Wall clock time and date at job start Mon Mar 30 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46927 * 90.00469 * 8 6 4 10 10 H 1.48504 * 109.47102 * 210.00293 * 8 6 4 11 11 H 1.48497 * 109.47275 * 330.00418 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.52999 * 109.47004 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.47294 * 64.99627 * 16 15 13 18 18 N 1.46894 * 109.47147 * 305.00048 * 16 15 13 19 19 C 1.52996 * 109.47521 * 184.99803 * 16 15 13 20 20 C 1.53008 * 117.50180 * 253.62626 * 19 16 15 21 21 C 1.52998 * 117.50419 * 185.00228 * 19 16 15 22 22 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 23 23 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 27 27 H 1.09003 * 109.47112 * 299.99065 * 15 13 12 28 28 H 1.08993 * 109.47916 * 59.99687 * 15 13 12 29 29 H 1.09008 * 109.46770 * 60.00183 * 17 16 15 30 30 H 1.08994 * 109.47528 * 179.97438 * 17 16 15 31 31 H 1.09002 * 109.47039 * 300.00626 * 17 16 15 32 32 H 1.00906 * 111.00180 * 176.04863 * 18 16 15 33 33 H 1.00897 * 110.99906 * 299.99851 * 18 16 15 34 34 H 1.08995 * 115.54864 * 39.32505 * 19 16 15 35 35 H 1.09002 * 117.49198 * 359.97438 * 20 19 16 36 36 H 1.08994 * 117.50391 * 145.01525 * 20 19 16 37 37 H 1.09000 * 117.50309 * 214.97885 * 21 19 16 38 38 H 1.09005 * 117.49747 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6303 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1124 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8639 1.1598 -2.4102 15 6 2.6607 -0.7259 -3.5845 16 6 2.7169 0.2584 -4.7545 17 6 3.7517 1.3455 -4.4573 18 7 1.3969 0.8762 -4.9386 19 6 3.1131 -0.4877 -6.0301 20 6 4.5318 -0.2740 -6.5619 21 6 3.3391 0.3444 -7.2940 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7081 1.1610 3.4844 26 1 2.2491 -1.6318 -1.1525 27 1 3.6591 -1.1180 -3.3909 28 1 1.9895 -1.5478 -3.8336 29 1 4.7312 0.8871 -4.3207 30 1 3.7921 2.0464 -5.2909 31 1 3.4695 1.8770 -3.5485 32 1 1.4238 1.5774 -5.6636 33 1 0.6955 0.1783 -5.1363 34 1 2.6738 -1.4778 -6.1513 35 1 5.1826 0.3985 -6.0031 36 1 5.0261 -1.1236 -7.0329 37 1 3.0487 -0.0984 -8.2468 38 1 3.2051 1.4234 -7.2169 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687118194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:44 Heat of formation + Delta-G solvation = -39.207527 kcal Electronic energy + Delta-G solvation = -17727.575411 eV Core-core repulsion = 14990.653987 eV Total energy + Delta-G solvation = -2736.921424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87116 -39.24129 -36.58166 -34.73044 -34.17932 -31.43545 -30.13244 -28.49433 -27.28910 -24.70416 -23.16467 -22.73982 -20.89699 -19.67574 -18.73670 -17.60512 -17.14533 -16.74749 -16.46142 -16.11036 -15.70701 -15.27153 -14.75771 -14.42883 -14.14850 -13.59826 -13.41418 -13.07649 -12.96354 -12.86015 -12.71247 -12.62820 -12.31546 -12.19120 -12.10521 -11.97026 -11.84267 -11.20422 -11.08901 -11.03687 -10.58660 -10.25611 -9.50668 -9.22778 -8.14033 -6.31505 1.45509 1.46259 1.57032 2.16048 2.39706 2.75215 2.96402 3.15890 3.66823 3.76880 3.91595 4.12641 4.15194 4.26758 4.47543 4.50804 4.70558 4.79519 4.83051 4.90557 4.98678 4.99859 5.04011 5.11492 5.17695 5.27272 5.31127 5.49232 5.55771 5.70902 5.80250 6.02221 6.18381 6.49569 6.77049 6.78738 7.21738 7.37595 7.85955 8.92100 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050009 B = 0.004929 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.769365 B = 5679.417669 C = 5904.276931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.260 1.260 12 N -0.720 5.720 13 C 0.496 3.504 14 O -0.560 6.560 15 C -0.120 4.120 16 C 0.171 3.829 17 C -0.145 4.145 18 N -0.832 5.832 19 C -0.186 4.186 20 C -0.176 4.176 21 C -0.174 4.174 22 H 0.062 0.938 23 H 0.011 0.989 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.399 0.601 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.340 0.660 33 H 0.338 0.662 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -6.247 -17.266 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.370 5.370 13 C 0.283 3.717 14 O -0.438 6.438 15 C -0.160 4.160 16 C 0.078 3.922 17 C -0.203 4.203 18 N -0.361 5.361 19 C -0.207 4.207 20 C -0.213 4.213 21 C -0.211 4.211 22 H 0.081 0.919 23 H 0.030 0.970 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.233 0.767 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.278 -5.023 -16.394 17.940 hybrid contribution 0.135 -0.776 0.120 0.797 sum 5.413 -5.798 -16.274 18.104 Atomic orbital electron populations 1.21854 0.98714 0.99033 0.99250 1.18197 0.90798 0.91680 0.82320 0.98880 1.21593 1.32313 1.13430 0.91029 0.91057 1.25822 0.94929 0.95625 1.02369 1.70071 1.37130 1.24105 1.24455 0.85349 0.77749 0.79200 0.78048 1.20366 1.20984 1.18353 1.46338 1.66672 1.13944 1.10087 1.21141 0.78005 0.87572 0.85017 1.90641 1.50630 1.17602 1.84948 1.21759 1.03741 0.98897 0.91610 1.19868 0.89606 0.92030 0.90736 1.22010 0.97855 0.98550 1.01845 1.58822 1.05652 1.18188 1.53427 1.23173 1.01438 1.01096 0.94960 1.23154 0.90827 1.03755 1.03567 1.22950 1.03111 0.99352 0.95654 0.91929 0.97030 0.94469 0.92675 0.76683 0.87396 0.87657 0.91495 0.92360 0.93620 0.84661 0.84926 0.86976 0.88426 0.87766 0.87754 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.66 2.56 44.25 0.11 14.77 16 3 H -0.01 -0.43 7.57 -2.39 -0.02 -0.44 16 4 C -0.55 -29.60 8.73 25.60 0.22 -29.38 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.81 16 8 Si 0.97 42.72 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.72 -30.52 5.07 -446.09 -2.26 -32.78 16 13 C 0.50 19.70 7.33 87.66 0.64 20.35 16 14 O -0.56 -27.16 12.68 -3.04 -0.04 -27.20 16 15 C -0.12 -3.19 4.90 29.85 0.15 -3.05 16 16 C 0.17 4.19 0.66 3.53 0.00 4.19 16 17 C -0.15 -3.99 7.13 71.98 0.51 -3.48 16 18 N -0.83 -22.47 7.31 -151.57 -1.11 -23.58 16 19 C -0.19 -3.28 5.28 -10.79 -0.06 -3.34 16 20 C -0.18 -2.75 9.65 30.60 0.30 -2.45 16 21 C -0.17 -2.67 9.56 30.59 0.29 -2.38 16 22 H 0.06 3.60 6.07 -2.39 -0.01 3.59 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.40 14.32 8.54 -92.71 -0.79 13.53 16 27 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.07 1.61 6.74 -2.38 -0.02 1.59 16 30 H 0.06 1.42 6.96 -2.39 -0.02 1.40 16 31 H 0.04 1.69 5.95 -2.39 -0.01 1.67 16 32 H 0.34 8.14 8.58 -89.69 -0.77 7.37 16 33 H 0.34 8.13 9.00 -89.70 -0.81 7.33 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 1.64 5.89 -2.39 -0.01 1.63 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.47 7.19 -2.38 -0.02 1.45 16 Total: -1.00 -68.24 303.13 0.86 -67.38 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -1.29 Total: 35.07 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 3.29 Total: -9.81 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -3.13 Total: -110.18 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -68.24 0.86 -67.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687118194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.173 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds