Wall clock time and date at job start Mon Mar 30 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47145 * 59.99911 * 8 6 4 10 10 H 1.48499 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47228 * 300.00064 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 N 1.46903 * 109.47066 * 180.02562 * 15 13 12 17 17 C 1.47474 * 110.99965 * 74.02785 * 16 15 13 18 18 C 1.53511 * 87.93481 * 138.70312 * 17 16 15 19 19 C 1.53000 * 114.17324 * 220.33016 * 18 17 16 20 20 C 1.53001 * 114.16843 * 87.61895 * 18 17 16 21 21 C 1.47482 * 111.00029 * 170.00015 * 16 15 13 22 22 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 23 23 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 25 25 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 27 27 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 28 28 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 29 29 H 1.09002 * 113.47785 * 253.46918 * 17 16 15 30 30 H 1.09006 * 113.48033 * 23.93606 * 17 16 15 31 31 H 1.09005 * 109.46937 * 153.83876 * 19 18 17 32 32 H 1.08999 * 109.46942 * 273.83575 * 19 18 17 33 33 H 1.08992 * 109.47027 * 33.84261 * 19 18 17 34 34 H 1.08991 * 109.47492 * 326.16357 * 20 18 17 35 35 H 1.09006 * 109.46768 * 86.16432 * 20 18 17 36 36 H 1.09006 * 109.47011 * 206.16192 * 20 18 17 37 37 H 1.09001 * 113.47266 * 336.06074 * 21 16 15 38 38 H 1.08996 * 113.47517 * 106.47231 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8634 1.1597 2.4103 15 6 2.6435 -0.7302 3.5890 16 7 2.6936 0.2139 4.7134 17 6 1.3386 0.5145 5.2118 18 6 1.9044 0.4313 6.6364 19 6 0.9835 -0.2711 7.6362 20 6 2.4774 1.7494 7.1609 21 6 2.9442 -0.4909 5.9845 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.7088 1.1615 -3.4843 26 1 2.2452 -1.6328 1.1536 27 1 1.9670 -1.5493 3.8328 28 1 3.6416 -1.1266 3.4022 29 1 0.9876 1.5105 4.9415 30 1 0.6105 -0.2650 4.9875 31 1 1.5806 -0.6996 8.4412 32 1 0.2795 0.4505 8.0507 33 1 0.4345 -1.0644 7.1291 34 1 2.9253 2.3045 6.3367 35 1 1.6777 2.3418 7.6057 36 1 3.2374 1.5411 7.9141 37 1 2.6446 -1.5387 5.9664 38 1 3.9542 -0.3478 6.3685 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563718477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:59 Heat of formation + Delta-G solvation = -10.025838 kcal Electronic energy + Delta-G solvation = -17493.885351 eV Core-core repulsion = 14758.229340 eV Total energy + Delta-G solvation = -2735.656011 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61679 -38.40048 -34.74562 -33.05908 -32.30980 -29.42883 -27.63623 -27.35568 -25.92071 -25.23497 -22.95658 -20.77425 -19.35255 -18.44772 -17.15289 -15.94310 -15.69221 -15.48877 -14.92456 -14.63392 -14.27046 -13.87413 -13.24216 -13.21556 -12.79641 -12.54884 -12.35595 -12.06227 -11.94341 -11.59462 -11.44590 -11.14888 -11.05969 -10.92213 -10.72915 -10.51531 -10.30841 -10.21968 -10.14358 -9.03856 -9.00300 -8.66455 -8.51096 -7.85273 -6.10277 -4.19653 3.26531 3.31707 3.32838 3.46439 3.85426 4.17356 4.31449 4.47415 4.68304 5.08528 5.10596 5.21394 5.27560 5.37714 5.43760 5.49598 5.56865 5.63409 5.67915 5.80431 5.84936 5.98065 6.04338 6.11184 6.35104 6.42337 6.83556 6.97726 7.07010 7.17432 7.50281 7.60238 7.72299 7.94584 8.17278 8.71428 8.81732 9.20021 9.48231 10.95710 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058474 B = 0.004488 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.732014 B = 6237.816783 C = 6372.532672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.713 5.713 13 C 0.502 3.498 14 O -0.538 6.538 15 C -0.003 4.003 16 N -0.446 5.446 17 C 0.016 3.984 18 C -0.097 4.097 19 C -0.135 4.135 20 C -0.120 4.120 21 C 0.002 3.998 22 H 0.090 0.910 23 H 0.025 0.975 24 H 0.013 0.987 25 H 0.265 0.735 26 H 0.387 0.613 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -4.780 16.902 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.362 5.362 13 C 0.286 3.714 14 O -0.416 6.416 15 C -0.135 4.135 16 N -0.167 5.167 17 C -0.113 4.113 18 C -0.098 4.098 19 C -0.192 4.192 20 C -0.177 4.177 21 C -0.127 4.127 22 H 0.108 0.892 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.075 0.925 26 H 0.219 0.781 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.595 -3.261 16.480 16.875 hybrid contribution -0.100 -1.812 -0.869 2.012 sum 1.495 -5.074 15.611 16.483 Atomic orbital electron populations 1.22072 0.98595 0.98956 1.00815 1.18706 0.90895 0.94015 0.80016 0.93405 1.21190 1.32463 1.13205 0.90387 0.92174 1.24890 0.94823 0.94951 0.99037 1.69890 1.35857 1.22422 1.23961 0.86508 0.79182 0.79555 0.81836 1.20191 1.21118 1.20173 1.46513 1.65705 1.13377 1.10591 1.20195 0.78980 0.87733 0.84499 1.90653 1.50300 1.15670 1.84950 1.22674 1.02624 0.95059 0.93099 1.68840 1.18651 1.29004 1.00248 1.23903 0.91641 1.03181 0.92584 1.22038 0.96463 0.96722 0.94558 1.21714 0.98836 1.00071 0.98628 1.21468 1.00267 0.94896 1.01101 1.24020 1.00384 0.96763 0.91572 0.89183 0.95598 0.96781 0.92530 0.78132 0.91988 0.88293 0.89148 0.91786 0.92390 0.92252 0.92663 0.91153 0.92613 0.92669 0.91558 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.27 6.91 2.56 -69.08 -0.18 6.74 16 3 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 4 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.71 -15.18 5.07 -54.93 -0.28 -15.46 16 13 C 0.50 10.34 7.63 -10.98 -0.08 10.25 16 14 O -0.54 -13.34 15.42 5.56 0.09 -13.26 16 15 C 0.00 -0.04 5.31 -4.98 -0.03 -0.07 16 16 N -0.45 -6.71 5.87 -246.05 -1.44 -8.15 16 17 C 0.02 0.22 5.81 -7.55 -0.04 0.18 16 18 C -0.10 -1.06 1.53 -153.98 -0.24 -1.29 16 19 C -0.13 -1.17 9.30 37.16 0.35 -0.82 16 20 C -0.12 -1.25 9.22 37.16 0.34 -0.91 16 21 C 0.00 0.02 6.87 -7.54 -0.05 -0.03 16 22 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.39 7.06 8.54 -40.82 -0.35 6.71 16 27 H 0.06 0.80 7.56 -51.93 -0.39 0.41 16 28 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 30 H 0.06 0.87 7.49 -51.93 -0.39 0.48 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 34 H 0.07 0.88 7.92 -51.93 -0.41 0.46 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 38 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -31.17 310.12 -7.74 -38.91 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.40 Total: 4.38 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 0.02 Total: -2.28 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -1.09 Total: -48.23 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.17 -7.74 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563718477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.882 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds