Wall clock time and date at job start Mon Mar 30 2020 04:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47130 * 2 1 4 4 C 1.37106 * 119.99933 * 264.74567 * 3 2 1 5 5 H 1.07991 * 119.99787 * 146.16107 * 4 3 2 6 6 C 1.38945 * 119.99699 * 326.16964 * 4 3 2 7 7 N 1.31412 * 120.00138 * 337.67491 * 6 4 3 8 8 Si 1.86799 * 119.99992 * 157.68343 * 6 4 3 9 9 H 1.48502 * 109.47129 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47139 * 119.99517 * 8 6 4 11 11 H 1.48505 * 109.47166 * 239.99787 * 8 6 4 12 12 C 1.34773 * 120.00466 * 84.74498 * 3 2 1 13 13 O 1.21291 * 120.00598 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99809 * 359.97438 * 12 3 2 15 15 N 1.46901 * 109.47179 * 179.97438 * 14 12 3 16 16 C 1.47964 * 111.00254 * 170.00257 * 15 14 12 17 17 C 1.53926 * 86.18150 * 137.58319 * 16 15 14 18 18 C 1.52997 * 113.73156 * 90.64016 * 17 16 15 19 19 C 1.53005 * 113.73567 * 221.92027 * 17 16 15 20 20 C 1.47957 * 111.00067 * 269.36109 * 15 14 12 21 21 H 1.09004 * 109.47564 * 299.99888 * 1 2 3 22 22 H 1.09000 * 109.47362 * 60.00809 * 1 2 3 23 23 H 1.09006 * 109.46793 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47222 * 239.99578 * 2 1 3 25 25 H 1.09002 * 109.47006 * 119.99870 * 2 1 3 26 26 H 0.96998 * 119.99999 * 179.97438 * 7 6 4 27 27 H 1.09010 * 109.46977 * 60.00379 * 14 12 3 28 28 H 1.09000 * 109.47488 * 300.00123 * 14 12 3 29 29 H 1.09001 * 113.75566 * 23.26517 * 16 15 14 30 30 H 1.08995 * 113.76037 * 251.90643 * 16 15 14 31 31 H 1.08999 * 109.47650 * 59.99937 * 18 17 16 32 32 H 1.09003 * 109.47621 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47245 * 299.99977 * 18 17 16 34 34 H 1.09002 * 109.46840 * 60.00453 * 19 17 16 35 35 H 1.08997 * 109.47101 * 180.02562 * 19 17 16 36 36 H 1.09003 * 109.47100 * 300.00734 * 19 17 16 37 37 H 1.09000 * 113.75847 * 108.10483 * 20 15 14 38 38 H 1.08995 * 113.86537 * 336.75076 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1824 5 1 2.1814 3.0505 -1.3089 6 6 2.9006 1.2465 -2.2178 7 7 3.5052 0.1087 -1.9593 8 14 2.7825 1.8628 -3.9773 9 1 2.0582 3.1590 -4.0002 10 1 4.1485 2.0488 -4.5293 11 1 2.0465 0.8703 -4.8011 12 6 2.1422 2.0522 1.1622 13 8 2.5460 3.1959 1.1622 14 6 1.7778 1.3819 2.4618 15 7 2.0003 2.3158 3.5737 16 6 1.4338 1.7851 4.8334 17 6 2.7254 2.2855 5.5046 18 6 2.6291 3.7174 6.0347 19 6 3.3069 1.3071 6.5272 20 6 3.3722 2.1827 4.1115 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.8897 -0.4113 -2.6822 27 1 2.3992 0.4972 2.6010 28 1 0.7282 1.0886 2.4377 29 1 1.3253 0.7006 4.8435 30 1 0.5360 2.3066 5.1652 31 1 1.8336 3.7772 6.7775 32 1 3.5765 3.9995 6.4940 33 1 2.4083 4.3958 5.2106 34 1 3.5422 0.3637 6.0344 35 1 4.2150 1.7288 6.9579 36 1 2.5775 1.1319 7.3180 37 1 4.0232 3.0219 3.8667 38 1 3.8324 1.2152 3.9113 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574769242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:10 Heat of formation + Delta-G solvation = -19.224925 kcal Electronic energy + Delta-G solvation = -17979.548159 eV Core-core repulsion = 15243.493246 eV Total energy + Delta-G solvation = -2736.054913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46198 -39.96295 -36.84883 -34.28806 -33.67050 -31.17786 -29.43235 -28.23043 -27.11393 -26.70146 -24.10710 -23.36607 -20.59378 -19.33004 -18.73608 -17.84867 -17.05645 -16.54608 -16.50485 -15.87596 -15.62662 -15.19527 -14.54230 -14.45243 -14.22504 -13.94549 -13.72431 -13.58008 -13.23576 -12.99300 -12.86908 -12.75160 -12.65839 -12.45471 -12.17840 -12.04641 -11.95910 -11.78997 -11.36119 -11.19921 -10.90605 -10.34073 -9.58110 -9.45284 -8.34431 -6.03309 1.34881 1.40129 1.54314 2.07403 2.28401 2.81613 3.00853 3.27607 3.40810 3.76085 4.04624 4.13865 4.18746 4.28384 4.33308 4.44679 4.48409 4.63299 4.66953 4.77910 4.83657 4.86369 4.88512 5.00898 5.05968 5.16680 5.17779 5.30310 5.31543 5.45317 5.46934 5.55383 5.56902 6.03650 6.24121 6.58283 7.21727 7.50203 8.12936 8.67970 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.005855 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.835176 B = 4781.406480 C = 5010.729169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.459 5.459 4 C -0.340 4.340 5 H 0.059 0.941 6 C 0.002 3.998 7 N -0.890 5.890 8 Si 0.980 3.020 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.447 3.553 13 O -0.617 6.617 14 C 0.025 3.975 15 N -0.485 5.485 16 C 0.011 3.989 17 C -0.080 4.080 18 C -0.120 4.120 19 C -0.131 4.131 20 C 0.007 3.993 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.274 0.726 27 H 0.070 0.930 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.282 -4.307 13.371 14.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 N -0.180 5.180 4 C -0.468 4.468 5 H 0.077 0.923 6 C -0.200 4.200 7 N -0.528 5.528 8 Si 0.804 3.196 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.236 3.764 13 O -0.502 6.502 14 C -0.107 4.107 15 N -0.208 5.208 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.177 4.177 19 C -0.189 4.189 20 C -0.122 4.122 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.105 0.895 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.230 -3.295 12.968 14.033 hybrid contribution 0.514 -0.434 -1.147 1.330 sum -3.716 -3.729 11.821 12.941 Atomic orbital electron populations 1.22101 0.95315 1.02492 1.01192 1.21680 0.94103 0.83498 1.03631 1.43853 1.56395 1.13133 1.04576 1.19383 1.41673 0.94689 0.91021 0.92349 1.26039 0.93548 0.96629 1.03744 1.69990 1.32712 1.16002 1.34091 0.85092 0.78167 0.78643 0.77700 1.19860 1.20379 1.18569 1.21148 0.81493 0.87650 0.86092 1.90461 1.51434 1.20771 1.87554 1.22447 1.02956 0.94422 0.90852 1.68314 1.07923 1.42324 1.02226 1.24220 0.98698 0.99900 0.88942 1.22217 0.94805 0.97735 0.93256 1.21499 1.02533 0.93241 1.00463 1.21738 1.01400 0.97600 0.98144 1.24130 0.92173 1.00544 0.95361 0.92901 0.94116 0.89497 0.89182 0.91907 0.91666 0.91202 0.87625 0.89680 0.88628 0.90572 0.91600 0.94145 0.92568 0.91666 0.90437 0.92261 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 10.15 71.98 0.73 -4.63 16 2 C 0.09 4.11 5.43 86.38 0.47 4.58 16 3 N -0.46 -24.48 2.56 -635.57 -1.63 -26.11 16 4 C -0.34 -20.05 8.98 84.04 0.75 -19.29 16 5 H 0.06 3.74 7.70 -2.92 -0.02 3.72 16 6 C 0.00 0.13 4.92 84.93 0.42 0.55 16 7 N -0.89 -48.68 11.33 21.66 0.25 -48.43 16 8 Si 0.98 43.33 29.61 68.60 2.03 45.36 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 12 C 0.45 23.47 7.64 87.66 0.67 24.14 16 13 O -0.62 -38.12 16.25 -3.06 -0.05 -38.17 16 14 C 0.02 0.95 3.89 85.56 0.33 1.29 16 15 N -0.49 -17.57 5.51 -911.39 -5.02 -22.59 16 16 C 0.01 0.26 7.09 86.40 0.61 0.88 16 17 C -0.08 -1.88 1.42 -51.54 -0.07 -1.96 16 18 C -0.12 -2.72 9.14 71.98 0.66 -2.06 16 19 C -0.13 -2.27 9.22 71.98 0.66 -1.61 16 20 C 0.01 0.23 7.03 86.41 0.61 0.84 16 21 H 0.05 1.72 6.59 -2.39 -0.02 1.70 16 22 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.09 4.38 5.34 -2.39 -0.01 4.37 16 25 H 0.06 2.44 6.66 -2.39 -0.02 2.43 16 26 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.07 2.50 6.65 -2.38 -0.02 2.48 16 28 H 0.11 3.58 6.47 -2.39 -0.02 3.56 16 29 H 0.09 1.80 7.88 -2.39 -0.02 1.78 16 30 H 0.10 2.19 8.10 -2.39 -0.02 2.17 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.15 7.98 -2.39 -0.02 1.13 16 34 H 0.06 0.98 7.94 -2.39 -0.02 0.96 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 38 H 0.07 2.14 7.30 -2.39 -0.02 2.12 16 Total: -1.00 -72.22 305.35 2.44 -69.77 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 1.02 Total: 17.44 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.84 Total: 2.72 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -6.40 Total: -97.13 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.05 Total: -38.17 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.22 2.44 -69.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574769242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.547 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds