Wall clock time and date at job start Mon Mar 30 2020 03:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47187 * 2 1 4 4 C 1.34783 * 120.00343 * 270.00062 * 3 2 1 5 5 O 1.21683 * 120.00497 * 179.97438 * 4 3 2 6 6 C 1.46371 * 119.99552 * 359.97438 * 4 3 2 7 7 H 1.08007 * 120.00209 * 355.03875 * 6 4 3 8 8 C 1.40050 * 119.99910 * 175.04464 * 6 4 3 9 9 N 1.30666 * 119.99882 * 6.21650 * 8 6 4 10 10 Si 1.86800 * 119.99987 * 186.22256 * 8 6 4 11 11 H 1.48501 * 109.47393 * 94.97742 * 10 8 6 12 12 H 1.48497 * 109.47130 * 214.97757 * 10 8 6 13 13 H 1.48497 * 109.47235 * 334.97870 * 10 8 6 14 14 C 1.46500 * 120.00155 * 89.99644 * 3 2 1 15 15 H 1.09001 * 110.87502 * 3.84999 * 14 3 2 16 16 C 1.55400 * 111.05909 * 127.58481 * 14 3 2 17 17 C 1.54312 * 102.89954 * 153.65203 * 16 14 3 18 18 N 1.47435 * 107.37367 * 337.89696 * 17 16 14 19 19 C 1.46903 * 111.00309 * 236.66189 * 18 17 16 20 20 C 1.53000 * 109.46765 * 290.12279 * 19 18 17 21 21 C 1.47845 * 108.56622 * 358.92962 * 18 17 16 22 22 H 1.08996 * 109.47152 * 300.00433 * 1 2 3 23 23 H 1.09007 * 109.47034 * 60.00051 * 1 2 3 24 24 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47049 * 240.00273 * 2 1 3 26 26 H 1.08994 * 109.47288 * 119.99899 * 2 1 3 27 27 H 0.97003 * 119.99770 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.67502 * 35.34968 * 16 14 3 29 29 H 1.08998 * 110.84564 * 272.04124 * 16 14 3 30 30 H 1.09000 * 109.89076 * 218.40483 * 17 16 14 31 31 H 1.09002 * 109.88841 * 97.38893 * 17 16 14 32 32 H 1.08999 * 109.47321 * 50.12338 * 19 18 17 33 33 H 1.08999 * 109.47257 * 170.12688 * 19 18 17 34 34 H 1.09005 * 109.47227 * 59.99937 * 20 19 18 35 35 H 1.09000 * 109.47081 * 179.97438 * 20 19 18 36 36 H 1.08991 * 109.47598 * 299.99969 * 20 19 18 37 37 H 1.08996 * 110.37674 * 142.92603 * 21 18 17 38 38 H 1.08998 * 110.37079 * 265.26288 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6482 3.1640 -1.1672 6 6 1.9995 1.3264 -2.4348 7 1 1.7172 0.2839 -2.4366 8 6 2.1329 2.0178 -3.6454 9 7 2.5911 3.2415 -3.6519 10 14 1.6554 1.1907 -5.2509 11 1 0.2604 1.5593 -5.6020 12 1 2.5722 1.6381 -6.3300 13 1 1.7541 -0.2830 -5.0969 14 6 2.2624 2.0718 1.2687 15 1 2.0983 1.4025 2.1132 16 6 3.6943 2.6742 1.3101 17 6 3.5431 3.8552 2.2917 18 7 2.1154 4.2220 2.3225 19 6 1.9273 5.6358 1.9705 20 6 2.4680 6.5181 3.0975 21 6 1.3829 3.3413 1.3877 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.6831 3.7205 -4.4904 28 1 3.9913 3.0291 0.3231 29 1 4.4106 1.9460 1.6905 30 1 4.1362 4.7022 1.9471 31 1 3.8702 3.5543 3.2870 32 1 2.4645 5.8551 1.0478 33 1 0.8654 5.8369 1.8293 34 1 3.5300 6.3169 3.2388 35 1 2.3289 7.5671 2.8362 36 1 1.9308 6.2988 4.0202 37 1 0.4036 3.0878 1.7937 38 1 1.2784 3.8231 0.4156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598040269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:24 Heat of formation + Delta-G solvation = -31.345173 kcal Electronic energy + Delta-G solvation = -18408.735179 eV Core-core repulsion = 15672.154692 eV Total energy + Delta-G solvation = -2736.580487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.11645 -36.93955 -34.28181 -32.74352 -32.19764 -29.33914 -28.59832 -27.42110 -25.66308 -22.58213 -22.33229 -21.19586 -19.88851 -18.63967 -16.41302 -15.83709 -15.56594 -15.11696 -14.26033 -14.16609 -13.63511 -13.28238 -13.04160 -12.83105 -12.65718 -12.31648 -11.99400 -11.84944 -11.35906 -11.24566 -11.19916 -11.04074 -10.81408 -10.73032 -10.63863 -10.49556 -10.40914 -10.25419 -10.16299 -9.77659 -8.85835 -7.82787 -7.43969 -7.19369 -6.20884 -4.65138 3.11056 3.19159 3.21758 4.04029 4.29693 4.52283 4.77655 5.27182 5.34340 5.49119 5.63425 5.67628 5.72989 5.77582 5.83698 5.86948 6.06133 6.10691 6.14591 6.18090 6.24225 6.27408 6.32367 6.41933 6.47227 6.62957 6.70659 6.78791 6.91200 7.11268 7.43016 7.44319 7.58409 7.68720 8.17513 8.36288 9.01006 9.43055 10.55325 10.74545 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.007754 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.461104 B = 3610.362458 C = 4207.868292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.637 5.637 4 C 0.560 3.440 5 O -0.571 6.571 6 C -0.543 4.543 7 H 0.072 0.928 8 C 0.089 3.911 9 N -0.766 5.766 10 Si 0.903 3.097 11 H -0.273 1.273 12 H -0.280 1.280 13 H -0.265 1.265 14 C 0.156 3.844 15 H 0.074 0.926 16 C -0.161 4.161 17 C 0.051 3.949 18 N -0.529 5.529 19 C 0.046 3.954 20 C -0.143 4.143 21 C 0.031 3.969 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.267 0.733 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.492 -1.549 8.361 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.373 5.373 4 C 0.367 3.633 5 O -0.454 6.454 6 C -0.580 4.580 7 H 0.090 0.910 8 C -0.131 4.131 9 N -0.395 5.395 10 Si 0.728 3.272 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.189 1.189 14 C 0.050 3.950 15 H 0.092 0.908 16 C -0.200 4.200 17 C -0.078 4.078 18 N -0.254 5.254 19 C -0.082 4.082 20 C -0.201 4.201 21 C -0.098 4.098 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.403 -0.813 8.747 8.896 hybrid contribution -0.051 -0.374 -1.576 1.621 sum -1.454 -1.187 7.171 7.413 Atomic orbital electron populations 1.22196 0.97764 1.00360 1.02159 1.21174 0.93190 0.84498 1.01095 1.48002 1.71145 1.13186 1.04979 1.18143 0.77320 0.85794 0.82070 1.90521 1.50014 1.18616 1.86273 1.21037 1.49641 0.97879 0.89406 0.91021 1.25704 0.92811 0.94452 1.00118 1.70017 1.32371 1.10004 1.27116 0.86431 0.78862 0.80315 0.81617 1.19855 1.20529 1.18863 1.21670 0.93599 0.92674 0.87105 0.90785 1.23328 0.97463 0.96977 1.02221 1.22655 0.89151 0.97523 0.98451 1.63625 1.08965 1.03025 1.49780 1.22183 1.00726 0.88503 0.96836 1.21759 1.01005 0.98325 0.98991 1.23382 0.96498 0.93907 0.96028 0.93676 0.91744 0.93310 0.90278 0.93380 0.92225 0.87643 0.92543 0.93241 0.91822 0.94113 0.91548 0.92992 0.92849 0.92385 0.91907 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.29 5.87 -4.04 -0.02 2.27 16 3 N -0.64 -14.05 2.56 -165.18 -0.42 -14.47 16 4 C 0.56 15.15 6.89 -12.99 -0.09 15.06 16 5 O -0.57 -17.13 11.09 5.20 0.06 -17.07 16 6 C -0.54 -14.73 8.76 -35.63 -0.31 -15.05 16 7 H 0.07 1.80 5.95 -52.48 -0.31 1.49 16 8 C 0.09 2.41 5.49 -17.37 -0.10 2.32 16 9 N -0.77 -22.31 11.85 55.55 0.66 -21.66 16 10 Si 0.90 19.80 29.56 -169.99 -5.03 14.77 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 14 C 0.16 3.09 3.54 -65.65 -0.23 2.86 16 15 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 16 C -0.16 -3.19 6.29 -24.77 -0.16 -3.34 16 17 C 0.05 0.88 6.20 -2.84 -0.02 0.87 16 18 N -0.53 -9.54 5.16 -231.27 -1.19 -10.73 16 19 C 0.05 0.78 5.26 -3.82 -0.02 0.75 16 20 C -0.14 -1.92 9.94 37.16 0.37 -1.55 16 21 C 0.03 0.61 6.09 -2.30 -0.01 0.60 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.52 6.03 -51.93 -0.31 1.20 16 26 H 0.05 0.76 7.93 -51.93 -0.41 0.34 16 27 H 0.27 7.12 8.29 -40.82 -0.34 6.79 16 28 H 0.11 2.58 5.60 -51.93 -0.29 2.29 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.87 6.91 -51.93 -0.36 0.51 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 33 H 0.07 1.08 8.07 -51.93 -0.42 0.66 16 34 H 0.05 0.69 7.14 -51.93 -0.37 0.32 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.83 5.86 -51.93 -0.30 1.53 16 LS Contribution 298.87 15.07 4.50 4.50 Total: -1.00 -30.69 298.87 -7.75 -38.44 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.12 Total: 3.80 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.21 Total: 2.40 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.96 Total: -46.85 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.06 Total: -17.07 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.69 -7.75 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598040269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds