Wall clock time and date at job start Mon Mar 30 2020 03:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47202 * 299.99537 * 16 15 13 18 18 N 1.46900 * 109.47382 * 60.00093 * 16 15 13 19 19 C 1.53003 * 109.46639 * 179.97438 * 16 15 13 20 20 C 1.53002 * 117.49596 * 248.74403 * 19 16 15 21 21 C 1.53002 * 117.49528 * 180.08887 * 19 16 15 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 28 28 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 29 29 H 1.08995 * 109.47004 * 60.00358 * 17 16 15 30 30 H 1.08999 * 109.47060 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.46961 * 300.00492 * 17 16 15 32 32 H 1.00894 * 111.00200 * 59.99364 * 18 16 15 33 33 H 1.00904 * 110.99896 * 183.95272 * 18 16 15 34 34 H 1.08991 * 115.55318 * 34.41083 * 19 16 15 35 35 H 1.09003 * 117.50005 * 359.97438 * 20 19 16 36 36 H 1.09003 * 117.50168 * 145.01989 * 20 19 16 37 37 H 1.09003 * 117.49470 * 214.97858 * 21 19 16 38 38 H 1.08995 * 117.50299 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.6438 1.4093 4.4152 18 7 1.3535 0.7822 5.0142 19 6 3.2105 -0.4665 6.0082 20 6 2.2173 -0.6882 7.1507 21 6 3.3318 0.3510 7.2958 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 1.9776 -1.5506 3.8326 28 1 3.6492 -1.1202 3.3980 29 1 3.2802 1.9230 3.5253 30 1 3.6803 2.1094 5.2499 31 1 4.6433 1.0178 4.2258 32 1 0.7114 0.0385 5.2435 33 1 1.3710 1.4819 5.7410 34 1 3.9562 -1.2417 5.8320 35 1 1.2008 -0.3199 7.0125 36 1 2.3099 -1.6092 7.7265 37 1 4.1572 0.1134 7.9669 38 1 3.0487 1.4027 7.2528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687118196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:47 Heat of formation + Delta-G solvation = -15.773895 kcal Electronic energy + Delta-G solvation = -17732.348735 eV Core-core repulsion = 14996.443470 eV Total energy + Delta-G solvation = -2735.905266 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64894 -37.98097 -34.77157 -33.49888 -32.24181 -29.93105 -28.86070 -27.12525 -25.15914 -23.52188 -22.44362 -20.96766 -19.19349 -18.75215 -16.98766 -16.28163 -15.59620 -15.41124 -15.08560 -14.87228 -14.35775 -13.87602 -13.19581 -12.87004 -12.44771 -12.29629 -11.87419 -11.70725 -11.69510 -11.45126 -11.20014 -10.99649 -10.98015 -10.82091 -10.57917 -10.41202 -10.21490 -10.14562 -9.96122 -8.94500 -8.69782 -8.47074 -8.26549 -7.67249 -6.05199 -4.13938 3.28235 3.34674 3.36637 3.61781 3.69759 4.17552 4.40694 4.64712 4.70956 4.77062 4.85524 5.08335 5.26662 5.35148 5.42386 5.46364 5.67073 5.82304 5.87836 5.91233 5.91972 6.04035 6.16293 6.27356 6.83098 6.94651 7.11279 7.28050 7.43047 7.62610 7.66142 7.72228 7.81634 8.04163 8.25911 8.84061 8.92877 9.38546 9.56225 11.00626 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053402 B = 0.004851 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.201013 B = 5771.045360 C = 5892.440242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.046 0.954 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.719 5.719 13 C 0.504 3.496 14 O -0.524 6.524 15 C -0.130 4.130 16 C 0.170 3.830 17 C -0.149 4.149 18 N -0.816 5.816 19 C -0.180 4.180 20 C -0.188 4.188 21 C -0.178 4.178 22 H 0.087 0.913 23 H 0.023 0.977 24 H 0.016 0.984 25 H 0.263 0.737 26 H 0.384 0.616 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.333 0.667 33 H 0.334 0.666 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -4.169 16.202 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.368 5.368 13 C 0.288 3.712 14 O -0.400 6.400 15 C -0.171 4.171 16 C 0.076 3.924 17 C -0.206 4.206 18 N -0.346 5.346 19 C -0.200 4.200 20 C -0.226 4.226 21 C -0.215 4.215 22 H 0.106 0.894 23 H 0.042 0.958 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.216 0.784 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.464 -2.916 15.297 15.953 hybrid contribution 0.584 -1.540 0.194 1.658 sum 4.048 -4.455 15.491 16.619 Atomic orbital electron populations 1.22052 0.98717 0.98826 1.00796 1.18637 0.90856 0.93855 0.80174 0.93589 1.21259 1.32152 1.13082 0.90518 0.92258 1.24891 0.94885 0.94998 0.98993 1.69916 1.35970 1.22566 1.23699 0.86481 0.78576 0.79837 0.82365 1.20623 1.19919 1.21131 1.46531 1.66225 1.13337 1.10729 1.20150 0.79071 0.87811 0.84171 1.90601 1.49402 1.15661 1.84375 1.21725 1.02408 0.98651 0.94270 1.19955 0.89231 0.93201 0.90027 1.22048 0.97363 0.97360 1.03805 1.58765 1.07405 1.17116 1.51330 1.23411 1.02639 1.02789 0.91167 1.23085 0.95681 1.01074 1.02735 1.22912 1.01032 0.97188 1.00329 0.89447 0.95797 0.96516 0.92694 0.78449 0.90039 0.89557 0.88294 0.93669 0.93264 0.85276 0.85251 0.87832 0.88702 0.88986 0.89045 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.94 2.56 -69.09 -0.18 6.77 16 3 H 0.05 1.38 7.58 -51.92 -0.39 0.99 16 4 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.72 -15.25 5.07 -54.93 -0.28 -15.53 16 13 C 0.50 9.99 7.33 -10.98 -0.08 9.91 16 14 O -0.52 -12.24 12.54 5.56 0.07 -12.17 16 15 C -0.13 -1.86 4.90 -27.88 -0.14 -1.99 16 16 C 0.17 2.22 0.66 -131.60 -0.09 2.14 16 17 C -0.15 -2.15 8.26 37.16 0.31 -1.84 16 18 N -0.82 -11.09 6.96 0.74 0.01 -11.08 16 19 C -0.18 -1.86 5.15 -90.62 -0.47 -2.33 16 20 C -0.19 -1.69 9.62 -26.69 -0.26 -1.95 16 21 C -0.18 -1.63 9.42 -26.69 -0.25 -1.88 16 22 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.38 7.12 8.54 -40.82 -0.35 6.77 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.83 5.51 -51.93 -0.29 1.54 16 30 H 0.04 0.58 7.29 -51.93 -0.38 0.20 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.33 4.09 7.50 -39.30 -0.29 3.79 16 33 H 0.33 4.03 7.92 -39.29 -0.31 3.72 16 34 H 0.10 1.03 8.11 -51.93 -0.42 0.60 16 35 H 0.09 0.83 6.15 -51.93 -0.32 0.51 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.87 7.20 -51.93 -0.37 0.50 16 LS Contribution 302.86 15.07 4.56 4.56 Total: -1.00 -30.57 302.86 -7.18 -37.75 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.94 Total: 12.86 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.20 Total: -7.55 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.35 Total: -51.37 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.57 -7.18 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687118196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.971 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds