Wall clock time and date at job start Mon Mar 30 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46927 * 90.00469 * 8 6 4 10 10 H 1.48504 * 109.47102 * 210.00293 * 8 6 4 11 11 H 1.48497 * 109.47275 * 330.00418 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.52999 * 109.47004 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47294 * 64.99627 * 16 15 13 18 18 N 1.46894 * 109.47147 * 305.00048 * 16 15 13 19 19 C 1.52996 * 109.47521 * 184.99803 * 16 15 13 20 20 C 1.53008 * 117.50180 * 253.62626 * 19 16 15 21 21 C 1.52998 * 117.50419 * 185.00228 * 19 16 15 22 22 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 27 27 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 28 28 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 29 29 H 1.09008 * 109.46770 * 60.00183 * 17 16 15 30 30 H 1.08994 * 109.47528 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47039 * 300.00626 * 17 16 15 32 32 H 1.00906 * 111.00180 * 176.04863 * 18 16 15 33 33 H 1.00897 * 110.99906 * 299.99851 * 18 16 15 34 34 H 1.08995 * 115.54864 * 39.32505 * 19 16 15 35 35 H 1.09002 * 117.49198 * 359.97438 * 20 19 16 36 36 H 1.08994 * 117.50391 * 145.01525 * 20 19 16 37 37 H 1.09000 * 117.50309 * 214.97885 * 21 19 16 38 38 H 1.09005 * 117.49747 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6303 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8639 1.1598 -2.4102 15 6 2.6607 -0.7259 -3.5845 16 6 2.7169 0.2584 -4.7545 17 6 3.7517 1.3455 -4.4573 18 7 1.3969 0.8762 -4.9386 19 6 3.1131 -0.4877 -6.0301 20 6 4.5318 -0.2740 -6.5619 21 6 3.3391 0.3444 -7.2940 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1610 3.4844 26 1 2.2491 -1.6318 -1.1525 27 1 3.6591 -1.1180 -3.3909 28 1 1.9895 -1.5478 -3.8336 29 1 4.7312 0.8871 -4.3207 30 1 3.7921 2.0464 -5.2909 31 1 3.4695 1.8770 -3.5485 32 1 1.4238 1.5774 -5.6636 33 1 0.6955 0.1783 -5.1363 34 1 2.6738 -1.4778 -6.1513 35 1 5.1826 0.3985 -6.0031 36 1 5.0261 -1.1236 -7.0329 37 1 3.0487 -0.0984 -8.2468 38 1 3.2051 1.4234 -7.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687118194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:44 Heat of formation + Delta-G solvation = -17.146346 kcal Electronic energy + Delta-G solvation = -17726.618766 eV Core-core repulsion = 14990.653987 eV Total energy + Delta-G solvation = -2735.964779 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60811 -37.92870 -34.75912 -33.62490 -32.22259 -29.86843 -28.68339 -27.16917 -25.15516 -23.61944 -22.46179 -20.94567 -19.15720 -18.64492 -16.98445 -16.41205 -15.59907 -15.24236 -15.03767 -14.74605 -14.36626 -13.93624 -13.32997 -12.71161 -12.33977 -12.27075 -12.11383 -11.71010 -11.58335 -11.34652 -11.10425 -10.98527 -10.92368 -10.79809 -10.54046 -10.41300 -10.23903 -10.17139 -10.13801 -8.93916 -8.70214 -8.46094 -8.15854 -7.65873 -6.04681 -4.13387 3.28491 3.34905 3.36900 3.62813 3.72795 4.21132 4.42241 4.63926 4.74919 4.81378 4.96819 5.04911 5.26911 5.29028 5.44096 5.46652 5.71038 5.81951 5.88815 5.91536 5.97887 6.04028 6.14810 6.22016 6.73682 6.95087 7.11485 7.28870 7.47360 7.63220 7.72268 7.73644 7.82826 8.05087 8.26601 8.85129 8.94443 9.40364 9.57350 11.01153 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050009 B = 0.004929 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.769365 B = 5679.417669 C = 5904.276931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.721 5.721 13 C 0.502 3.498 14 O -0.520 6.520 15 C -0.130 4.130 16 C 0.169 3.831 17 C -0.149 4.149 18 N -0.810 5.810 19 C -0.186 4.186 20 C -0.178 4.178 21 C -0.180 4.180 22 H 0.087 0.913 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.263 0.737 26 H 0.384 0.616 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.333 0.667 33 H 0.332 0.668 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -3.995 -16.118 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.370 5.370 13 C 0.286 3.714 14 O -0.396 6.396 15 C -0.171 4.171 16 C 0.076 3.924 17 C -0.206 4.206 18 N -0.337 5.337 19 C -0.207 4.207 20 C -0.216 4.216 21 C -0.217 4.217 22 H 0.105 0.895 23 H 0.035 0.965 24 H 0.042 0.958 25 H 0.073 0.927 26 H 0.215 0.785 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.231 -2.737 -15.210 16.023 hybrid contribution 0.455 -1.556 -0.196 1.633 sum 4.686 -4.293 -15.406 16.665 Atomic orbital electron populations 1.22050 0.98743 0.98803 1.00774 1.18627 0.90837 0.93844 0.80192 0.93617 1.21264 1.32131 1.13067 0.90530 0.92269 1.24889 0.94897 0.94994 0.98990 1.69914 1.35985 1.22575 1.23693 0.86483 0.78576 0.79840 0.82376 1.20629 1.21134 1.19920 1.46533 1.66354 1.13272 1.10831 1.20147 0.79224 0.87878 0.84149 1.90646 1.49204 1.15536 1.84225 1.21741 1.02436 0.98535 0.94380 1.19929 0.90235 0.92471 0.89784 1.22078 0.96843 0.98081 1.03646 1.58852 1.04841 1.17373 1.52643 1.23411 1.00387 1.00761 0.96096 1.23085 0.91237 1.03358 1.03876 1.22893 1.03617 0.99608 0.95597 0.89463 0.96534 0.95812 0.92701 0.78500 0.89514 0.90206 0.92800 0.93490 0.89117 0.85398 0.85610 0.88216 0.87903 0.89291 0.89228 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.97 2.56 -69.08 -0.18 6.79 16 3 H 0.05 1.38 7.57 -51.93 -0.39 0.99 16 4 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 N -0.72 -15.34 5.07 -54.93 -0.28 -15.61 16 13 C 0.50 9.99 7.33 -10.99 -0.08 9.91 16 14 O -0.52 -12.21 12.68 5.55 0.07 -12.14 16 15 C -0.13 -1.87 4.90 -27.88 -0.14 -2.01 16 16 C 0.17 2.21 0.66 -131.60 -0.09 2.12 16 17 C -0.15 -2.09 7.13 37.16 0.27 -1.83 16 18 N -0.81 -11.24 7.31 0.74 0.01 -11.23 16 19 C -0.19 -1.92 5.28 -90.62 -0.48 -2.40 16 20 C -0.18 -1.67 9.65 -26.73 -0.26 -1.93 16 21 C -0.18 -1.64 9.56 -26.73 -0.26 -1.90 16 22 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.38 7.15 8.54 -40.82 -0.35 6.80 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.68 6.74 -51.92 -0.35 0.33 16 30 H 0.05 0.58 6.96 -51.93 -0.36 0.22 16 31 H 0.09 1.63 5.95 -51.93 -0.31 1.32 16 32 H 0.33 4.09 8.58 -39.29 -0.34 3.76 16 33 H 0.33 4.20 9.00 -39.29 -0.35 3.84 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.00 5.89 -51.93 -0.31 0.69 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.87 7.19 -51.93 -0.37 0.50 16 LS Contribution 303.13 15.07 4.57 4.57 Total: -1.00 -30.73 303.13 -7.23 -37.96 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.95 Total: 12.94 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.26 Total: -7.63 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.35 Total: -51.65 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.73 -7.23 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687118194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.815 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds