Wall clock time and date at job start Mon Mar 30 2020 04:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47400 * 2 1 4 4 C 1.37101 * 120.00160 * 95.10666 * 3 2 1 5 5 H 1.07997 * 120.00380 * 213.89653 * 4 3 2 6 6 C 1.38948 * 119.99612 * 33.89703 * 4 3 2 7 7 N 1.31409 * 120.00050 * 22.40707 * 6 4 3 8 8 Si 1.86805 * 120.00002 * 202.67500 * 6 4 3 9 9 H 1.48493 * 109.47115 * 269.72997 * 8 6 4 10 10 H 1.48503 * 109.46717 * 29.72595 * 8 6 4 11 11 H 1.48494 * 109.47086 * 149.72291 * 8 6 4 12 12 C 1.34779 * 120.00153 * 275.11425 * 3 2 1 13 13 O 1.21294 * 120.00292 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99919 * 359.97438 * 12 3 2 15 15 N 1.46900 * 109.47347 * 180.02562 * 14 12 3 16 16 C 1.47443 * 111.00010 * 69.87423 * 15 14 12 17 17 C 1.54322 * 107.23532 * 123.26092 * 16 15 14 18 18 C 1.55142 * 103.01538 * 22.28157 * 17 16 15 19 19 H 1.08997 * 110.98952 * 82.48017 * 18 17 16 20 20 C 1.53004 * 110.98618 * 206.25774 * 18 17 16 21 21 C 1.47844 * 111.00021 * 190.71728 * 15 14 12 22 22 H 1.08991 * 109.47262 * 60.00045 * 1 2 3 23 23 H 1.09000 * 109.46700 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46890 * 299.99839 * 1 2 3 25 25 H 1.09007 * 109.47311 * 240.00049 * 2 1 3 26 26 H 1.08999 * 109.47479 * 120.00577 * 2 1 3 27 27 H 0.97000 * 119.99692 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47351 * 300.00307 * 14 12 3 29 29 H 1.09004 * 109.47343 * 60.00188 * 14 12 3 30 30 H 1.09006 * 109.88765 * 242.66332 * 16 15 14 31 31 H 1.09001 * 109.88836 * 3.84901 * 16 15 14 32 32 H 1.08994 * 110.70763 * 140.66249 * 17 16 15 33 33 H 1.09003 * 110.70249 * 263.72706 * 17 16 15 34 34 H 1.09001 * 109.47252 * 58.54772 * 20 18 17 35 35 H 1.08996 * 109.46885 * 178.55002 * 20 18 17 36 36 H 1.09005 * 109.47022 * 298.54504 * 20 18 17 37 37 H 1.09000 * 110.37353 * 332.46394 * 21 15 14 38 38 H 1.08999 * 110.37417 * 94.80596 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3466 1.9922 1.1826 5 1 2.1776 3.0515 1.3082 6 6 2.8966 1.2487 2.2195 7 7 3.5041 0.1121 1.9627 8 14 2.7659 1.8609 3.9795 9 1 3.9450 2.7052 4.2988 10 1 1.5260 2.6637 4.1335 11 1 2.7224 0.7007 4.9053 12 6 2.1450 2.0512 -1.1626 13 8 2.5489 3.1949 -1.1625 14 6 1.7846 1.3794 -2.4625 15 7 2.0095 2.3124 -3.5747 16 6 3.4498 2.5491 -3.7828 17 6 3.7680 2.1748 -5.2457 18 6 2.3871 2.2879 -5.9436 19 1 2.1685 3.3216 -6.2115 20 6 2.3184 1.3798 -7.1731 21 6 1.4322 1.7883 -4.8308 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8878 -0.4071 2.6866 28 1 2.4069 0.4950 -2.5992 29 1 0.7352 1.0854 -2.4410 30 1 3.6816 3.6002 -3.6102 31 1 4.0302 1.9230 -3.1051 32 1 4.4774 2.8801 -5.6785 33 1 4.1522 1.1566 -5.3081 34 1 2.4984 0.3475 -6.8729 35 1 1.3313 1.4589 -7.6285 36 1 3.0767 1.6861 -7.8938 37 1 1.4085 0.6988 -4.8120 38 1 0.4297 2.1880 -4.9835 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574291582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:15 Heat of formation + Delta-G solvation = -48.549686 kcal Electronic energy + Delta-G solvation = -18011.436727 eV Core-core repulsion = 15274.110196 eV Total energy + Delta-G solvation = -2737.326530 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84280 -39.41427 -36.83831 -34.36879 -33.78463 -31.16865 -30.73241 -28.89031 -26.80633 -25.46682 -23.87829 -22.23039 -21.28740 -20.32173 -18.70599 -17.78067 -17.38640 -16.79165 -16.42610 -15.75907 -15.63036 -14.89564 -14.56531 -14.50313 -14.16887 -13.90176 -13.65809 -13.59855 -13.36983 -12.99590 -12.88785 -12.84464 -12.65664 -12.29936 -12.10216 -12.02669 -11.85077 -11.79043 -11.54470 -11.49354 -10.89931 -10.28961 -9.44146 -9.19599 -8.33593 -6.02171 1.36745 1.40932 1.54025 2.07579 2.29113 2.82247 3.02261 3.29747 3.68730 3.72783 3.97277 4.08349 4.21029 4.32970 4.34519 4.46364 4.52502 4.62765 4.65082 4.72192 4.84883 4.87676 4.89545 5.01904 5.02822 5.10786 5.21639 5.31458 5.32415 5.46059 5.48512 5.57655 5.95483 6.12229 6.25081 6.59133 7.22238 7.50712 8.13021 8.68705 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.005870 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.883058 B = 4769.018714 C = 5039.574790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.458 5.458 4 C -0.340 4.340 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.890 5.890 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.265 1.265 12 C 0.445 3.555 13 O -0.614 6.614 14 C 0.056 3.944 15 N -0.535 5.535 16 C 0.056 3.944 17 C -0.130 4.130 18 C -0.094 4.094 19 H 0.082 0.918 20 C -0.133 4.133 21 C 0.043 3.957 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.274 0.726 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 -4.324 -13.105 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 N -0.178 5.178 4 C -0.468 4.468 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.528 5.528 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.189 1.189 12 C 0.235 3.765 13 O -0.499 6.499 14 C -0.075 4.075 15 N -0.260 5.260 16 C -0.072 4.072 17 C -0.168 4.168 18 C -0.114 4.114 19 H 0.101 0.899 20 C -0.191 4.191 21 C -0.084 4.084 22 H 0.072 0.928 23 H 0.105 0.895 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.212 -3.480 -12.841 13.955 hybrid contribution 0.667 -0.323 1.136 1.356 sum -3.545 -3.803 -11.705 12.807 Atomic orbital electron populations 1.22097 0.95245 1.02499 1.01255 1.21685 0.94169 0.83524 1.03581 1.43820 1.56370 1.13099 1.04528 1.19352 1.41784 0.94768 0.90912 0.92188 1.26034 0.93540 0.96599 1.03716 1.69987 1.32570 1.16074 1.34155 0.85160 0.78717 0.78242 0.77549 1.20510 1.19324 1.18942 1.21132 0.81580 0.87733 0.86103 1.90464 1.51352 1.20581 1.87521 1.22011 1.02715 0.93320 0.89451 1.63154 1.13953 1.44333 1.04517 1.22594 0.87696 1.00312 0.96584 1.22876 0.98392 1.02306 0.93265 1.22273 0.93318 1.00875 0.94888 0.89946 1.21669 1.02848 0.98625 0.95924 1.23273 0.99345 0.98481 0.87259 0.92826 0.89526 0.94067 0.92004 0.89194 0.91679 0.92329 0.87437 0.92946 0.95755 0.89661 0.90721 0.92461 0.91276 0.91414 0.92423 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 10.15 71.98 0.73 -4.62 16 2 C 0.09 4.09 5.44 86.38 0.47 4.56 16 3 N -0.46 -24.27 2.56 -635.54 -1.62 -25.90 16 4 C -0.34 -19.93 8.97 84.04 0.75 -19.17 16 5 H 0.06 3.79 7.71 -2.91 -0.02 3.77 16 6 C 0.00 0.17 4.92 84.93 0.42 0.59 16 7 N -0.89 -48.57 11.34 21.66 0.25 -48.32 16 8 Si 0.98 43.10 29.61 68.60 2.03 45.13 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.45 23.18 7.24 87.66 0.63 23.82 16 13 O -0.61 -37.20 15.37 -3.07 -0.05 -37.24 16 14 C 0.06 2.20 3.63 85.56 0.31 2.51 16 15 N -0.53 -19.58 4.85 -890.08 -4.32 -23.90 16 16 C 0.06 2.05 5.65 86.65 0.49 2.54 16 17 C -0.13 -3.27 6.41 31.78 0.20 -3.06 16 18 C -0.09 -2.05 3.63 -9.41 -0.03 -2.08 16 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.13 -2.04 9.30 71.98 0.67 -1.37 16 21 C 0.04 1.12 6.15 86.77 0.53 1.65 16 22 H 0.05 1.74 6.61 -2.39 -0.02 1.72 16 23 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.06 2.42 6.65 -2.38 -0.02 2.41 16 26 H 0.09 4.37 5.35 -2.39 -0.01 4.36 16 27 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.06 2.17 7.23 -2.39 -0.02 2.15 16 29 H 0.11 3.67 6.48 -2.38 -0.02 3.65 16 30 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.02 0.99 7.31 -2.39 -0.02 0.98 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 34 H 0.06 0.86 8.10 -2.39 -0.02 0.85 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 37 H 0.06 1.34 7.67 -2.39 -0.02 1.32 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.57 301.15 2.49 -68.08 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.02 Total: 16.80 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 5.18 Total: 5.36 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -5.70 Total: -98.13 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.05 Total: -37.24 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.57 2.49 -68.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574291582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.532 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds