Wall clock time and date at job start Mon Mar 30 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47132 * 2 1 4 4 C 1.46505 * 120.00115 * 269.99425 * 3 2 1 5 5 C 1.34781 * 120.00413 * 89.99706 * 3 2 1 6 6 O 1.21589 * 119.99454 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00189 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99570 * 179.97438 * 7 5 3 9 9 H 1.08993 * 110.82277 * 323.11563 * 8 7 5 10 10 C 1.54894 * 110.75336 * 86.45972 * 8 7 5 11 11 C 1.54266 * 104.31305 * 156.31761 * 10 8 7 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 8 13 13 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 14 14 C 1.50701 * 110.03004 * 240.66866 * 12 11 10 15 15 H 1.07996 * 120.00563 * 118.54459 * 14 12 11 16 16 C 1.37883 * 120.00158 * 298.54124 * 14 12 11 17 17 N 1.31522 * 119.99345 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00533 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47035 * 119.99836 * 18 16 14 21 21 H 1.48495 * 109.47191 * 240.00415 * 18 16 14 22 22 C 1.54266 * 106.59800 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47391 * 300.00141 * 1 2 3 25 25 H 1.09001 * 109.46711 * 60.00992 * 1 2 3 26 26 H 1.08995 * 109.47475 * 239.99338 * 2 1 3 27 27 H 1.09009 * 109.46719 * 119.99388 * 2 1 3 28 28 H 1.08996 * 109.47310 * 270.00097 * 4 3 2 29 29 H 1.09004 * 109.46591 * 30.00095 * 4 3 2 30 30 H 1.08998 * 109.47016 * 149.99745 * 4 3 2 31 31 H 0.97002 * 119.99937 * 359.97438 * 7 5 3 32 32 H 1.09002 * 110.48891 * 37.57187 * 10 8 7 33 33 H 1.08998 * 110.48494 * 275.06274 * 10 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 8 35 35 H 1.08995 * 110.03255 * 217.03136 * 11 10 8 36 36 H 0.96997 * 119.99897 * 180.02562 * 17 16 14 37 37 H 1.09005 * 110.48526 * 142.29451 * 22 12 11 38 38 H 1.09006 * 110.48581 * 264.93644 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 2.2429 2.0166 1.1672 6 8 2.0398 1.4436 2.2202 7 7 2.6917 3.2875 1.1671 8 6 2.9352 3.9782 2.4359 9 1 2.1880 3.6991 3.1786 10 6 4.3639 3.6826 2.9563 11 6 4.6884 4.8761 3.8784 12 6 3.7965 6.0424 3.4182 13 1 3.1386 6.3524 4.2301 14 6 4.6509 7.2020 2.9752 15 1 4.5954 7.5555 1.9562 16 6 5.5035 7.8119 3.8709 17 7 5.5714 7.3811 5.1117 18 14 6.5632 9.2488 3.3217 19 1 6.3024 9.5368 1.8884 20 1 6.2328 10.4467 4.1349 21 1 7.9962 8.9057 3.5053 22 6 2.9615 5.5172 2.2321 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.2920 1.9005 -1.5833 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1385 31 1 2.8534 3.7447 0.3271 32 1 5.0702 3.6379 2.1274 33 1 4.3791 2.7499 3.5200 34 1 4.4634 4.6200 4.9137 35 1 5.7392 5.1484 3.7806 36 1 6.1710 7.8103 5.7419 37 1 1.9505 5.9233 2.2678 38 1 3.4416 5.7690 1.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566573250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:09 Heat of formation + Delta-G solvation = -41.979759 kcal Electronic energy + Delta-G solvation = -17617.089133 eV Core-core repulsion = 14880.047496 eV Total energy + Delta-G solvation = -2737.041637 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.02495 -37.34253 -35.56703 -33.80777 -32.11195 -30.69110 -28.06532 -27.09355 -26.45065 -23.98223 -22.98469 -20.00552 -19.85172 -18.85461 -17.76200 -16.57856 -15.92551 -15.61203 -14.64811 -14.63487 -14.24725 -14.12844 -13.41926 -13.28025 -12.81568 -12.56128 -12.35653 -12.29986 -12.00122 -11.70733 -11.14411 -11.05151 -10.87414 -10.71194 -10.47632 -10.33942 -9.92090 -9.81201 -9.60935 -9.22574 -8.78323 -8.66095 -8.38833 -8.29045 -5.98581 -4.02146 2.81800 3.30245 3.38541 3.41336 3.44826 4.15823 4.45402 4.91255 4.95170 5.09465 5.31816 5.32518 5.37576 5.49405 5.55452 5.61230 5.74713 5.84733 5.92402 6.10858 6.38551 6.43390 6.50851 6.61093 6.68339 6.79803 6.96644 7.03597 7.08028 7.36847 7.41012 7.75575 7.94971 8.01309 8.19629 8.48134 8.85906 9.01186 9.61510 11.10589 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052144 B = 0.004793 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.845543 B = 5839.881622 C = 6106.866334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 N -0.640 5.640 4 C 0.081 3.919 5 C 0.702 3.298 6 O -0.591 6.591 7 N -0.733 5.733 8 C 0.151 3.849 9 H 0.084 0.916 10 C -0.132 4.132 11 C -0.090 4.090 12 C 0.047 3.953 13 H 0.029 0.971 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.117 4.117 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.259 0.741 37 H 0.049 0.951 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.652 -10.931 -12.511 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 N -0.379 5.379 4 C -0.063 4.063 5 C 0.404 3.596 6 O -0.469 6.469 7 N -0.388 5.388 8 C 0.047 3.953 9 H 0.103 0.897 10 C -0.171 4.171 11 C -0.128 4.128 12 C 0.028 3.972 13 H 0.047 0.953 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.155 4.155 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.705 -11.302 -11.551 17.496 hybrid contribution 0.760 1.057 -0.742 1.499 sum -5.945 -10.244 -12.293 17.070 Atomic orbital electron populations 1.22155 0.96374 1.01832 1.02273 1.21221 0.93948 0.81421 1.02763 1.47097 1.71181 1.14762 1.04892 1.21680 1.01169 0.97490 0.85960 1.15973 0.78239 0.81820 0.83606 1.90892 1.59534 1.66571 1.29938 1.45503 1.70504 1.12439 1.10309 1.22145 0.97393 0.92333 0.83439 0.89745 1.22787 0.95428 0.99278 0.99628 1.22011 1.01867 0.92913 0.96055 1.19205 0.93019 0.93187 0.91794 0.95267 1.21260 1.22478 1.14744 0.96579 0.92673 1.24990 0.97119 0.97064 0.94962 1.70002 1.37923 1.41126 1.03516 0.86599 0.80357 0.82690 0.78707 1.19865 1.21107 1.21116 1.22812 0.99825 0.91271 1.01610 0.91865 0.92083 0.92925 0.91018 0.89871 0.92768 0.91130 0.91434 0.77270 0.92765 0.93185 0.94161 0.91644 0.93131 0.93187 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 37.16 0.38 -1.24 16 2 C 0.13 1.38 6.13 -4.05 -0.02 1.36 16 3 N -0.64 -7.99 2.87 -187.35 -0.54 -8.53 16 4 C 0.08 0.70 10.20 59.85 0.61 1.31 16 5 C 0.70 11.73 8.28 -86.91 -0.72 11.01 16 6 O -0.59 -12.19 15.66 5.29 0.08 -12.11 16 7 N -0.73 -11.74 5.08 -56.53 -0.29 -12.03 16 8 C 0.15 2.88 3.20 -65.73 -0.21 2.67 16 9 H 0.08 1.73 7.71 -51.93 -0.40 1.33 16 10 C -0.13 -2.71 6.50 -25.07 -0.16 -2.87 16 11 C -0.09 -2.14 5.56 -25.62 -0.14 -2.29 16 12 C 0.05 1.16 2.84 -90.66 -0.26 0.90 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.51 -13.81 8.34 -34.44 -0.29 -14.10 16 15 H 0.06 1.46 7.55 -52.49 -0.40 1.06 16 16 C 0.06 1.66 5.07 -17.81 -0.09 1.57 16 17 N -0.89 -25.52 12.33 55.43 0.68 -24.84 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 C -0.12 -2.35 5.97 -24.87 -0.15 -2.49 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.56 8.07 -51.93 -0.42 0.15 16 27 H 0.08 1.04 7.42 -51.92 -0.39 0.66 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 31 H 0.39 5.23 6.27 -40.82 -0.26 4.98 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.71 7.17 -51.93 -0.37 1.34 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 1.17 7.57 -51.93 -0.39 0.78 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -31.40 306.89 -7.82 -39.22 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.31 Total: 1.77 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.05 Total: -4.19 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.14 Total: -45.39 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.40 -7.82 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566573250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.761 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds