Wall clock time and date at job start Mon Mar 30 2020 03:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.53939 * 113.73137 * 271.72481 * 18 17 16 20 20 N 1.47961 * 86.17837 * 221.92036 * 19 18 17 21 21 C 1.47958 * 90.76356 * 24.69092 * 20 19 18 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 27 27 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 28 28 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 29 29 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 30 30 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 31 31 H 1.09005 * 109.46782 * 299.99358 * 17 16 14 32 32 H 1.09000 * 109.47104 * 59.99474 * 17 16 14 33 33 H 1.09001 * 112.93889 * 43.43098 * 18 17 16 34 34 H 1.09003 * 113.75586 * 336.23450 * 19 18 17 35 35 H 1.08993 * 113.76325 * 107.60399 * 19 18 17 36 36 H 1.00904 * 111.00065 * 137.57991 * 20 19 18 37 37 H 1.09004 * 113.75716 * 220.98865 * 21 20 19 38 38 H 1.09004 * 113.86214 * 89.64250 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 6 4.6551 -0.5052 5.3962 19 6 3.6911 -0.4265 6.5937 20 7 4.8953 -0.1915 7.4208 21 6 5.6231 0.3375 6.2462 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 2.4158 -2.7376 0.9718 27 1 1.6238 -2.2851 2.5003 28 1 0.6905 -2.3002 0.9847 29 1 2.4483 -1.0888 3.9070 30 1 3.9016 -1.6021 3.0167 31 1 4.9929 0.5593 3.5536 32 1 3.5391 1.0719 4.4437 33 1 5.0171 -1.5119 5.1875 34 1 3.0117 0.4250 6.5554 35 1 3.1848 -1.3666 6.8125 36 1 4.7304 0.5351 8.1013 37 1 6.6604 0.0077 6.1873 38 1 5.5100 1.4124 6.1048 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:06 Heat of formation + Delta-G solvation = -37.138267 kcal Electronic energy + Delta-G solvation = -17451.544846 eV Core-core repulsion = 14714.713152 eV Total energy + Delta-G solvation = -2736.831694 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90870 -40.11569 -37.16015 -34.87127 -34.00651 -31.37928 -28.31002 -27.53878 -27.25881 -26.85167 -24.40144 -22.37179 -20.47577 -19.74880 -18.51736 -17.93729 -17.18711 -16.88078 -16.64573 -16.23421 -16.01690 -15.18588 -14.61558 -14.37761 -14.22609 -13.70874 -13.52050 -13.45449 -13.21364 -12.94573 -12.83468 -12.67877 -12.65018 -12.30489 -12.17089 -12.12105 -12.08059 -11.57077 -11.27380 -11.17475 -10.62956 -10.44135 -9.86267 -9.29223 -8.14739 -6.31632 1.40932 1.42208 1.52264 1.87275 2.34455 2.53581 3.12914 3.20229 3.52737 3.71192 3.91403 4.26391 4.35511 4.46059 4.48499 4.50488 4.65701 4.71755 4.77389 4.84555 4.85626 4.88324 4.91388 5.04123 5.07698 5.09543 5.15965 5.26565 5.44855 5.47167 5.64221 5.68987 6.05019 6.16936 6.32787 6.76990 6.89238 7.33784 7.53173 8.89492 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.004666 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.856070 B = 5999.197082 C = 6088.721181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.282 1.282 10 H -0.261 1.261 11 H -0.280 1.280 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.487 3.513 15 O -0.611 6.611 16 C -0.121 4.121 17 C -0.089 4.089 18 C -0.107 4.107 19 C 0.008 3.992 20 N -0.648 5.648 21 C 0.005 3.995 22 H 0.048 0.952 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.324 0.676 37 H 0.090 0.910 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -6.905 15.628 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.185 1.185 11 H -0.205 1.205 12 N -0.335 5.335 13 C -0.059 4.059 14 C 0.277 3.723 15 O -0.494 6.494 16 C -0.161 4.161 17 C -0.127 4.127 18 C -0.126 4.126 19 C -0.122 4.122 20 N -0.273 5.273 21 C -0.125 4.125 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.123 -7.001 15.581 17.572 hybrid contribution -0.249 1.084 -1.462 1.838 sum 3.874 -5.916 14.118 15.790 Atomic orbital electron populations 1.21871 0.97218 1.00120 0.99872 1.18517 0.91638 0.92174 0.82101 0.97623 1.21595 1.31815 1.13018 0.91235 0.92181 1.25764 0.95077 0.95675 1.02100 1.70030 1.37352 1.24004 1.24394 0.85449 0.77766 0.79244 0.78519 1.20856 1.18479 1.20532 1.48295 1.49244 1.13490 1.22447 1.21817 1.01335 0.80287 1.02492 1.21671 0.78007 0.86800 0.85800 1.90607 1.60240 1.20014 1.78529 1.21682 1.02064 0.99681 0.92638 1.21262 0.98789 0.97294 0.95384 1.23003 0.96540 1.00493 0.92558 1.23848 0.93375 1.02664 0.92283 1.66884 1.11658 1.39888 1.08864 1.23781 0.99738 0.98350 0.90669 0.93263 0.96147 0.91533 0.92670 0.92750 0.88277 0.91409 0.86501 0.87139 0.92868 0.92737 0.87417 0.91260 0.88524 0.86285 0.89158 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.95 71.98 0.64 -5.81 16 2 C 0.26 13.65 2.64 44.24 0.12 13.77 16 3 H 0.01 0.37 6.90 -2.38 -0.02 0.35 16 4 C -0.54 -29.64 8.37 25.60 0.21 -29.42 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.36 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 N -0.60 -25.48 2.75 -826.81 -2.28 -27.75 16 13 C 0.08 2.52 9.48 127.77 1.21 3.73 16 14 C 0.49 19.81 7.67 87.66 0.67 20.49 16 15 O -0.61 -31.24 15.31 -3.03 -0.05 -31.28 16 16 C -0.12 -3.12 4.24 29.85 0.13 -2.99 16 17 C -0.09 -2.21 4.36 30.60 0.13 -2.08 16 18 C -0.11 -1.98 3.84 -10.15 -0.04 -2.02 16 19 C 0.01 0.14 8.46 86.41 0.73 0.87 16 20 N -0.65 -11.39 8.53 -524.15 -4.47 -15.86 16 21 C 0.00 0.09 8.47 86.41 0.73 0.82 16 22 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.10 2.08 6.44 -2.38 -0.02 2.07 16 28 H 0.07 2.12 6.43 -2.39 -0.02 2.11 16 29 H 0.12 2.31 7.40 -2.38 -0.02 2.29 16 30 H 0.11 2.39 8.11 -2.39 -0.02 2.37 16 31 H 0.05 1.54 8.10 -2.38 -0.02 1.52 16 32 H 0.05 1.51 7.79 -2.39 -0.02 1.49 16 33 H 0.11 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.07 1.14 7.89 -2.39 -0.02 1.12 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.32 4.80 8.91 -89.69 -0.80 4.01 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 1.21 8.10 -2.38 -0.02 1.19 16 Total: -1.00 -70.54 305.99 0.71 -69.83 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.24 Total: 14.57 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.99 Total: -1.47 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.50 Total: -97.01 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.05 Total: -31.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -70.54 0.71 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.694 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds