Wall clock time and date at job start Mon Mar 30 2020 03:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47231 * 89.99406 * 8 6 4 10 10 H 1.48500 * 109.47013 * 209.99751 * 8 6 4 11 11 H 1.48498 * 109.46665 * 329.99226 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46573 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01877 * 53.61377 * 16 15 13 18 18 C 1.54263 * 110.03575 * 292.16730 * 16 15 13 19 19 C 1.54889 * 104.19600 * 217.10829 * 18 16 15 20 20 C 1.54885 * 102.75118 * 37.94298 * 19 18 16 21 21 C 1.53877 * 110.02878 * 174.99916 * 16 15 13 22 22 H 1.08996 * 110.03312 * 238.56960 * 21 16 15 23 23 N 1.46903 * 110.03212 * 359.95392 * 21 16 15 24 24 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 26 26 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 27 27 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 29 29 H 1.09000 * 109.47161 * 299.99737 * 15 13 12 30 30 H 1.09001 * 109.46740 * 59.99879 * 15 13 12 31 31 H 1.09001 * 110.48249 * 335.78266 * 18 16 15 32 32 H 1.08998 * 110.48886 * 98.42730 * 18 16 15 33 33 H 1.09004 * 110.75536 * 279.62600 * 19 18 16 34 34 H 1.09004 * 110.91672 * 156.32681 * 19 18 16 35 35 H 1.08998 * 110.48948 * 203.38269 * 20 19 18 36 36 H 1.09004 * 110.48963 * 80.73285 * 20 19 18 37 37 H 1.00898 * 110.99427 * 179.97438 * 23 21 16 38 38 H 1.00896 * 111.00109 * 303.95239 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 6 2.7010 0.2545 4.7587 17 1 1.7319 0.7375 4.8837 18 6 3.7932 1.3151 4.5101 19 6 4.4037 1.5674 5.9110 20 6 4.4082 0.1528 6.5418 21 6 3.0920 -0.4846 6.0505 22 1 2.3131 -0.3595 6.8026 23 7 3.2966 -1.9123 5.7712 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.7081 1.1610 -3.4844 28 1 2.2491 -1.6317 1.1525 29 1 1.9761 -1.5507 3.8325 30 1 3.6481 -1.1213 3.3985 31 1 4.5508 0.9298 3.8276 32 1 3.3530 2.2308 4.1152 33 1 3.7766 2.2462 6.4891 34 1 5.4184 1.9569 5.8289 35 1 4.4166 0.2201 7.6296 36 1 5.2651 -0.4202 6.1874 37 1 3.5543 -2.4113 6.6094 38 1 2.4770 -2.3186 5.3456 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405864216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:14 Heat of formation + Delta-G solvation = -79.523544 kcal Electronic energy + Delta-G solvation = -17620.650736 eV Core-core repulsion = 14881.981079 eV Total energy + Delta-G solvation = -2738.669658 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88453 -39.17310 -36.63977 -34.29546 -33.56428 -32.50307 -30.62539 -27.50267 -27.32793 -26.43739 -23.03630 -21.73260 -21.09733 -19.85907 -18.95036 -17.72542 -17.15018 -16.76903 -16.31041 -15.89938 -15.80681 -15.64187 -14.79967 -14.53079 -14.28935 -14.19376 -13.64658 -13.05261 -13.01140 -12.78200 -12.64096 -12.38828 -12.28122 -12.15189 -11.99768 -11.80694 -11.72681 -11.53773 -11.46924 -11.09455 -10.64743 -10.47618 -9.67730 -9.48159 -8.17119 -6.34880 1.44718 1.45780 1.56492 1.94061 2.37449 2.72835 3.13031 3.62325 3.66221 3.73526 4.05192 4.19637 4.43844 4.46299 4.54933 4.60382 4.72729 4.79265 4.91360 4.92203 4.95758 5.07974 5.12049 5.13742 5.23555 5.34598 5.37286 5.46033 5.53364 5.64148 5.71696 5.94097 6.11683 6.36949 6.71551 6.74019 7.05529 7.33755 7.65906 8.89208 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042165 B = 0.004882 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.896200 B = 5733.567398 C = 5831.479097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.710 5.710 13 C 0.489 3.511 14 O -0.600 6.600 15 C -0.104 4.104 16 C -0.071 4.071 17 H 0.056 0.944 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.111 4.111 21 C 0.096 3.904 22 H 0.045 0.955 23 N -0.846 5.846 24 H 0.040 0.960 25 H 0.010 0.990 26 H 0.065 0.935 27 H 0.265 0.735 28 H 0.404 0.596 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.349 0.651 38 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -6.764 17.067 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.359 5.359 13 C 0.277 3.723 14 O -0.482 6.482 15 C -0.144 4.144 16 C -0.091 4.091 17 H 0.074 0.926 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.016 4.016 22 H 0.063 0.937 23 N -0.379 5.379 24 H 0.059 0.941 25 H 0.029 0.971 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.239 0.761 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.163 0.837 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.628 -5.593 16.480 18.291 hybrid contribution -0.794 -0.364 -0.608 1.064 sum 4.835 -5.957 15.872 17.628 Atomic orbital electron populations 1.21878 0.98443 0.99353 0.99381 1.18293 0.91032 0.91776 0.82346 0.98843 1.21564 1.32506 1.13496 0.90893 0.90931 1.25830 0.94887 0.95570 1.02408 1.70063 1.37108 1.24023 1.24563 0.85321 0.78992 0.78022 0.77851 1.19535 1.21232 1.18819 1.46322 1.65471 1.14183 1.09903 1.21702 0.77241 0.87289 0.86029 1.90608 1.52971 1.18590 1.86060 1.21566 1.03931 0.98714 0.90188 1.21553 0.98716 0.95077 0.93725 0.92551 1.22290 0.97061 0.98107 0.97629 1.22464 1.00968 0.97503 0.94916 1.22400 0.97161 0.95043 1.00246 1.21929 0.96865 0.88797 0.93980 0.93661 1.58960 1.43103 1.02166 1.33656 0.94089 0.97074 0.91669 0.92590 0.76123 0.87228 0.87391 0.92994 0.94028 0.91269 0.90843 0.90247 0.90660 0.83689 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.40 2.56 44.25 0.11 14.51 16 3 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 4 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 8 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.71 -30.21 5.07 -446.11 -2.26 -32.47 16 13 C 0.49 19.83 7.58 87.66 0.66 20.49 16 14 O -0.60 -29.84 14.50 -3.01 -0.04 -29.88 16 15 C -0.10 -2.88 4.04 29.85 0.12 -2.76 16 16 C -0.07 -1.90 2.54 -10.07 -0.03 -1.93 16 17 H 0.06 1.73 7.92 -2.39 -0.02 1.71 16 18 C -0.11 -3.28 5.43 31.67 0.17 -3.10 16 19 C -0.12 -2.54 6.91 31.88 0.22 -2.32 16 20 C -0.11 -1.93 6.53 31.67 0.21 -1.72 16 21 C 0.10 1.81 4.02 45.64 0.18 1.99 16 22 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 23 N -0.85 -13.04 8.15 -165.66 -1.35 -14.39 16 24 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 27 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 28 H 0.40 14.43 8.54 -92.71 -0.79 13.64 16 29 H 0.11 2.40 6.49 -2.39 -0.02 2.39 16 30 H 0.11 2.82 7.86 -2.39 -0.02 2.80 16 31 H 0.05 1.59 7.76 -2.39 -0.02 1.57 16 32 H 0.04 1.45 7.66 -2.39 -0.02 1.43 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 37 H 0.35 3.96 9.07 -89.70 -0.81 3.15 16 38 H 0.35 4.87 7.05 -89.70 -0.63 4.24 16 Total: -1.00 -68.00 301.75 0.44 -67.56 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -1.17 Total: 27.35 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 2.99 Total: -9.23 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -3.37 Total: -100.37 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.04 Total: -29.88 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -68.00 0.44 -67.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405864216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.963 kcal (2) G-P(sol) polarization free energy of solvation -68.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds