Wall clock time and date at job start Mon Mar 30 2020 03:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47187 * 2 1 4 4 C 1.34783 * 120.00343 * 270.00062 * 3 2 1 5 5 O 1.21683 * 120.00497 * 179.97438 * 4 3 2 6 6 C 1.46371 * 119.99552 * 359.97438 * 4 3 2 7 7 H 1.08007 * 120.00209 * 355.03875 * 6 4 3 8 8 C 1.40050 * 119.99910 * 175.04464 * 6 4 3 9 9 N 1.30666 * 119.99882 * 6.21650 * 8 6 4 10 10 Si 1.86800 * 119.99987 * 186.22256 * 8 6 4 11 11 H 1.48501 * 109.47393 * 94.97742 * 10 8 6 12 12 H 1.48497 * 109.47130 * 214.97757 * 10 8 6 13 13 H 1.48497 * 109.47235 * 334.97870 * 10 8 6 14 14 C 1.46500 * 120.00155 * 89.99644 * 3 2 1 15 15 H 1.09001 * 110.87502 * 3.84999 * 14 3 2 16 16 C 1.55400 * 111.05909 * 127.58481 * 14 3 2 17 17 C 1.54312 * 102.89954 * 153.65203 * 16 14 3 18 18 N 1.47435 * 107.37367 * 337.89696 * 17 16 14 19 19 C 1.46903 * 111.00309 * 236.66189 * 18 17 16 20 20 C 1.53000 * 109.46765 * 290.12279 * 19 18 17 21 21 C 1.47845 * 108.56622 * 358.92962 * 18 17 16 22 22 H 1.08996 * 109.47152 * 300.00433 * 1 2 3 23 23 H 1.09007 * 109.47034 * 60.00051 * 1 2 3 24 24 H 1.08994 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47049 * 240.00273 * 2 1 3 26 26 H 1.08994 * 109.47288 * 119.99899 * 2 1 3 27 27 H 0.97003 * 119.99770 * 180.02562 * 9 8 6 28 28 H 1.09006 * 110.67502 * 35.34968 * 16 14 3 29 29 H 1.08998 * 110.84564 * 272.04124 * 16 14 3 30 30 H 1.09000 * 109.89076 * 218.40483 * 17 16 14 31 31 H 1.09002 * 109.88841 * 97.38893 * 17 16 14 32 32 H 1.08999 * 109.47321 * 50.12338 * 19 18 17 33 33 H 1.08999 * 109.47257 * 170.12688 * 19 18 17 34 34 H 1.09005 * 109.47227 * 59.99937 * 20 19 18 35 35 H 1.09000 * 109.47081 * 179.97438 * 20 19 18 36 36 H 1.08991 * 109.47598 * 299.99969 * 20 19 18 37 37 H 1.08996 * 110.37674 * 142.92603 * 21 18 17 38 38 H 1.08998 * 110.37079 * 265.26288 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6482 3.1640 -1.1672 6 6 1.9995 1.3264 -2.4348 7 1 1.7172 0.2839 -2.4366 8 6 2.1329 2.0178 -3.6454 9 7 2.5911 3.2415 -3.6519 10 14 1.6554 1.1907 -5.2509 11 1 0.2604 1.5593 -5.6020 12 1 2.5722 1.6381 -6.3300 13 1 1.7541 -0.2830 -5.0969 14 6 2.2624 2.0718 1.2687 15 1 2.0983 1.4025 2.1132 16 6 3.6943 2.6742 1.3101 17 6 3.5431 3.8552 2.2917 18 7 2.1154 4.2220 2.3225 19 6 1.9273 5.6358 1.9705 20 6 2.4680 6.5181 3.0975 21 6 1.3829 3.3413 1.3877 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.6831 3.7205 -4.4904 28 1 3.9913 3.0291 0.3231 29 1 4.4106 1.9460 1.6905 30 1 4.1362 4.7022 1.9471 31 1 3.8702 3.5543 3.2870 32 1 2.4645 5.8551 1.0478 33 1 0.8654 5.8369 1.8293 34 1 3.5300 6.3169 3.2388 35 1 2.3289 7.5671 2.8362 36 1 1.9308 6.2988 4.0202 37 1 0.4036 3.0878 1.7937 38 1 1.2784 3.8231 0.4156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598040269.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:24 Heat of formation + Delta-G solvation = -52.499927 kcal Electronic energy + Delta-G solvation = -18409.652518 eV Core-core repulsion = 15672.154692 eV Total energy + Delta-G solvation = -2737.497826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78350 -38.65829 -36.10648 -34.66987 -33.75924 -30.82503 -30.08970 -29.19220 -27.49046 -24.00296 -23.91261 -22.85969 -21.37591 -20.47936 -18.22064 -17.72356 -17.16077 -16.73773 -15.89629 -15.77907 -15.20769 -14.81331 -14.62680 -14.46822 -14.26009 -14.03055 -13.34220 -13.33698 -13.02771 -12.93023 -12.76863 -12.57047 -12.41822 -12.21469 -12.16977 -12.11679 -12.01388 -11.92897 -11.69032 -11.40001 -10.89415 -9.55195 -9.32119 -8.99563 -8.24406 -6.77398 1.38125 1.38513 1.53537 2.22793 2.50090 2.68400 3.25495 3.60404 3.80708 3.90669 4.11159 4.22349 4.34454 4.37326 4.40089 4.54659 4.59535 4.67906 4.73362 4.74464 4.90730 4.94942 4.95373 5.01759 5.11927 5.16685 5.18403 5.32001 5.38192 5.45076 5.53711 5.85118 5.93078 6.10397 6.22533 6.52773 6.92763 7.50799 8.53864 8.73161 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026853 B = 0.007754 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.461104 B = 3610.362458 C = 4207.868292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 N -0.637 5.637 4 C 0.547 3.453 5 O -0.612 6.612 6 C -0.567 4.567 7 H 0.088 0.912 8 C 0.032 3.968 9 N -0.821 5.821 10 Si 0.986 3.014 11 H -0.267 1.267 12 H -0.276 1.276 13 H -0.247 1.247 14 C 0.153 3.847 15 H 0.111 0.889 16 C -0.159 4.159 17 C 0.055 3.945 18 N -0.519 5.519 19 C 0.044 3.956 20 C -0.132 4.132 21 C 0.037 3.963 22 H 0.051 0.949 23 H 0.032 0.968 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.270 0.730 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.098 0.902 32 H 0.005 0.995 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 -3.358 9.907 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.005 4.005 3 N -0.372 5.372 4 C 0.352 3.648 5 O -0.498 6.498 6 C -0.604 4.604 7 H 0.106 0.894 8 C -0.183 4.183 9 N -0.451 5.451 10 Si 0.806 3.194 11 H -0.192 1.192 12 H -0.201 1.201 13 H -0.171 1.171 14 C 0.047 3.953 15 H 0.129 0.871 16 C -0.198 4.198 17 C -0.073 4.073 18 N -0.243 5.243 19 C -0.085 4.085 20 C -0.189 4.189 21 C -0.092 4.092 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.075 -2.660 10.334 10.871 hybrid contribution 0.165 0.182 -1.978 1.993 sum -1.909 -2.478 8.356 8.923 Atomic orbital electron populations 1.22091 0.96250 1.02223 1.00945 1.21427 0.94404 0.82406 1.02290 1.47892 1.70298 1.14538 1.04519 1.18420 0.77040 0.85535 0.83775 1.90502 1.51510 1.20395 1.87391 1.21523 1.49842 0.98825 0.90178 0.89436 1.26855 0.92090 0.94907 1.04409 1.70191 1.34305 1.12195 1.28391 0.85172 0.78478 0.79762 0.75960 1.19179 1.20101 1.17050 1.21911 0.93323 0.93029 0.87036 0.87145 1.23200 0.98101 0.98386 1.00127 1.22716 0.88780 0.96377 0.99423 1.63784 1.09080 1.03208 1.48254 1.22262 1.00583 0.88718 0.96911 1.21681 1.01035 0.98377 0.97837 1.23231 0.97741 0.94231 0.93997 0.92954 0.94858 0.89856 0.91470 0.89735 0.92013 0.92953 0.90290 0.93978 0.88355 0.97683 0.91497 0.92711 0.91182 0.90990 0.90477 0.95814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 10.24 71.98 0.74 -4.12 16 2 C 0.12 4.09 5.87 86.38 0.51 4.60 16 3 N -0.64 -28.12 2.56 -794.73 -2.04 -30.15 16 4 C 0.55 30.69 6.89 86.36 0.60 31.28 16 5 O -0.61 -39.01 11.09 -4.30 -0.05 -39.06 16 6 C -0.57 -31.51 8.76 24.83 0.22 -31.29 16 7 H 0.09 4.41 5.95 -2.91 -0.02 4.39 16 8 C 0.03 1.79 5.49 85.31 0.47 2.26 16 9 N -0.82 -50.03 11.85 21.84 0.26 -49.78 16 10 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 12 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 13 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 14 C 0.15 5.90 3.54 46.47 0.16 6.07 16 15 H 0.11 3.50 7.86 -2.39 -0.02 3.49 16 16 C -0.16 -6.29 6.29 31.86 0.20 -6.09 16 17 C 0.06 1.87 6.20 86.65 0.54 2.41 16 18 N -0.52 -18.32 5.16 -885.59 -4.57 -22.89 16 19 C 0.04 1.49 5.26 86.30 0.45 1.94 16 20 C -0.13 -3.32 9.94 71.98 0.72 -2.61 16 21 C 0.04 1.51 6.09 86.77 0.53 2.03 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 2.49 6.03 -2.39 -0.01 2.47 16 26 H 0.08 2.34 7.93 -2.39 -0.02 2.32 16 27 H 0.27 15.09 8.29 -92.71 -0.77 14.32 16 28 H 0.05 2.68 5.60 -2.38 -0.01 2.67 16 29 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.04 1.48 6.91 -2.39 -0.02 1.47 16 31 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.00 0.20 7.96 -2.39 -0.02 0.18 16 33 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 34 H 0.05 1.35 7.14 -2.38 -0.02 1.33 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.02 1.21 5.86 -2.39 -0.01 1.20 16 Total: -1.00 -71.33 298.87 1.79 -69.55 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 1.03 Total: 22.66 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.12 Total: 6.48 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -6.34 Total: -102.81 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.05 Total: -39.06 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -71.33 1.79 -69.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598040269.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.047 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds