Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46716 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47202 * 299.99537 * 16 15 13 18 18 N 1.46900 * 109.47382 * 60.00093 * 16 15 13 19 19 C 1.53003 * 109.46639 * 179.97438 * 16 15 13 20 20 C 1.53002 * 117.49596 * 248.74403 * 19 16 15 21 21 C 1.53002 * 117.49528 * 180.08887 * 19 16 15 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 27 27 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 28 28 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 29 29 H 1.08995 * 109.47004 * 60.00358 * 17 16 15 30 30 H 1.08999 * 109.47060 * 180.02562 * 17 16 15 31 31 H 1.08995 * 109.46961 * 300.00492 * 17 16 15 32 32 H 1.00894 * 111.00200 * 59.99364 * 18 16 15 33 33 H 1.00904 * 110.99896 * 183.95272 * 18 16 15 34 34 H 1.08991 * 115.55318 * 34.41083 * 19 16 15 35 35 H 1.09003 * 117.50005 * 359.97438 * 20 19 16 36 36 H 1.09003 * 117.50168 * 145.01989 * 20 19 16 37 37 H 1.09003 * 117.49470 * 214.97858 * 21 19 16 38 38 H 1.08995 * 117.50299 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 6 2.7006 0.2547 4.7589 17 6 3.6438 1.4093 4.4152 18 7 1.3535 0.7822 5.0142 19 6 3.2105 -0.4665 6.0082 20 6 2.2173 -0.6882 7.1507 21 6 3.3318 0.3510 7.2958 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.7088 1.1611 -3.4845 26 1 2.2490 -1.6316 1.1527 27 1 1.9776 -1.5506 3.8326 28 1 3.6492 -1.1202 3.3980 29 1 3.2802 1.9230 3.5253 30 1 3.6803 2.1094 5.2499 31 1 4.6433 1.0178 4.2258 32 1 0.7114 0.0385 5.2435 33 1 1.3710 1.4819 5.7410 34 1 3.9562 -1.2417 5.8320 35 1 1.2008 -0.3199 7.0125 36 1 2.3099 -1.6092 7.7265 37 1 4.1572 0.1134 7.9669 38 1 3.0487 1.4027 7.2528 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687118196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -37.423610 kcal Electronic energy + Delta-G solvation = -17733.287537 eV Core-core repulsion = 14996.443470 eV Total energy + Delta-G solvation = -2736.844068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90504 -39.28067 -36.60246 -34.58439 -34.19086 -31.43194 -30.33649 -28.48799 -27.28834 -24.60591 -23.13922 -22.74639 -20.92387 -19.77912 -18.74439 -17.50721 -17.14537 -16.64974 -16.48187 -16.27934 -15.80137 -15.40720 -14.55038 -14.38752 -14.19969 -13.66317 -13.57699 -13.03240 -12.88054 -12.77879 -12.71774 -12.53641 -12.41412 -12.25703 -12.16137 -12.05363 -11.95132 -11.23149 -11.05205 -10.82834 -10.58347 -10.24430 -9.50801 -9.33548 -8.14104 -6.31534 1.45631 1.46343 1.57112 2.13859 2.39622 2.76383 2.92652 3.15808 3.64316 3.79439 3.88431 4.04868 4.13296 4.34136 4.49379 4.53408 4.72082 4.77270 4.82007 4.93351 4.96591 5.00091 5.03658 5.09511 5.17581 5.24165 5.29924 5.48748 5.58682 5.71889 5.80617 6.02166 6.18285 6.45897 6.72255 6.78597 7.20323 7.37517 7.84458 8.92022 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053402 B = 0.004851 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.201013 B = 5771.045360 C = 5892.440242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.260 1.260 11 H -0.284 1.284 12 N -0.718 5.718 13 C 0.497 3.503 14 O -0.563 6.563 15 C -0.119 4.119 16 C 0.172 3.828 17 C -0.146 4.146 18 N -0.836 5.836 19 C -0.184 4.184 20 C -0.179 4.179 21 C -0.175 4.175 22 H 0.062 0.938 23 H 0.036 0.964 24 H 0.010 0.990 25 H 0.264 0.736 26 H 0.400 0.600 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.340 0.660 33 H 0.341 0.659 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 -6.427 17.362 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.184 1.184 11 H -0.210 1.210 12 N -0.369 5.369 13 C 0.284 3.716 14 O -0.442 6.442 15 C -0.160 4.160 16 C 0.078 3.922 17 C -0.203 4.203 18 N -0.368 5.368 19 C -0.204 4.204 20 C -0.216 4.216 21 C -0.212 4.212 22 H 0.081 0.919 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.234 0.766 27 H 0.123 0.877 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.446 -5.207 16.493 17.858 hybrid contribution 0.275 -0.755 -0.122 0.813 sum 4.721 -5.962 16.371 18.051 Atomic orbital electron populations 1.21856 0.98721 0.99039 0.99254 1.18204 0.90790 0.91712 0.82306 0.98819 1.21590 1.32321 1.13442 0.91011 0.91032 1.25824 0.94922 0.95626 1.02369 1.70072 1.37125 1.24100 1.24454 0.85349 0.77747 0.79201 0.78046 1.20362 1.18352 1.21000 1.46331 1.66566 1.14007 1.09986 1.21150 0.77880 0.87514 0.85052 1.90603 1.50776 1.17700 1.85095 1.21745 1.03828 0.98914 0.91465 1.19864 0.88805 0.92549 0.90947 1.21963 0.98099 0.98096 1.02173 1.58726 1.08088 1.17910 1.52100 1.23186 1.03765 1.03366 0.90118 1.23147 0.95454 1.01506 1.01518 1.22974 1.01614 0.97043 0.99539 0.91914 0.94471 0.97044 0.92674 0.76631 0.87684 0.87200 0.92721 0.92560 0.92275 0.84475 0.84522 0.86707 0.88704 0.87601 0.87755 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.61 2.56 44.24 0.11 14.72 16 3 H -0.01 -0.39 7.58 -2.38 -0.02 -0.40 16 4 C -0.55 -29.52 8.73 25.60 0.22 -29.30 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.72 -30.35 5.07 -446.09 -2.26 -32.61 16 13 C 0.50 19.68 7.33 87.66 0.64 20.32 16 14 O -0.56 -27.18 12.54 -3.04 -0.04 -27.22 16 15 C -0.12 -3.17 4.90 29.85 0.15 -3.02 16 16 C 0.17 4.22 0.66 3.53 0.00 4.23 16 17 C -0.15 -4.16 8.26 71.98 0.59 -3.56 16 18 N -0.84 -21.97 6.96 -151.56 -1.06 -23.03 16 19 C -0.18 -3.26 5.15 -10.79 -0.06 -3.32 16 20 C -0.18 -2.65 9.62 30.62 0.29 -2.35 16 21 C -0.17 -2.71 9.42 30.62 0.29 -2.42 16 22 H 0.06 3.61 6.07 -2.39 -0.01 3.59 16 23 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.40 14.26 8.54 -92.71 -0.79 13.46 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 2.08 5.51 -2.39 -0.01 2.07 16 30 H 0.06 1.42 7.29 -2.39 -0.02 1.40 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.34 7.85 7.50 -89.70 -0.67 7.17 16 33 H 0.34 7.96 7.92 -89.69 -0.71 7.25 16 34 H 0.11 1.82 8.11 -2.39 -0.02 1.80 16 35 H 0.09 1.42 6.15 -2.39 -0.01 1.40 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.09 1.48 7.20 -2.39 -0.02 1.46 16 Total: -1.00 -67.91 302.86 1.18 -66.72 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -1.10 Total: 34.94 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 3.37 Total: -9.75 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -3.07 Total: -109.36 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.04 Total: -27.22 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -67.91 1.18 -66.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687118196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.300 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds