Wall clock time and date at job start Mon Mar 30 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 C 1.34771 * 120.00141 * 119.99854 * 12 2 1 15 15 O 1.21281 * 120.00208 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00070 * 180.02562 * 14 12 2 17 17 C 1.53005 * 109.47114 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.47049 * 179.97438 * 17 16 14 19 19 C 1.53935 * 113.73546 * 271.72747 * 18 17 16 20 20 N 1.47955 * 86.17928 * 221.92267 * 19 18 17 21 21 C 1.47962 * 90.76725 * 24.69146 * 20 19 18 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 27 27 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 28 28 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 29 29 H 1.08999 * 109.47401 * 300.00043 * 16 14 12 30 30 H 1.09002 * 109.47014 * 60.00321 * 16 14 12 31 31 H 1.08998 * 109.47107 * 299.99720 * 17 16 14 32 32 H 1.08995 * 109.46781 * 59.99935 * 17 16 14 33 33 H 1.09002 * 112.93820 * 43.43729 * 18 17 16 34 34 H 1.08998 * 113.75402 * 336.23875 * 19 18 17 35 35 H 1.08998 * 113.75634 * 107.59994 * 19 18 17 36 36 H 1.00901 * 111.00302 * 137.58017 * 20 19 18 37 37 H 1.09003 * 113.76146 * 220.99722 * 21 20 19 38 38 H 1.08994 * 113.86028 * 89.63950 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2950 -0.7459 -3.3141 17 6 4.1456 0.2156 -4.1466 18 6 4.6556 -0.5057 -5.3958 19 6 5.9918 -1.2404 -5.1850 20 7 6.3764 -0.7157 -6.5139 21 6 5.4242 0.4074 -6.3680 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7091 1.1614 3.4844 26 1 0.7375 -2.1444 -1.9994 27 1 2.4628 -2.5819 -1.9865 28 1 1.5295 -2.5969 -0.4708 29 1 3.9003 -1.6025 -3.0179 30 1 2.4469 -1.0880 -3.9073 31 1 3.5406 1.0724 -4.4429 32 1 4.9935 0.5573 -3.5532 33 1 3.8899 -1.1138 -5.8777 34 1 6.5884 -0.8401 -4.3654 35 1 5.8958 -2.3257 -5.1523 36 1 7.3294 -0.3844 -6.5099 37 1 4.8747 0.6387 -7.2806 38 1 5.8532 1.2905 -5.8948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:09 Heat of formation + Delta-G solvation = -37.857052 kcal Electronic energy + Delta-G solvation = -17460.710700 eV Core-core repulsion = 14723.847837 eV Total energy + Delta-G solvation = -2736.862863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90677 -40.11616 -37.15293 -34.86871 -34.00627 -31.38304 -28.31672 -27.47138 -27.29646 -26.85609 -24.40360 -22.38503 -20.48040 -19.74934 -18.51542 -17.94658 -17.19160 -16.88259 -16.60211 -16.30382 -15.96753 -15.11694 -14.74825 -14.23247 -14.19671 -13.66443 -13.59270 -13.48304 -13.19886 -12.95339 -12.77927 -12.72439 -12.65083 -12.32406 -12.20453 -12.10158 -12.09488 -11.56692 -11.27531 -11.17339 -10.63328 -10.43952 -9.86960 -9.28904 -8.14925 -6.31669 1.40408 1.42028 1.53412 1.87551 2.34325 2.53785 3.12965 3.19936 3.52445 3.71553 3.90962 4.27717 4.35526 4.46522 4.48854 4.50713 4.65396 4.75270 4.79657 4.80519 4.85493 4.89829 4.90982 5.04117 5.06983 5.11068 5.15780 5.25954 5.45231 5.48344 5.62130 5.68533 6.05303 6.17155 6.31756 6.77286 6.89336 7.33711 7.53329 8.89668 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038789 B = 0.004833 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.678748 B = 5792.662993 C = 5984.415121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.604 5.604 13 C 0.080 3.920 14 C 0.487 3.513 15 O -0.611 6.611 16 C -0.121 4.121 17 C -0.089 4.089 18 C -0.106 4.106 19 C 0.006 3.994 20 N -0.648 5.648 21 C 0.005 3.995 22 H 0.066 0.934 23 H 0.018 0.982 24 H 0.046 0.954 25 H 0.264 0.736 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.324 0.676 37 H 0.092 0.908 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -7.593 -14.458 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.335 5.335 13 C -0.063 4.063 14 C 0.277 3.723 15 O -0.494 6.494 16 C -0.161 4.161 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.124 4.124 20 N -0.273 5.273 21 C -0.125 4.125 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.389 -7.457 -14.814 17.438 hybrid contribution 0.496 0.820 1.931 2.155 sum 5.885 -6.637 -12.883 15.641 Atomic orbital electron populations 1.21855 0.97264 1.00045 0.99778 1.18520 0.91591 0.92209 0.82119 0.97633 1.21627 1.31769 1.13022 0.91164 0.91988 1.25770 0.95098 0.95653 1.02129 1.70035 1.37449 1.23975 1.24339 0.85387 0.78215 0.78484 0.78800 1.18753 1.21222 1.19971 1.48297 1.49205 1.13496 1.22454 1.21856 1.01397 0.80484 1.02518 1.21669 0.78043 0.86845 0.85733 1.90608 1.60325 1.19998 1.78484 1.21681 1.01988 0.99694 0.92697 1.21262 0.98931 0.97505 0.95042 1.23005 0.97247 0.97424 0.94800 1.23847 0.95544 1.01793 0.91189 1.66883 1.08619 1.22389 1.29366 1.23784 0.95095 0.93825 0.99780 0.91570 0.96275 0.93448 0.92681 0.91680 0.88798 0.91598 0.87051 0.86605 0.92469 0.93134 0.87171 0.91527 0.88603 0.86325 0.88942 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.97 71.98 0.65 -5.77 16 2 C 0.26 13.65 2.64 44.25 0.12 13.76 16 3 H 0.01 0.36 6.90 -2.39 -0.02 0.35 16 4 C -0.54 -29.43 7.99 25.60 0.20 -29.23 16 5 H 0.06 3.28 7.33 -2.91 -0.02 3.26 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.33 16 8 Si 0.97 43.16 29.54 68.60 2.03 45.18 16 9 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.60 -25.46 2.75 -826.78 -2.28 -27.73 16 13 C 0.08 2.42 9.24 127.77 1.18 3.60 16 14 C 0.49 19.82 7.67 87.66 0.67 20.49 16 15 O -0.61 -31.26 15.31 -3.03 -0.05 -31.30 16 16 C -0.12 -3.12 4.24 29.85 0.13 -2.99 16 17 C -0.09 -2.22 4.36 30.60 0.13 -2.08 16 18 C -0.11 -1.96 3.84 -10.15 -0.04 -2.00 16 19 C 0.01 0.11 8.46 86.41 0.73 0.84 16 20 N -0.65 -11.60 8.53 -524.21 -4.47 -16.08 16 21 C 0.01 0.09 8.47 86.41 0.73 0.83 16 22 H 0.07 3.61 6.07 -2.39 -0.01 3.59 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 2.09 7.67 -2.39 -0.02 2.08 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 28 H 0.07 2.20 7.02 -2.39 -0.02 2.18 16 29 H 0.11 2.36 7.40 -2.39 -0.02 2.34 16 30 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 31 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.05 1.45 7.79 -2.39 -0.02 1.43 16 33 H 0.11 1.82 8.13 -2.39 -0.02 1.80 16 34 H 0.07 1.19 7.89 -2.39 -0.02 1.17 16 35 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.32 4.96 8.91 -89.69 -0.80 4.16 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -70.31 306.68 0.67 -69.64 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.24 Total: 15.02 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.95 Total: -1.40 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -6.50 Total: -97.14 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.30 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -70.31 0.67 -69.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.786 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds