Wall clock time and date at job start Mon Mar 30 2020 04:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47081 * 2 1 4 4 C 1.37090 * 120.00190 * 263.52666 * 3 2 1 5 5 H 1.08001 * 120.00547 * 187.10339 * 4 3 2 6 6 C 1.38953 * 120.00078 * 7.10131 * 4 3 2 7 7 N 1.31407 * 119.99774 * 31.16172 * 6 4 3 8 8 Si 1.86802 * 120.00209 * 211.15600 * 6 4 3 9 9 H 1.48501 * 109.47032 * 94.99654 * 8 6 4 10 10 H 1.48492 * 109.47302 * 214.99736 * 8 6 4 11 11 H 1.48503 * 109.47007 * 335.00325 * 8 6 4 12 12 C 1.34774 * 119.99776 * 83.52432 * 3 2 1 13 13 O 1.21292 * 120.00300 * 180.02562 * 12 3 2 14 14 C 1.50707 * 120.00000 * 0.02562 * 12 3 2 15 15 N 1.46901 * 109.47201 * 187.24807 * 14 12 3 16 16 C 1.48556 * 111.00197 * 177.06001 * 15 14 12 17 17 C 1.54381 * 104.59415 * 200.95899 * 16 15 14 18 18 C 1.54258 * 105.06064 * 23.85581 * 17 16 15 19 19 H 1.09003 * 110.31958 * 241.00223 * 18 17 16 20 20 C 1.53001 * 110.32354 * 118.89612 * 18 17 16 21 21 C 1.48565 * 110.99903 * 61.64080 * 15 14 12 22 22 H 1.09003 * 109.47045 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46729 * 299.99719 * 1 2 3 24 24 H 1.09002 * 109.47288 * 59.99438 * 1 2 3 25 25 H 1.08999 * 109.46791 * 240.00580 * 2 1 3 26 26 H 1.09001 * 109.47214 * 120.00013 * 2 1 3 27 27 H 0.97005 * 119.99767 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.46982 * 67.24783 * 14 12 3 29 29 H 1.08998 * 109.47021 * 307.24805 * 14 12 3 30 30 H 1.08998 * 110.41125 * 82.18126 * 16 15 14 31 31 H 1.08995 * 110.41221 * 319.74004 * 16 15 14 32 32 H 1.08998 * 110.32516 * 264.95263 * 17 16 15 33 33 H 1.09005 * 110.32036 * 142.74812 * 17 16 15 34 34 H 1.08995 * 109.47489 * 61.45404 * 20 18 17 35 35 H 1.08993 * 109.46934 * 301.44776 * 20 18 17 36 36 H 1.09004 * 109.46853 * 181.45211 * 20 18 17 37 37 H 1.08994 * 110.41368 * 40.26006 * 21 15 14 38 38 H 1.09005 * 110.41187 * 277.82218 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3730 1.9829 -1.1796 5 1 2.8397 2.9569 -1.1702 6 6 2.1322 1.3397 -2.3876 7 7 1.0996 0.5361 -2.5095 8 14 3.2761 1.6174 -3.8380 9 1 4.2987 0.5412 -3.8751 10 1 2.4911 1.5979 -5.0983 11 1 3.9480 2.9338 -3.6936 12 6 2.1188 2.0604 1.1598 13 8 2.5227 3.2041 1.1598 14 6 1.7294 1.3988 2.4566 15 7 1.7624 2.3893 3.5409 16 6 1.3155 1.7891 4.8242 17 6 0.8890 2.9942 5.6898 18 6 0.5430 4.1093 4.6816 19 1 1.1938 4.9707 4.8318 20 6 -0.9236 4.5205 4.8268 21 6 0.7895 3.4841 3.2917 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9317 0.0868 -3.3527 28 1 2.4299 0.5938 2.6785 29 1 0.7227 0.9904 2.3682 30 1 2.1366 1.2518 5.2989 31 1 0.4696 1.1222 4.6578 32 1 1.7108 3.3076 6.3337 33 1 0.0141 2.7398 6.2880 34 1 -1.0936 4.9121 5.8297 35 1 -1.5622 3.6527 4.6624 36 1 -1.1596 5.2898 4.0915 37 1 -0.1388 3.0826 2.8854 38 1 1.2145 4.2231 2.6124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574291473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:13 Heat of formation + Delta-G solvation = -19.612582 kcal Electronic energy + Delta-G solvation = -18170.161330 eV Core-core repulsion = 15434.089606 eV Total energy + Delta-G solvation = -2736.071724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.25761 -37.84124 -34.98885 -33.01840 -31.77844 -29.59885 -29.27133 -27.16100 -25.31229 -23.92942 -22.18155 -20.99636 -19.78854 -18.70420 -16.80379 -16.21569 -15.59670 -15.06036 -14.66079 -14.42648 -13.83485 -13.68346 -12.95874 -12.91404 -12.69537 -12.50828 -12.19181 -11.90958 -11.76824 -11.68742 -11.27002 -11.07083 -10.92244 -10.74435 -10.61103 -10.43689 -10.30050 -10.25977 -10.13633 -9.83902 -8.84894 -8.32082 -7.89538 -7.73577 -6.38170 -3.70365 3.17276 3.29332 3.35216 3.92644 4.10642 4.37037 4.82285 4.84758 4.98913 5.07641 5.22192 5.39842 5.56284 5.63373 5.70983 5.80962 5.83870 5.89976 5.96564 6.01307 6.08082 6.18065 6.19392 6.23996 6.47564 6.52206 6.58657 6.67806 6.70827 7.18823 7.29122 7.35538 7.46138 7.74250 8.15771 8.55877 9.24466 9.49279 10.07794 10.64791 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038801 B = 0.006144 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.456849 B = 4556.554228 C = 4753.373904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.122 3.878 3 N -0.444 5.444 4 C -0.311 4.311 5 H 0.105 0.895 6 C 0.034 3.966 7 N -0.859 5.859 8 Si 0.910 3.090 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.269 1.269 12 C 0.446 3.554 13 O -0.576 6.576 14 C 0.035 3.965 15 N -0.489 5.489 16 C 0.029 3.971 17 C -0.118 4.118 18 C -0.100 4.100 19 H 0.077 0.923 20 C -0.142 4.142 21 C 0.042 3.958 22 H 0.037 0.963 23 H 0.023 0.977 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -1.073 11.009 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.002 4.002 3 N -0.164 5.164 4 C -0.438 4.438 5 H 0.123 0.877 6 C -0.169 4.169 7 N -0.498 5.498 8 Si 0.736 3.264 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.193 1.193 12 C 0.233 3.767 13 O -0.459 6.459 14 C -0.096 4.096 15 N -0.213 5.213 16 C -0.100 4.100 17 C -0.156 4.156 18 C -0.119 4.119 19 H 0.096 0.904 20 C -0.200 4.200 21 C -0.086 4.086 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.926 -0.443 10.854 11.250 hybrid contribution -0.461 -0.612 -0.894 1.177 sum -3.387 -1.055 9.960 10.573 Atomic orbital electron populations 1.22158 0.96775 0.99836 1.02177 1.21351 0.94405 0.83977 1.00506 1.43819 1.55945 1.11098 1.05552 1.19670 1.37104 1.04912 0.82131 0.87748 1.25116 0.95964 0.97318 0.98528 1.70164 1.22538 1.30685 1.26430 0.86176 0.80848 0.79098 0.80259 1.20506 1.21268 1.19348 1.19703 0.85392 0.87080 0.84490 1.90484 1.50892 1.18109 1.86466 1.22164 1.00580 0.94982 0.91917 1.65167 1.46640 1.08547 1.00977 1.23145 0.98698 0.96413 0.91703 1.22357 1.00714 0.95076 0.97449 1.21921 0.96512 0.98299 0.95153 0.90449 1.21848 0.95652 1.01242 1.01240 1.23234 0.93646 0.95257 0.96424 0.94355 0.95848 0.88684 0.88659 0.94931 0.92354 0.89688 0.93127 0.90510 0.94343 0.91323 0.91646 0.92835 0.92920 0.92521 0.94616 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.64 37.16 0.36 -2.79 16 2 C 0.12 2.70 5.04 -4.04 -0.02 2.68 16 3 N -0.44 -11.38 2.64 -114.81 -0.30 -11.69 16 4 C -0.31 -8.66 9.38 -14.94 -0.14 -8.80 16 5 H 0.10 3.11 7.35 -52.49 -0.39 2.73 16 6 C 0.03 0.89 4.74 -17.47 -0.08 0.81 16 7 N -0.86 -22.00 9.00 55.50 0.50 -21.50 16 8 Si 0.91 20.49 29.65 -169.99 -5.04 15.45 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.45 11.09 7.21 -10.98 -0.08 11.01 16 13 O -0.58 -16.19 14.12 5.55 0.08 -16.11 16 14 C 0.04 0.69 3.93 -4.97 -0.02 0.67 16 15 N -0.49 -9.07 5.17 -231.41 -1.20 -10.26 16 16 C 0.03 0.41 6.49 -2.18 -0.01 0.39 16 17 C -0.12 -1.46 6.65 -25.35 -0.17 -1.63 16 18 C -0.10 -1.39 3.65 -89.24 -0.33 -1.71 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.14 -1.66 8.91 37.16 0.33 -1.32 16 21 C 0.04 0.76 5.15 -2.18 -0.01 0.75 16 22 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.02 0.45 6.39 -51.92 -0.33 0.12 16 24 H 0.09 2.27 6.34 -51.93 -0.33 1.95 16 25 H 0.10 2.28 5.94 -51.93 -0.31 1.97 16 26 H 0.03 0.63 6.91 -51.93 -0.36 0.27 16 27 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.08 1.55 7.78 -51.93 -0.40 1.15 16 29 H 0.05 0.95 5.92 -51.93 -0.31 0.65 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 38 H 0.10 2.13 6.61 -51.93 -0.34 1.78 16 LS Contribution 294.49 15.07 4.44 4.44 Total: -1.00 -29.62 294.49 -7.77 -37.38 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.07 Total: 2.23 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.17 Total: 0.06 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -1.00 Total: -43.45 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.08 Total: -16.11 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.04 Total: 15.45 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.62 -7.77 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574291473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.771 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds