Wall clock time and date at job start Mon Mar 30 2020 03:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.34780 * 120.00034 * 275.00683 * 12 2 1 14 14 O 1.21278 * 119.99851 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00157 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47250 * 179.97438 * 15 13 12 17 17 H 1.08991 * 110.43343 * 307.53665 * 16 15 13 18 18 C 1.54891 * 110.48491 * 70.22414 * 16 15 13 19 19 C 1.54888 * 102.74704 * 156.61871 * 18 16 15 20 20 C 1.54268 * 104.20014 * 322.05861 * 19 18 16 21 21 C 1.53881 * 106.59565 * 23.60502 * 20 19 18 22 22 H 1.09003 * 110.02774 * 119.28455 * 21 20 19 23 23 N 1.46892 * 110.07294 * 240.69509 * 21 20 19 24 24 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 25 25 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 26 26 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 29 29 H 1.09007 * 109.46733 * 299.99799 * 15 13 12 30 30 H 1.08998 * 109.46850 * 59.99433 * 15 13 12 31 31 H 1.08995 * 110.75353 * 274.93095 * 18 16 15 32 32 H 1.08996 * 110.75364 * 38.30851 * 18 16 15 33 33 H 1.08992 * 110.48716 * 203.37584 * 19 18 16 34 34 H 1.09005 * 110.48373 * 80.73545 * 19 18 16 35 35 H 1.08997 * 110.03064 * 264.32775 * 20 19 18 36 36 H 1.08994 * 110.07803 * 142.91288 * 20 19 18 37 37 H 1.00902 * 111.00366 * 297.19107 * 23 21 20 38 38 H 1.00901 * 111.00143 * 61.14799 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6295 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6489 -0.7288 3.5877 16 6 2.7010 0.2544 4.7588 17 1 3.2624 1.1466 4.4818 18 6 1.2693 0.6309 5.2145 19 6 1.4846 1.0802 6.6811 20 6 2.5554 0.1097 7.2208 21 6 3.3288 -0.4154 5.9985 22 1 4.3813 -0.1428 6.0774 23 7 3.1930 -1.8750 5.9050 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7046 1.1585 -3.4844 28 1 2.2492 -1.6317 1.1525 29 1 1.9760 -1.5507 3.8325 30 1 3.6480 -1.1213 3.3985 31 1 0.8756 1.4504 4.6133 32 1 0.6092 -0.2352 5.1688 33 1 0.5599 0.9824 7.2496 34 1 1.8482 2.1072 6.7160 35 1 2.0786 -0.7185 7.7449 36 1 3.2327 0.6362 7.8932 37 1 3.5994 -2.3284 6.7096 38 1 2.2267 -2.1416 5.7894 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405864213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:12 Heat of formation + Delta-G solvation = -83.697377 kcal Electronic energy + Delta-G solvation = -17606.344024 eV Core-core repulsion = 14867.493376 eV Total energy + Delta-G solvation = -2738.850649 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85431 -39.27324 -36.63831 -34.27790 -33.19316 -32.60372 -30.63224 -27.63873 -27.34201 -26.41383 -23.01193 -21.56497 -21.06635 -20.04171 -18.93944 -17.89172 -17.15425 -16.87761 -16.15042 -16.03477 -15.52382 -15.21074 -14.76610 -14.55947 -14.42060 -13.93262 -13.74409 -13.27588 -13.05997 -12.85665 -12.71177 -12.66372 -12.27392 -12.13720 -11.94122 -11.86072 -11.70078 -11.49973 -11.36582 -11.08688 -10.64418 -10.45299 -9.66382 -9.46303 -8.16727 -6.34432 1.45014 1.45994 1.56802 1.95934 2.37986 2.74655 3.13327 3.62312 3.66880 3.80933 4.05396 4.20353 4.36857 4.52423 4.59461 4.62067 4.72864 4.76034 4.86004 4.91189 4.93479 5.02673 5.10986 5.12056 5.21427 5.30272 5.44661 5.48032 5.51860 5.64946 5.72824 5.94829 6.12496 6.35936 6.73900 6.74606 7.06870 7.34175 7.67275 8.89561 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049614 B = 0.004828 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.223418 B = 5797.817686 C = 6139.163633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.710 5.710 13 C 0.489 3.511 14 O -0.601 6.601 15 C -0.099 4.099 16 C -0.071 4.071 17 H 0.058 0.942 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.148 4.148 21 C 0.098 3.902 22 H 0.083 0.917 23 N -0.842 5.842 24 H 0.010 0.990 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.350 0.650 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 -6.902 17.948 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.359 5.359 13 C 0.277 3.723 14 O -0.483 6.483 15 C -0.139 4.139 16 C -0.090 4.090 17 H 0.077 0.923 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.188 4.188 21 C -0.014 4.014 22 H 0.101 0.899 23 N -0.372 5.372 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.164 0.836 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.508 -5.918 17.182 18.508 hybrid contribution -0.484 -0.047 -0.348 0.597 sum 3.025 -5.965 16.834 18.114 Atomic orbital electron populations 1.21875 0.98440 0.99315 0.99377 1.18296 0.91042 0.91779 0.82356 0.98818 1.21573 1.32501 1.13498 0.90911 0.90943 1.25835 0.94884 0.95585 1.02411 1.70065 1.36934 1.24200 1.24554 0.85316 0.78987 0.78019 0.77837 1.19565 1.21211 1.18806 1.46333 1.65494 1.14195 1.09913 1.21745 0.77215 0.87289 0.86010 1.90603 1.53132 1.18530 1.86057 1.21427 1.03809 0.98711 0.89964 1.21743 0.96660 0.97036 0.93583 0.92319 1.22525 0.96409 1.00602 0.96268 1.22310 0.99352 0.99264 0.94968 1.22979 0.97923 0.99755 0.98120 1.21982 0.99197 0.88148 0.92050 0.89857 1.58908 1.24010 1.05989 1.48339 0.97071 0.91656 0.94155 0.92595 0.76155 0.87217 0.87781 0.93960 0.91491 0.90956 0.92223 0.90519 0.90770 0.83570 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.43 2.56 44.25 0.11 14.54 16 3 H -0.01 -0.39 7.58 -2.38 -0.02 -0.40 16 4 C -0.55 -29.68 8.73 25.60 0.22 -29.45 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.69 5.31 84.66 0.45 1.14 16 7 N -0.92 -53.83 11.31 21.45 0.24 -53.58 16 8 Si 0.97 42.65 29.54 68.60 2.03 44.67 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.71 -30.45 5.07 -446.09 -2.26 -32.72 16 13 C 0.49 19.90 7.61 87.66 0.67 20.57 16 14 O -0.60 -29.89 14.39 -3.02 -0.04 -29.93 16 15 C -0.10 -2.77 4.28 29.85 0.13 -2.64 16 16 C -0.07 -1.85 2.38 -9.72 -0.02 -1.88 16 17 H 0.06 1.85 7.90 -2.39 -0.02 1.83 16 18 C -0.12 -3.19 5.75 31.89 0.18 -3.01 16 19 C -0.12 -2.42 6.83 31.67 0.22 -2.21 16 20 C -0.15 -2.30 6.58 31.32 0.21 -2.09 16 21 C 0.10 1.79 3.90 45.64 0.18 1.97 16 22 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 23 N -0.84 -12.56 7.94 -165.67 -1.31 -13.87 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 3.73 6.06 -2.39 -0.01 3.71 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.40 14.62 8.54 -92.71 -0.79 13.83 16 29 H 0.11 2.57 6.95 -2.38 -0.02 2.55 16 30 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.04 1.44 7.29 -2.39 -0.02 1.42 16 32 H 0.07 1.64 7.97 -2.39 -0.02 1.62 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 0.97 7.92 -2.39 -0.02 0.95 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.35 3.80 9.07 -89.69 -0.81 2.99 16 38 H 0.34 4.83 8.10 -89.69 -0.73 4.11 16 Total: -1.00 -67.66 303.16 0.39 -67.27 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -1.26 Total: 27.42 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 3.01 Total: -9.25 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.33 Total: -100.17 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.04 Total: -29.93 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.66 0.39 -67.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405864213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.427 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds