.79 4.85 -864.36 -4.20 -19.99 16 16 C 0.01 0.32 6.47 87.07 0.56 0.88 16 17 C 0.11 2.21 4.46 32.08 0.14 2.35 16 18 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 19 O -0.58 -10.80 13.30 -148.98 -1.98 -12.78 16 20 C -0.11 -2.67 6.46 31.35 0.20 -2.47 16 21 C 0.07 2.26 2.61 44.30 0.12 2.38 16 22 H 0.05 1.55 8.01 -2.39 -0.02 1.53 16 23 C 0.07 2.75 4.84 85.89 0.42 3.16 16 24 H 0.03 1.39 6.32 -2.39 -0.02 1.38 16 25 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 3.37 6.07 -2.38 -0.01 3.36 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.07 3.07 6.19 -2.39 -0.01 3.05 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.40 3.55 9.12 -74.06 -0.68 2.87 16 35 H 0.09 2.06 8.02 -2.39 -0.02 2.04 16 36 H 0.08 2.02 8.00 -2.39 -0.02 2.00 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 2.85 6.19 -2.39 -0.01 2.84 16 Total: -1.00 -64.66 290.75 -3.68 -68.34 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.37 Total: 9.45 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 3.79 Total: -8.99 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -7.89 Total: -102.08 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.98 Total: -12.78 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.66 -3.68 -68.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405315061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.014 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds