Wall clock time and date at job start Mon Mar 30 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.53939 * 113.73137 * 271.72481 * 18 17 16 20 20 N 1.47961 * 86.17837 * 221.92036 * 19 18 17 21 21 C 1.47958 * 90.76356 * 24.69092 * 20 19 18 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 27 27 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 28 28 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 29 29 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 30 30 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 31 31 H 1.09005 * 109.46782 * 299.99358 * 17 16 14 32 32 H 1.09000 * 109.47104 * 59.99474 * 17 16 14 33 33 H 1.09001 * 112.93889 * 43.43098 * 18 17 16 34 34 H 1.09003 * 113.75586 * 336.23450 * 19 18 17 35 35 H 1.08993 * 113.76325 * 107.60399 * 19 18 17 36 36 H 1.00904 * 111.00065 * 137.57991 * 20 19 18 37 37 H 1.09004 * 113.75716 * 220.98865 * 21 20 19 38 38 H 1.09004 * 113.86214 * 89.64250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 6 4.6551 -0.5052 5.3962 19 6 3.6911 -0.4265 6.5937 20 7 4.8953 -0.1915 7.4208 21 6 5.6231 0.3375 6.2462 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 2.4158 -2.7376 0.9718 27 1 1.6238 -2.2851 2.5003 28 1 0.6905 -2.3002 0.9847 29 1 2.4483 -1.0888 3.9070 30 1 3.9016 -1.6021 3.0167 31 1 4.9929 0.5593 3.5536 32 1 3.5391 1.0719 4.4437 33 1 5.0171 -1.5119 5.1875 34 1 3.0117 0.4250 6.5554 35 1 3.1848 -1.3666 6.8125 36 1 4.7304 0.5351 8.1013 37 1 6.6604 0.0077 6.1873 38 1 5.5100 1.4124 6.1048 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602594210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:07 Heat of formation + Delta-G solvation = -14.622335 kcal Electronic energy + Delta-G solvation = -17450.568482 eV Core-core repulsion = 14714.713152 eV Total energy + Delta-G solvation = -2735.855330 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.74528 -38.84009 -35.36453 -33.17457 -32.56593 -29.54458 -27.22172 -26.12080 -26.03308 -25.19491 -23.17629 -20.67460 -19.64946 -18.15225 -16.78777 -16.38432 -15.97497 -15.55341 -15.15226 -15.05752 -14.31997 -13.98063 -13.20763 -12.87204 -12.72510 -12.57870 -12.25676 -12.02096 -11.65631 -11.50995 -11.26510 -11.14791 -11.00275 -10.82120 -10.76224 -10.59472 -10.37206 -10.22751 -10.15246 -9.17377 -9.11405 -8.86104 -8.41216 -7.55228 -6.06276 -4.14174 3.27456 3.33706 3.35239 3.45488 3.94232 3.98638 4.36651 4.42233 4.66761 5.11345 5.19008 5.22267 5.24778 5.35375 5.42673 5.60099 5.62148 5.66348 5.70154 5.87362 5.92721 6.00818 6.09854 6.27951 6.31944 6.42694 6.77157 6.83343 7.02523 7.07366 7.46356 7.54527 7.73323 8.03192 8.21682 8.57502 8.85377 9.10601 9.52538 10.99015 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.004666 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.856070 B = 5999.197082 C = 6088.721181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.595 5.595 13 C 0.087 3.913 14 C 0.500 3.500 15 O -0.557 6.557 16 C -0.137 4.137 17 C -0.096 4.096 18 C -0.114 4.114 19 C 0.006 3.994 20 N -0.640 5.640 21 C 0.006 3.994 22 H 0.030 0.970 23 H 0.010 0.990 24 H 0.093 0.907 25 H 0.263 0.737 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.315 0.685 37 H 0.086 0.914 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -4.487 14.453 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.177 4.177 17 C -0.134 4.134 18 C -0.132 4.132 19 C -0.125 4.125 20 N -0.264 5.264 21 C -0.124 4.124 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.848 -4.541 14.375 15.559 hybrid contribution -0.171 0.283 -1.132 1.179 sum 3.677 -4.258 13.243 14.389 Atomic orbital electron populations 1.22091 0.98333 0.99302 1.00795 1.18924 0.90813 0.94545 0.80142 0.91959 1.21329 1.31701 1.12937 0.90347 0.92340 1.24903 0.94960 0.95008 0.98973 1.69883 1.36403 1.22699 1.23705 0.86495 0.78649 0.79862 0.82373 1.20619 1.19931 1.21129 1.48254 1.49105 1.11636 1.23664 1.21543 1.01515 0.83286 0.99323 1.20490 0.79072 0.87164 0.84528 1.90635 1.58506 1.17338 1.77153 1.21668 1.00701 0.99721 0.95594 1.21352 0.99908 0.97559 0.94586 1.23065 0.95968 1.00396 0.93807 1.23825 0.93519 1.02022 0.93101 1.66892 1.11493 1.39398 1.08661 1.23760 0.99533 0.98331 0.90789 0.95134 0.97044 0.88834 0.92719 0.93388 0.92914 0.90996 0.89720 0.89546 0.90783 0.91297 0.88369 0.91408 0.89615 0.87239 0.89609 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.20 16 2 C 0.26 6.62 2.64 -69.09 -0.18 6.43 16 3 H 0.06 1.87 6.90 -51.92 -0.36 1.51 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.60 -12.73 2.75 -175.27 -0.48 -13.21 16 13 C 0.09 1.46 9.48 59.85 0.57 2.02 16 14 C 0.50 10.24 7.67 -10.98 -0.08 10.15 16 15 O -0.56 -13.70 15.31 5.56 0.09 -13.61 16 16 C -0.14 -1.94 4.24 -27.88 -0.12 -2.06 16 17 C -0.10 -1.25 4.36 -26.73 -0.12 -1.37 16 18 C -0.11 -1.19 3.84 -89.68 -0.34 -1.54 16 19 C 0.01 0.05 8.46 -2.76 -0.02 0.03 16 20 N -0.64 -6.39 8.53 -117.02 -1.00 -7.38 16 21 C 0.01 0.06 8.47 -2.77 -0.02 0.04 16 22 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 28 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 29 H 0.08 1.03 7.40 -51.93 -0.38 0.64 16 30 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 31 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 33 H 0.10 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.32 2.66 8.91 -39.29 -0.35 2.31 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -31.31 305.99 -7.70 -39.01 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.15 Total: 1.60 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.37 Total: -2.44 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.85 Total: -45.30 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.31 -7.70 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.384 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds