Wall clock time and date at job start Mon Mar 30 2020 03:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47145 * 59.99911 * 8 6 4 10 10 H 1.48499 * 109.46916 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47228 * 300.00064 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 N 1.46903 * 109.47066 * 180.02562 * 15 13 12 17 17 C 1.47474 * 110.99965 * 74.02785 * 16 15 13 18 18 C 1.53511 * 87.93481 * 138.70312 * 17 16 15 19 19 C 1.53000 * 114.17324 * 220.33016 * 18 17 16 20 20 C 1.53001 * 114.16843 * 87.61895 * 18 17 16 21 21 C 1.47482 * 111.00029 * 170.00015 * 16 15 13 22 22 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 23 23 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 25 25 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 27 27 H 1.08998 * 109.47224 * 299.99701 * 15 13 12 28 28 H 1.09002 * 109.47054 * 60.00213 * 15 13 12 29 29 H 1.09002 * 113.47785 * 253.46918 * 17 16 15 30 30 H 1.09006 * 113.48033 * 23.93606 * 17 16 15 31 31 H 1.09005 * 109.46937 * 153.83876 * 19 18 17 32 32 H 1.08999 * 109.46942 * 273.83575 * 19 18 17 33 33 H 1.08992 * 109.47027 * 33.84261 * 19 18 17 34 34 H 1.08991 * 109.47492 * 326.16357 * 20 18 17 35 35 H 1.09006 * 109.46768 * 86.16432 * 20 18 17 36 36 H 1.09006 * 109.47011 * 206.16192 * 20 18 17 37 37 H 1.09001 * 113.47266 * 336.06074 * 21 16 15 38 38 H 1.08996 * 113.47517 * 106.47231 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8257 -2.5201 -4.0078 10 1 1.8268 -0.4198 -5.2205 11 1 3.8062 -1.1209 -4.0083 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8634 1.1597 2.4103 15 6 2.6435 -0.7302 3.5890 16 7 2.6936 0.2139 4.7134 17 6 1.3386 0.5145 5.2118 18 6 1.9044 0.4313 6.6364 19 6 0.9835 -0.2711 7.6362 20 6 2.4774 1.7494 7.1609 21 6 2.9442 -0.4909 5.9845 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 0.7088 1.1615 -3.4843 26 1 2.2452 -1.6328 1.1536 27 1 1.9670 -1.5493 3.8328 28 1 3.6416 -1.1266 3.4022 29 1 0.9876 1.5105 4.9415 30 1 0.6105 -0.2650 4.9875 31 1 1.5806 -0.6996 8.4412 32 1 0.2795 0.4505 8.0507 33 1 0.4345 -1.0644 7.1291 34 1 2.9253 2.3045 6.3367 35 1 1.6777 2.3418 7.6057 36 1 3.2374 1.5411 7.9141 37 1 2.6446 -1.5387 5.9664 38 1 3.9542 -0.3478 6.3685 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563718477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:58 Heat of formation + Delta-G solvation = -33.447319 kcal Electronic energy + Delta-G solvation = -17494.900983 eV Core-core repulsion = 14758.229340 eV Total energy + Delta-G solvation = -2736.671643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70484 -40.04367 -36.69036 -34.36532 -34.03514 -31.21614 -28.84266 -28.24163 -27.35163 -26.90839 -24.27205 -22.50310 -21.12020 -19.39962 -18.88014 -17.58250 -17.26881 -16.75902 -16.47492 -15.85937 -15.77325 -15.27314 -14.59268 -14.40156 -14.28339 -13.99733 -13.71723 -13.39790 -13.02183 -12.96464 -12.88696 -12.76112 -12.67743 -12.45390 -12.28000 -12.16349 -11.96212 -11.48090 -11.13435 -11.06210 -10.68226 -10.54624 -9.81111 -9.70650 -8.18213 -6.36429 1.44199 1.46794 1.54614 1.84247 2.32303 2.53997 3.11682 3.15207 3.36441 3.76534 3.96851 4.16604 4.25046 4.34423 4.35576 4.48260 4.67891 4.73042 4.80042 4.85322 4.88276 4.89063 5.06096 5.07422 5.16094 5.17107 5.31408 5.35671 5.41878 5.53954 5.60404 5.67295 5.89011 6.07461 6.08858 6.71604 6.99707 7.31867 7.59475 8.88055 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058474 B = 0.004488 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.732014 B = 6237.816783 C = 6372.532672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.007 1.007 4 C -0.549 4.549 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.708 5.708 13 C 0.496 3.504 14 O -0.588 6.588 15 C 0.011 3.989 16 N -0.479 5.479 17 C 0.008 3.992 18 C -0.086 4.086 19 C -0.130 4.130 20 C -0.120 4.120 21 C 0.010 3.990 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.009 0.991 25 H 0.266 0.734 26 H 0.405 0.595 27 H 0.093 0.907 28 H 0.122 0.878 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -7.429 18.148 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.358 5.358 13 C 0.282 3.718 14 O -0.469 6.469 15 C -0.120 4.120 16 N -0.202 5.202 17 C -0.122 4.122 18 C -0.086 4.086 19 C -0.188 4.188 20 C -0.177 4.177 21 C -0.118 4.118 22 H 0.084 0.916 23 H 0.060 0.940 24 H 0.028 0.972 25 H 0.075 0.925 26 H 0.240 0.760 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.478 -5.956 17.758 18.894 hybrid contribution -0.373 -0.914 -1.219 1.569 sum 2.105 -6.870 16.539 18.033 Atomic orbital electron populations 1.21877 0.98344 0.99386 0.99372 1.18301 0.91067 0.91775 0.82127 0.98871 1.21529 1.32705 1.13627 0.90800 0.90770 1.25840 0.94830 0.95571 1.02438 1.70051 1.37002 1.23967 1.24696 0.85363 0.78627 0.78724 0.77409 1.18689 1.21172 1.19584 1.46271 1.65701 1.14136 1.09721 1.21232 0.77597 0.87320 0.85622 1.90634 1.52229 1.18186 1.85809 1.22617 1.04161 0.94952 0.90303 1.68827 1.19196 1.30439 1.01720 1.23930 0.91625 1.01312 0.95285 1.22023 0.96324 0.97023 0.93280 1.21689 0.98641 1.00024 0.98400 1.21463 1.00940 0.94708 1.00565 1.24085 1.01092 0.97624 0.89000 0.91589 0.93990 0.97211 0.92536 0.76008 0.88894 0.85988 0.92788 0.91399 0.90487 0.91958 0.92339 0.93946 0.91924 0.90660 0.89314 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.15 16 2 C 0.27 14.48 2.56 44.25 0.11 14.59 16 3 H -0.01 -0.42 7.57 -2.39 -0.02 -0.44 16 4 C -0.55 -29.53 8.73 25.60 0.22 -29.30 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.69 11.32 21.45 0.24 -53.45 16 8 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 9 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.71 -30.04 5.07 -446.10 -2.26 -32.31 16 13 C 0.50 20.49 7.63 87.65 0.67 21.16 16 14 O -0.59 -30.42 15.42 -3.04 -0.05 -30.47 16 15 C 0.01 0.31 5.31 85.55 0.45 0.77 16 16 N -0.48 -13.88 5.87 -932.35 -5.47 -19.35 16 17 C 0.01 0.21 5.81 83.57 0.49 0.70 16 18 C -0.09 -1.70 1.53 -51.84 -0.08 -1.78 16 19 C -0.13 -1.86 9.30 71.98 0.67 -1.19 16 20 C -0.12 -2.36 9.22 71.98 0.66 -1.70 16 21 C 0.01 0.20 6.87 83.57 0.57 0.77 16 22 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 23 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.40 14.12 8.54 -92.71 -0.79 13.33 16 27 H 0.09 2.08 7.56 -2.39 -0.02 2.06 16 28 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.05 1.86 8.11 -2.39 -0.02 1.84 16 30 H 0.07 1.79 7.49 -2.38 -0.02 1.78 16 31 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 0.82 7.90 -2.39 -0.02 0.80 16 34 H 0.04 1.07 7.92 -2.39 -0.02 1.05 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.09 1.35 7.73 -2.39 -0.02 1.33 16 38 H 0.09 1.65 8.12 -2.39 -0.02 1.63 16 Total: -1.00 -70.30 310.12 -0.38 -70.69 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.24 Total: 21.50 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.89 Total: -0.96 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -7.49 Total: -105.11 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -0.05 Total: -30.47 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -70.30 -0.38 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563718477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.239 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds