Wall clock time and date at job start Mon Mar 30 2020 04:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47130 * 2 1 4 4 C 1.37106 * 119.99933 * 264.74567 * 3 2 1 5 5 H 1.07991 * 119.99787 * 146.16107 * 4 3 2 6 6 C 1.38945 * 119.99699 * 326.16964 * 4 3 2 7 7 N 1.31412 * 120.00138 * 337.67491 * 6 4 3 8 8 Si 1.86799 * 119.99992 * 157.68343 * 6 4 3 9 9 H 1.48502 * 109.47129 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47139 * 119.99517 * 8 6 4 11 11 H 1.48505 * 109.47166 * 239.99787 * 8 6 4 12 12 C 1.34773 * 120.00466 * 84.74498 * 3 2 1 13 13 O 1.21291 * 120.00598 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99809 * 359.97438 * 12 3 2 15 15 N 1.46901 * 109.47179 * 179.97438 * 14 12 3 16 16 C 1.47964 * 111.00254 * 170.00257 * 15 14 12 17 17 C 1.53926 * 86.18150 * 137.58319 * 16 15 14 18 18 C 1.52997 * 113.73156 * 90.64016 * 17 16 15 19 19 C 1.53005 * 113.73567 * 221.92027 * 17 16 15 20 20 C 1.47957 * 111.00067 * 269.36109 * 15 14 12 21 21 H 1.09004 * 109.47564 * 299.99888 * 1 2 3 22 22 H 1.09000 * 109.47362 * 60.00809 * 1 2 3 23 23 H 1.09006 * 109.46793 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47222 * 239.99578 * 2 1 3 25 25 H 1.09002 * 109.47006 * 119.99870 * 2 1 3 26 26 H 0.96998 * 119.99999 * 179.97438 * 7 6 4 27 27 H 1.09010 * 109.46977 * 60.00379 * 14 12 3 28 28 H 1.09000 * 109.47488 * 300.00123 * 14 12 3 29 29 H 1.09001 * 113.75566 * 23.26517 * 16 15 14 30 30 H 1.08995 * 113.76037 * 251.90643 * 16 15 14 31 31 H 1.08999 * 109.47650 * 59.99937 * 18 17 16 32 32 H 1.09003 * 109.47621 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47245 * 299.99977 * 18 17 16 34 34 H 1.09002 * 109.46840 * 60.00453 * 19 17 16 35 35 H 1.08997 * 109.47101 * 180.02562 * 19 17 16 36 36 H 1.09003 * 109.47100 * 300.00734 * 19 17 16 37 37 H 1.09000 * 113.75847 * 108.10483 * 20 15 14 38 38 H 1.08995 * 113.86537 * 336.75076 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1824 5 1 2.1814 3.0505 -1.3089 6 6 2.9006 1.2465 -2.2178 7 7 3.5052 0.1087 -1.9593 8 14 2.7825 1.8628 -3.9773 9 1 2.0582 3.1590 -4.0002 10 1 4.1485 2.0488 -4.5293 11 1 2.0465 0.8703 -4.8011 12 6 2.1422 2.0522 1.1622 13 8 2.5460 3.1959 1.1622 14 6 1.7778 1.3819 2.4618 15 7 2.0003 2.3158 3.5737 16 6 1.4338 1.7851 4.8334 17 6 2.7254 2.2855 5.5046 18 6 2.6291 3.7174 6.0347 19 6 3.3069 1.3071 6.5272 20 6 3.3722 2.1827 4.1115 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8897 -0.4113 -2.6822 27 1 2.3992 0.4972 2.6010 28 1 0.7282 1.0886 2.4377 29 1 1.3253 0.7006 4.8435 30 1 0.5360 2.3066 5.1652 31 1 1.8336 3.7772 6.7775 32 1 3.5765 3.9995 6.4940 33 1 2.4083 4.3958 5.2106 34 1 3.5422 0.3637 6.0344 35 1 4.2150 1.7288 6.9579 36 1 2.5775 1.1319 7.3180 37 1 4.0232 3.0219 3.8667 38 1 3.8324 1.2152 3.9113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574769242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:10 Heat of formation + Delta-G solvation = 2.813758 kcal Electronic energy + Delta-G solvation = -17978.592490 eV Core-core repulsion = 15243.493246 eV Total energy + Delta-G solvation = -2735.099244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15901 -38.12217 -34.85706 -32.80986 -31.88167 -29.40105 -27.97691 -27.31201 -25.91611 -24.80198 -22.49908 -21.83264 -18.79844 -18.20088 -16.74371 -16.02166 -15.46445 -15.11614 -14.81409 -14.55745 -13.88622 -13.69637 -13.08202 -12.97390 -12.85627 -12.56510 -12.43098 -11.93359 -11.85713 -11.72266 -11.43658 -11.13605 -11.05139 -10.89135 -10.83908 -10.35389 -10.26000 -10.14666 -10.12126 -10.03537 -8.90626 -8.55578 -8.03296 -7.41231 -6.27636 -3.87591 3.18683 3.29284 3.36475 4.00986 4.07640 4.29907 4.44062 4.85125 4.96558 5.06904 5.25014 5.35306 5.52042 5.62553 5.65369 5.71764 5.79585 5.81786 5.83487 5.93473 5.98092 6.04595 6.12721 6.17617 6.25091 6.31009 6.38191 6.51656 6.53592 6.76383 6.91372 7.29695 7.36298 7.65258 8.32864 8.60771 9.28578 9.50033 10.13268 10.76392 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.005855 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.835176 B = 4781.406480 C = 5010.729169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.448 5.448 4 C -0.301 4.301 5 H 0.091 0.909 6 C 0.032 3.968 7 N -0.873 5.873 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.465 3.535 13 O -0.563 6.563 14 C 0.007 3.993 15 N -0.450 5.450 16 C 0.004 3.996 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.137 4.137 20 C 0.018 3.982 21 H 0.040 0.960 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.113 0.887 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 -2.592 12.144 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.028 4.028 3 N -0.169 5.169 4 C -0.429 4.429 5 H 0.109 0.891 6 C -0.171 4.171 7 N -0.512 5.512 8 Si 0.742 3.258 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.207 1.207 12 C 0.252 3.748 13 O -0.444 6.444 14 C -0.125 4.125 15 N -0.172 5.172 16 C -0.125 4.125 17 C -0.096 4.096 18 C -0.179 4.179 19 C -0.195 4.195 20 C -0.111 4.111 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.269 -1.530 11.729 12.271 hybrid contribution 0.172 -0.974 -0.762 1.248 sum -3.097 -2.504 10.967 11.667 Atomic orbital electron populations 1.22216 0.98360 1.00191 1.01481 1.21557 0.91627 0.85744 1.03888 1.43547 1.56627 1.11822 1.04921 1.19489 1.39170 0.95428 0.88783 0.89095 1.25306 0.94716 0.96588 1.00461 1.69933 1.33209 1.15460 1.32637 0.86040 0.78066 0.79087 0.82563 1.19207 1.20858 1.20681 1.20089 0.82433 0.88007 0.84292 1.90512 1.49071 1.18334 1.86501 1.22631 1.01786 0.94607 0.93436 1.68355 1.06439 1.41513 1.00882 1.24099 0.98041 0.98602 0.91728 1.22284 0.96151 0.96645 0.94527 1.21504 1.01045 0.94291 1.01021 1.21773 1.00635 0.98504 0.98556 1.24078 0.92976 1.01626 0.92438 0.94049 0.92384 0.93200 0.86894 0.93860 0.92435 0.92454 0.89694 0.91739 0.89711 0.92801 0.92781 0.91145 0.92684 0.92434 0.92530 0.89353 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.15 37.16 0.38 -2.65 16 2 C 0.10 2.13 5.43 -4.05 -0.02 2.11 16 3 N -0.45 -11.68 2.56 -114.82 -0.29 -11.97 16 4 C -0.30 -8.56 8.98 -14.93 -0.13 -8.69 16 5 H 0.09 2.73 7.70 -52.49 -0.40 2.33 16 6 C 0.03 0.87 4.92 -17.47 -0.09 0.78 16 7 N -0.87 -23.86 11.33 55.50 0.63 -23.23 16 8 Si 0.92 20.95 29.61 -169.99 -5.03 15.92 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 C 0.46 11.86 7.64 -10.99 -0.08 11.78 16 13 O -0.56 -16.51 16.25 5.55 0.09 -16.42 16 14 C 0.01 0.14 3.89 -4.98 -0.02 0.12 16 15 N -0.45 -8.22 5.51 -239.42 -1.32 -9.54 16 16 C 0.00 0.06 7.09 -2.77 -0.02 0.04 16 17 C -0.10 -1.22 1.42 -153.58 -0.22 -1.44 16 18 C -0.12 -1.46 9.14 37.16 0.34 -1.12 16 19 C -0.14 -1.41 9.22 37.16 0.34 -1.07 16 20 C 0.02 0.29 7.03 -2.77 -0.02 0.27 16 21 H 0.04 0.72 6.59 -51.93 -0.34 0.37 16 22 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.11 2.76 5.34 -51.93 -0.28 2.49 16 25 H 0.04 0.87 6.66 -51.93 -0.35 0.53 16 26 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 27 H 0.06 1.07 6.65 -51.92 -0.35 0.72 16 28 H 0.08 1.53 6.47 -51.93 -0.34 1.19 16 29 H 0.06 0.81 7.88 -51.93 -0.41 0.40 16 30 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 34 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.58 8.10 -51.93 -0.42 1.16 16 38 H 0.07 1.04 7.30 -51.93 -0.38 0.66 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -31.80 305.35 -7.05 -38.85 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.18 Total: 1.66 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 0.46 Total: 0.13 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.98 Total: -44.74 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.09 Total: -16.42 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.80 -7.05 -38.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574769242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.664 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds