Wall clock time and date at job start Mon Mar 30 2020 04:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46491 * 109.47132 * 2 1 4 4 C 1.46505 * 120.00115 * 269.99425 * 3 2 1 5 5 C 1.34781 * 120.00413 * 89.99706 * 3 2 1 6 6 O 1.21589 * 119.99454 * 359.97438 * 5 3 2 7 7 N 1.34778 * 120.00189 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99570 * 179.97438 * 7 5 3 9 9 H 1.08993 * 110.82277 * 323.11563 * 8 7 5 10 10 C 1.54894 * 110.75336 * 86.45972 * 8 7 5 11 11 C 1.54266 * 104.31305 * 156.31761 * 10 8 7 12 12 C 1.53869 * 106.60031 * 336.32486 * 11 10 8 13 13 H 1.08999 * 110.04012 * 119.28327 * 12 11 10 14 14 C 1.50701 * 110.03004 * 240.66866 * 12 11 10 15 15 H 1.07996 * 120.00563 * 118.54459 * 14 12 11 16 16 C 1.37883 * 120.00158 * 298.54124 * 14 12 11 17 17 N 1.31522 * 119.99345 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00533 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47044 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47035 * 119.99836 * 18 16 14 21 21 H 1.48495 * 109.47191 * 240.00415 * 18 16 14 22 22 C 1.54266 * 106.59800 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.47223 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47391 * 300.00141 * 1 2 3 25 25 H 1.09001 * 109.46711 * 60.00992 * 1 2 3 26 26 H 1.08995 * 109.47475 * 239.99338 * 2 1 3 27 27 H 1.09009 * 109.46719 * 119.99388 * 2 1 3 28 28 H 1.08996 * 109.47310 * 270.00097 * 4 3 2 29 29 H 1.09004 * 109.46591 * 30.00095 * 4 3 2 30 30 H 1.08998 * 109.47016 * 149.99745 * 4 3 2 31 31 H 0.97002 * 119.99937 * 359.97438 * 7 5 3 32 32 H 1.09002 * 110.48891 * 37.57187 * 10 8 7 33 33 H 1.08998 * 110.48494 * 275.06274 * 10 8 7 34 34 H 1.09001 * 110.03084 * 95.60669 * 11 10 8 35 35 H 1.08995 * 110.03255 * 217.03136 * 11 10 8 36 36 H 0.96997 * 119.99897 * 180.02562 * 17 16 14 37 37 H 1.09005 * 110.48526 * 142.29451 * 22 12 11 38 38 H 1.09006 * 110.48581 * 264.93644 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 2.2429 2.0166 1.1672 6 8 2.0398 1.4436 2.2202 7 7 2.6917 3.2875 1.1671 8 6 2.9352 3.9782 2.4359 9 1 2.1880 3.6991 3.1786 10 6 4.3639 3.6826 2.9563 11 6 4.6884 4.8761 3.8784 12 6 3.7965 6.0424 3.4182 13 1 3.1386 6.3524 4.2301 14 6 4.6509 7.2020 2.9752 15 1 4.5954 7.5555 1.9562 16 6 5.5035 7.8119 3.8709 17 7 5.5714 7.3811 5.1117 18 14 6.5632 9.2488 3.3217 19 1 6.3024 9.5368 1.8884 20 1 6.2328 10.4467 4.1349 21 1 7.9962 8.9057 3.5053 22 6 2.9615 5.5172 2.2321 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.2920 1.9005 -1.5833 29 1 1.5818 1.6876 -2.0284 30 1 2.0956 3.1409 -1.1385 31 1 2.8534 3.7447 0.3271 32 1 5.0702 3.6379 2.1274 33 1 4.3791 2.7499 3.5200 34 1 4.4634 4.6200 4.9137 35 1 5.7392 5.1484 3.7806 36 1 6.1710 7.8103 5.7419 37 1 1.9505 5.9233 2.2678 38 1 3.4416 5.7690 1.2864 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566573250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:09 Heat of formation + Delta-G solvation = -61.704079 kcal Electronic energy + Delta-G solvation = -17617.944444 eV Core-core repulsion = 14880.047496 eV Total energy + Delta-G solvation = -2737.896948 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28423 -38.96935 -36.73253 -35.41416 -33.90101 -31.71212 -29.91497 -28.62433 -27.44731 -25.81554 -24.10722 -21.54287 -21.29698 -20.55737 -18.92364 -18.34492 -17.39631 -16.79419 -16.54396 -16.18515 -15.70248 -15.28044 -14.51024 -14.45927 -14.26523 -14.03137 -13.61707 -13.43917 -13.10387 -12.97899 -12.78610 -12.70440 -12.44806 -12.27986 -12.16467 -11.88379 -11.68897 -11.54025 -11.23416 -11.06025 -10.70655 -10.45348 -10.09166 -9.46603 -8.08816 -6.19222 1.43109 1.44967 1.55923 1.71753 2.16846 2.46192 3.05265 3.22349 3.90377 4.05551 4.14062 4.21608 4.29176 4.34944 4.57310 4.67668 4.71930 4.78854 4.85231 4.85917 4.92388 4.99862 5.03254 5.05602 5.14887 5.32565 5.38106 5.44707 5.62075 5.67789 5.71493 5.93347 5.95352 6.00001 6.40499 6.92952 7.02968 7.48437 7.61042 9.00465 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052144 B = 0.004793 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.845543 B = 5839.881622 C = 6106.866334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.634 5.634 4 C 0.073 3.927 5 C 0.695 3.305 6 O -0.638 6.638 7 N -0.723 5.723 8 C 0.167 3.833 9 H 0.067 0.933 10 C -0.120 4.120 11 C -0.080 4.080 12 C 0.037 3.963 13 H -0.004 1.004 14 C -0.524 4.524 15 H 0.062 0.938 16 C 0.007 3.993 17 N -0.922 5.922 18 Si 0.955 3.045 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.101 4.101 23 H 0.082 0.918 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.408 0.592 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.019 0.981 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -11.111 -15.663 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.372 5.372 4 C -0.069 4.069 5 C 0.396 3.604 6 O -0.520 6.520 7 N -0.379 5.379 8 C 0.061 3.939 9 H 0.085 0.915 10 C -0.159 4.159 11 C -0.119 4.119 12 C 0.018 3.982 13 H 0.014 0.986 14 C -0.562 4.562 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.562 5.562 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.140 4.140 23 H 0.101 0.899 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.898 -11.487 -14.786 19.954 hybrid contribution 0.788 1.065 0.225 1.344 sum -6.110 -10.421 -14.561 18.920 Atomic orbital electron populations 1.22092 0.95562 1.02892 1.01372 1.21432 0.94620 0.80507 1.03330 1.47216 1.69809 1.15292 1.04848 1.21982 1.02818 0.97611 0.84532 1.16202 0.78122 0.81749 0.84298 1.90862 1.61415 1.67572 1.32153 1.45168 1.70545 1.12445 1.09768 1.21688 0.95748 0.91897 0.84552 0.91481 1.22643 0.96806 0.97326 0.99134 1.21803 0.99994 0.94321 0.95817 1.19211 0.93075 0.93204 0.92721 0.98579 1.21637 1.22512 1.15240 0.96857 0.91989 1.25813 0.98547 0.99768 0.94990 1.70142 1.38812 1.42557 1.04691 0.85547 0.78345 0.79214 0.78796 1.18499 1.21034 1.21012 1.22597 0.99714 0.91597 1.00045 0.89928 0.95363 0.91268 0.87270 0.92428 0.91480 0.88242 0.90969 0.75357 0.91606 0.93578 0.96192 0.94330 0.93250 0.91924 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 10.24 71.98 0.74 -2.04 16 2 C 0.12 2.36 6.13 86.38 0.53 2.89 16 3 N -0.63 -14.29 2.87 -864.91 -2.49 -16.78 16 4 C 0.07 0.96 10.20 127.77 1.30 2.27 16 5 C 0.70 22.43 8.28 179.05 1.48 23.91 16 6 O -0.64 -26.56 15.66 -3.99 -0.06 -26.63 16 7 N -0.72 -21.91 5.08 -451.04 -2.29 -24.20 16 8 C 0.17 6.26 3.20 46.42 0.15 6.41 16 9 H 0.07 2.79 7.71 -2.39 -0.02 2.77 16 10 C -0.12 -4.93 6.50 31.67 0.21 -4.72 16 11 C -0.08 -3.97 5.56 31.32 0.17 -3.79 16 12 C 0.04 1.85 2.84 -10.82 -0.03 1.82 16 13 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 14 C -0.52 -28.26 8.34 25.60 0.21 -28.05 16 15 H 0.06 3.19 7.55 -2.91 -0.02 3.17 16 16 C 0.01 0.40 5.07 84.65 0.43 0.83 16 17 N -0.92 -54.38 12.33 21.45 0.26 -54.11 16 18 Si 0.96 43.23 29.54 68.60 2.03 45.25 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.10 -3.96 5.97 31.80 0.19 -3.77 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.06 1.41 7.42 -2.38 -0.02 1.39 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 30 H 0.07 0.91 6.36 -2.39 -0.02 0.89 16 31 H 0.41 9.69 6.27 -92.71 -0.58 9.11 16 32 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 2.07 7.17 -2.39 -0.02 2.05 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.08 2.73 7.57 -2.38 -0.02 2.71 16 Total: -1.00 -69.78 306.89 3.28 -66.50 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.45 Total: 14.21 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.38 Total: -4.25 kcal Atomic # 7 Polarization: -90.58 SS G_CDS: -4.51 Total: -95.09 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.06 Total: -26.63 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.78 3.28 -66.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566573250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.798 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds