Wall clock time and date at job start Mon Mar 30 2020 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47231 * 89.99406 * 8 6 4 10 10 H 1.48500 * 109.47013 * 209.99751 * 8 6 4 11 11 H 1.48498 * 109.46665 * 329.99226 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46573 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01877 * 53.61377 * 16 15 13 18 18 C 1.54263 * 110.03575 * 292.16730 * 16 15 13 19 19 C 1.54889 * 104.19600 * 217.10829 * 18 16 15 20 20 C 1.54885 * 102.75118 * 37.94298 * 19 18 16 21 21 C 1.53877 * 110.02878 * 174.99916 * 16 15 13 22 22 H 1.08996 * 110.03312 * 238.56960 * 21 16 15 23 23 N 1.46903 * 110.03212 * 359.95392 * 21 16 15 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 27 27 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 29 29 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 30 30 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 31 31 H 1.09001 * 110.48249 * 335.78266 * 18 16 15 32 32 H 1.08998 * 110.48886 * 98.42730 * 18 16 15 33 33 H 1.09004 * 110.75536 * 279.62600 * 19 18 16 34 34 H 1.09004 * 110.91672 * 156.32681 * 19 18 16 35 35 H 1.08998 * 110.48948 * 203.38269 * 20 19 18 36 36 H 1.09004 * 110.48963 * 80.73285 * 20 19 18 37 37 H 1.00898 * 110.99427 * 179.97438 * 23 21 16 38 38 H 1.00896 * 111.00109 * 303.95239 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 6 2.7010 0.2545 4.7587 17 1 1.7319 0.7375 4.8837 18 6 3.7932 1.3151 4.5101 19 6 4.4037 1.5674 5.9110 20 6 4.4082 0.1528 6.5418 21 6 3.0920 -0.4846 6.0505 22 1 2.3131 -0.3595 6.8026 23 7 3.2966 -1.9123 5.7712 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7081 1.1610 -3.4844 28 1 2.2491 -1.6317 1.1525 29 1 1.9761 -1.5507 3.8325 30 1 3.6481 -1.1213 3.3985 31 1 4.5508 0.9298 3.8276 32 1 3.3530 2.2308 4.1152 33 1 3.7766 2.2462 6.4891 34 1 5.4184 1.9569 5.8289 35 1 4.4166 0.2201 7.6296 36 1 5.2651 -0.4202 6.1874 37 1 3.5543 -2.4113 6.6094 38 1 2.4770 -2.3186 5.3456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405864216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:15 Heat of formation + Delta-G solvation = -57.602504 kcal Electronic energy + Delta-G solvation = -17619.700169 eV Core-core repulsion = 14881.981079 eV Total energy + Delta-G solvation = -2737.719090 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.47855 -37.86295 -34.69512 -32.74995 -32.28273 -31.20966 -28.78775 -26.50937 -25.35949 -25.11320 -21.23362 -20.68947 -19.37189 -18.75321 -17.32786 -16.11212 -15.68997 -15.30258 -14.93384 -14.77703 -14.45358 -13.96711 -13.88867 -12.90244 -12.75674 -12.35672 -11.89430 -11.54295 -11.45463 -11.16082 -10.99790 -10.92422 -10.83574 -10.80131 -10.62648 -10.47126 -10.37432 -10.24348 -10.19508 -8.99334 -8.81719 -8.73535 -8.50223 -7.79685 -6.08325 -4.17303 3.26669 3.33402 3.35974 3.56791 4.17576 4.39410 4.49333 4.64071 4.71620 5.08597 5.23731 5.38772 5.41374 5.49193 5.60417 5.68797 5.75283 5.88264 5.98460 6.04000 6.18246 6.20500 6.32385 6.53162 6.61114 6.87494 7.01707 7.11844 7.21072 7.34274 7.55211 7.64102 7.75568 7.97864 8.20441 8.77659 8.85185 9.26435 9.51115 10.97624 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042165 B = 0.004882 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.896200 B = 5733.567398 C = 5831.479097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.713 5.713 13 C 0.496 3.504 14 O -0.558 6.558 15 C -0.122 4.122 16 C -0.069 4.069 17 H 0.076 0.924 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.117 4.117 21 C 0.087 3.913 22 H 0.035 0.965 23 N -0.843 5.843 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.089 0.911 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.334 0.666 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 -4.400 15.875 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.281 3.719 14 O -0.437 6.437 15 C -0.162 4.162 16 C -0.088 4.088 17 H 0.094 0.906 18 C -0.146 4.146 19 C -0.164 4.164 20 C -0.155 4.155 21 C -0.025 4.025 22 H 0.053 0.947 23 N -0.374 5.374 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.625 -3.184 15.252 16.252 hybrid contribution -0.476 -1.166 -0.256 1.285 sum 4.149 -4.350 14.995 16.155 Atomic orbital electron populations 1.22065 0.98669 0.98950 1.00765 1.18691 0.90885 0.93967 0.80288 0.93537 1.21244 1.32255 1.13118 0.90421 0.92133 1.24893 0.94873 0.94949 0.99045 1.69909 1.36017 1.22516 1.23776 0.86459 0.79172 0.79269 0.82265 1.20586 1.21095 1.19854 1.46531 1.65294 1.13480 1.10730 1.20673 0.78498 0.87656 0.85067 1.90621 1.51365 1.16383 1.85357 1.21603 1.03122 0.98449 0.93046 1.21542 0.99882 0.95097 0.92305 0.90577 1.22323 0.97065 0.99304 0.95877 1.22485 1.00683 0.96198 0.97024 1.22430 0.97699 0.96382 0.99024 1.22070 0.96237 0.88245 0.95904 0.94731 1.59033 1.42852 1.02908 1.32635 0.95613 0.96754 0.89281 0.92650 0.78048 0.90277 0.88590 0.91766 0.90675 0.91855 0.91703 0.92484 0.90556 0.85342 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.87 2.56 -69.09 -0.18 6.69 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.32 11.32 55.43 0.63 -24.69 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.16 5.07 -54.93 -0.28 -15.43 16 13 C 0.50 9.95 7.58 -10.98 -0.08 9.86 16 14 O -0.56 -13.27 14.50 5.56 0.08 -13.19 16 15 C -0.12 -1.77 4.04 -27.88 -0.11 -1.89 16 16 C -0.07 -0.95 2.54 -89.50 -0.23 -1.18 16 17 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 18 C -0.11 -1.55 5.43 -25.07 -0.14 -1.68 16 19 C -0.13 -1.41 6.91 -24.74 -0.17 -1.58 16 20 C -0.12 -1.20 6.53 -25.07 -0.16 -1.36 16 21 C 0.09 0.94 4.02 -66.59 -0.27 0.67 16 22 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 23 N -0.84 -7.97 8.15 -3.71 -0.03 -8.00 16 24 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 28 H 0.39 7.18 8.54 -40.82 -0.35 6.83 16 29 H 0.08 0.98 6.49 -51.93 -0.34 0.65 16 30 H 0.10 1.36 7.86 -51.93 -0.41 0.96 16 31 H 0.06 0.97 7.76 -51.93 -0.40 0.57 16 32 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 37 H 0.33 2.55 9.07 -39.29 -0.36 2.19 16 38 H 0.34 3.03 7.05 -39.29 -0.28 2.75 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.50 301.75 -7.61 -38.11 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.14 Total: 9.60 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.39 Total: -6.81 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.32 Total: -48.13 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.50 -7.61 -38.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405864216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.496 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds