Wall clock time and date at job start Mon Mar 30 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46908 * 109.46797 * 2 1 4 4 C 1.46902 * 110.99842 * 75.71203 * 3 2 1 5 5 C 1.50700 * 109.47027 * 199.54621 * 4 3 2 6 6 H 1.08002 * 119.99702 * 355.01672 * 5 4 3 7 7 C 1.37873 * 119.99724 * 175.02377 * 5 4 3 8 8 N 1.31523 * 119.99874 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00482 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 270.00051 * 9 7 5 11 11 H 1.48499 * 109.47019 * 29.99713 * 9 7 5 12 12 H 1.48496 * 109.47394 * 150.00151 * 9 7 5 13 13 C 1.46901 * 110.99754 * 199.66259 * 3 2 1 14 14 C 1.52995 * 109.46916 * 66.04916 * 13 3 2 15 15 H 1.08996 * 110.86233 * 302.65993 * 14 13 3 16 16 C 1.54629 * 110.97005 * 66.45038 * 14 13 3 17 17 C 1.51288 * 104.19408 * 142.91628 * 16 14 13 18 18 O 1.21286 * 124.94005 * 163.78441 * 17 16 14 19 19 N 1.34413 * 110.11633 * 343.74399 * 17 16 14 20 20 C 1.46496 * 124.34949 * 179.56895 * 19 17 16 21 21 C 1.46760 * 111.30220 * 359.59667 * 19 17 16 22 22 H 1.09001 * 109.47323 * 174.82912 * 1 2 3 23 23 H 1.08994 * 109.47727 * 294.82847 * 1 2 3 24 24 H 1.09002 * 109.47370 * 54.83493 * 1 2 3 25 25 H 1.08999 * 109.47679 * 240.00140 * 2 1 3 26 26 H 1.08999 * 109.46908 * 119.99801 * 2 1 3 27 27 H 1.09004 * 109.47055 * 79.54418 * 4 3 2 28 28 H 1.09003 * 109.47199 * 319.54609 * 4 3 2 29 29 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46940 * 186.04586 * 13 3 2 31 31 H 1.08997 * 109.47510 * 306.04889 * 13 3 2 32 32 H 1.09002 * 110.49152 * 261.59345 * 16 14 13 33 33 H 1.09000 * 110.49121 * 24.23997 * 16 14 13 34 34 H 1.09003 * 109.47132 * 359.97438 * 20 19 17 35 35 H 1.08999 * 109.47097 * 119.98146 * 20 19 17 36 36 H 1.09000 * 109.47848 * 239.97959 * 20 19 17 37 37 H 1.08995 * 110.24470 * 258.01207 * 21 19 17 38 38 H 1.09002 * 110.24689 * 136.01343 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.8759 1.9942 1.3290 5 6 1.9207 3.4951 1.2012 6 1 2.1239 3.9496 0.2428 7 6 1.7024 4.2880 2.3078 8 7 1.7420 5.5979 2.1964 9 14 1.3505 3.5019 3.9654 10 1 -0.1139 3.3110 4.1218 11 1 2.0324 2.1851 4.0436 12 1 1.8529 4.3847 5.0486 13 6 3.4126 1.4510 -0.4615 14 6 3.4821 1.0404 -1.9337 15 1 3.0716 0.0410 -2.0777 16 6 2.7573 2.0707 -2.8303 17 6 3.6052 2.1349 -4.0816 18 8 3.2468 2.6063 -5.1401 19 7 4.8138 1.5945 -3.8494 20 6 5.8774 1.4867 -4.8510 21 6 4.9307 1.1255 -2.4636 22 1 -0.3634 -1.0235 -0.0926 23 1 -0.3634 0.4315 0.9326 24 1 -0.3634 0.5919 -0.8401 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.6901 1.6598 1.9719 28 1 0.9226 1.6950 1.7648 29 1 1.5881 6.1557 2.9748 30 1 3.7844 2.4696 -0.3505 31 1 4.0251 0.7738 0.1339 32 1 1.7506 1.7276 -3.0689 33 1 2.7236 3.0446 -2.3420 34 1 5.5317 1.9085 -5.7948 35 1 6.7557 2.0338 -4.5085 36 1 6.1361 0.4377 -4.9950 37 1 5.5075 1.8366 -1.8722 38 1 5.4007 0.1424 -2.4365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687180312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:24 Heat of formation + Delta-G solvation = -29.669225 kcal Electronic energy + Delta-G solvation = -17776.970697 eV Core-core repulsion = 15040.462884 eV Total energy + Delta-G solvation = -2736.507812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26128 -37.52030 -35.98815 -33.06581 -32.48298 -30.28201 -28.49868 -27.27290 -26.32956 -24.01344 -22.46125 -20.86247 -19.59990 -19.23948 -16.84957 -16.70815 -16.23162 -15.27293 -14.97297 -14.51155 -14.31329 -13.73943 -13.53522 -13.45671 -13.12153 -12.62978 -12.44962 -12.31742 -12.29133 -12.03495 -11.48851 -11.43382 -11.00121 -10.95918 -10.82611 -10.69914 -10.46758 -10.01287 -9.80891 -9.54381 -9.30475 -8.66981 -8.57445 -7.42540 -6.06258 -4.03313 2.79299 3.10583 3.26340 3.34414 3.35165 4.39583 4.42598 4.59762 4.83317 5.02630 5.18346 5.26277 5.27460 5.32168 5.45985 5.55426 5.62756 5.72077 5.77794 5.79625 5.94098 6.06959 6.12820 6.20832 6.35972 6.40688 6.53092 6.60501 6.68806 6.81120 6.88719 7.18348 7.60923 7.87034 7.99078 8.33632 8.63921 9.03014 9.55656 11.06917 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.006256 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.650026 B = 4474.944929 C = 4913.395743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.524 5.524 4 C 0.162 3.838 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.287 1.287 13 C 0.073 3.927 14 C -0.096 4.096 15 H 0.085 0.915 16 C -0.133 4.133 17 C 0.516 3.484 18 O -0.543 6.543 19 N -0.628 5.628 20 C 0.094 3.906 21 C 0.108 3.892 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.022 0.978 27 H -0.012 1.012 28 H 0.026 0.974 29 H 0.263 0.737 30 H 0.091 0.909 31 H 0.026 0.974 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -12.493 -6.920 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.248 5.248 4 C 0.036 3.964 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.194 1.194 12 H -0.213 1.213 13 C -0.056 4.056 14 C -0.115 4.115 15 H 0.103 0.897 16 C -0.173 4.173 17 C 0.305 3.695 18 O -0.420 6.420 19 N -0.363 5.363 20 C -0.048 4.048 21 C -0.016 4.016 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.005 0.995 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.119 0.881 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.718 -11.809 -7.749 15.238 hybrid contribution 0.392 -0.805 1.650 1.877 sum 6.110 -12.614 -6.099 15.286 Atomic orbital electron populations 1.21736 0.95475 1.00075 1.02852 1.22112 0.96148 0.90814 0.99305 1.61972 1.18382 1.14941 1.29527 1.20201 0.95346 0.96211 0.84601 1.21022 1.47991 0.88276 0.97165 0.90139 1.24899 0.95135 0.94692 0.98609 1.69893 1.50275 1.03424 1.30286 0.86902 0.79001 0.79539 0.84514 1.20182 1.19416 1.21269 1.21978 0.90268 1.02113 0.91261 1.22229 0.93266 0.99656 0.96352 0.89654 1.22270 0.99478 1.02759 0.92796 1.21348 0.82441 0.75840 0.89895 1.90680 1.75544 1.46603 1.29218 1.48199 1.14730 1.61247 1.12155 1.21501 0.89813 1.01307 0.92202 1.22130 0.98207 0.99914 0.81317 0.93550 0.92672 0.91867 0.91896 0.95934 0.99475 0.95578 0.92687 0.89064 0.95567 0.88059 0.86600 0.90165 0.92278 0.92446 0.90674 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.96 37.15 0.37 -1.78 16 2 C 0.04 0.69 5.55 -3.82 -0.02 0.67 16 3 N -0.52 -9.81 4.17 -236.07 -0.99 -10.80 16 4 C 0.16 3.70 3.64 -4.97 -0.02 3.68 16 5 C -0.51 -13.73 9.17 -34.44 -0.32 -14.05 16 6 H 0.08 2.37 7.89 -52.49 -0.41 1.96 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 9 Si 0.87 20.99 27.37 -169.99 -4.65 16.33 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.22 6.69 56.52 0.38 -5.84 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.07 1.17 4.06 -3.83 -0.02 1.15 16 14 C -0.10 -1.25 3.05 -88.99 -0.27 -1.52 16 15 H 0.09 1.02 6.26 -51.93 -0.32 0.70 16 16 C -0.13 -2.03 6.25 -26.74 -0.17 -2.20 16 17 C 0.52 8.33 8.02 -10.86 -0.09 8.24 16 18 O -0.54 -10.69 17.35 5.55 0.10 -10.59 16 19 N -0.63 -8.17 3.33 -180.29 -0.60 -8.77 16 20 C 0.09 0.96 11.14 59.84 0.67 1.62 16 21 C 0.11 1.21 6.91 -3.12 -0.02 1.19 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.91 6.89 -51.93 -0.36 0.55 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.83 5.88 -51.93 -0.31 0.53 16 26 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 27 H -0.01 -0.29 7.40 -51.93 -0.38 -0.67 16 28 H 0.03 0.60 5.71 -51.93 -0.30 0.31 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.09 1.68 7.25 -51.93 -0.38 1.30 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.12 2.00 7.86 -51.93 -0.41 1.59 16 34 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -31.81 304.13 -6.96 -38.77 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.20 Total: -2.07 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 0.02 Total: -1.17 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.81 Total: -45.85 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.10 Total: -10.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.65 Total: 16.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.81 -6.96 -38.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.105 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds