Wall clock time and date at job start Mon Mar 30 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46908 * 109.46797 * 2 1 4 4 C 1.46902 * 110.99842 * 75.71203 * 3 2 1 5 5 C 1.50700 * 109.47027 * 199.54621 * 4 3 2 6 6 H 1.08002 * 119.99702 * 355.01672 * 5 4 3 7 7 C 1.37873 * 119.99724 * 175.02377 * 5 4 3 8 8 N 1.31523 * 119.99874 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 120.00482 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46859 * 270.00051 * 9 7 5 11 11 H 1.48499 * 109.47019 * 29.99713 * 9 7 5 12 12 H 1.48496 * 109.47394 * 150.00151 * 9 7 5 13 13 C 1.46901 * 110.99754 * 199.66259 * 3 2 1 14 14 C 1.52995 * 109.46916 * 66.04916 * 13 3 2 15 15 H 1.08996 * 110.86233 * 302.65993 * 14 13 3 16 16 C 1.54629 * 110.97005 * 66.45038 * 14 13 3 17 17 C 1.51288 * 104.19408 * 142.91628 * 16 14 13 18 18 O 1.21286 * 124.94005 * 163.78441 * 17 16 14 19 19 N 1.34413 * 110.11633 * 343.74399 * 17 16 14 20 20 C 1.46496 * 124.34949 * 179.56895 * 19 17 16 21 21 C 1.46760 * 111.30220 * 359.59667 * 19 17 16 22 22 H 1.09001 * 109.47323 * 174.82912 * 1 2 3 23 23 H 1.08994 * 109.47727 * 294.82847 * 1 2 3 24 24 H 1.09002 * 109.47370 * 54.83493 * 1 2 3 25 25 H 1.08999 * 109.47679 * 240.00140 * 2 1 3 26 26 H 1.08999 * 109.46908 * 119.99801 * 2 1 3 27 27 H 1.09004 * 109.47055 * 79.54418 * 4 3 2 28 28 H 1.09003 * 109.47199 * 319.54609 * 4 3 2 29 29 H 0.96994 * 120.00095 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46940 * 186.04586 * 13 3 2 31 31 H 1.08997 * 109.47510 * 306.04889 * 13 3 2 32 32 H 1.09002 * 110.49152 * 261.59345 * 16 14 13 33 33 H 1.09000 * 110.49121 * 24.23997 * 16 14 13 34 34 H 1.09003 * 109.47132 * 359.97438 * 20 19 17 35 35 H 1.08999 * 109.47097 * 119.98146 * 20 19 17 36 36 H 1.09000 * 109.47848 * 239.97959 * 20 19 17 37 37 H 1.08995 * 110.24470 * 258.01207 * 21 19 17 38 38 H 1.09002 * 110.24689 * 136.01343 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.8759 1.9942 1.3290 5 6 1.9207 3.4951 1.2012 6 1 2.1239 3.9496 0.2428 7 6 1.7024 4.2880 2.3078 8 7 1.7420 5.5979 2.1964 9 14 1.3505 3.5019 3.9654 10 1 -0.1139 3.3110 4.1218 11 1 2.0324 2.1851 4.0436 12 1 1.8529 4.3847 5.0486 13 6 3.4126 1.4510 -0.4615 14 6 3.4821 1.0404 -1.9337 15 1 3.0716 0.0410 -2.0777 16 6 2.7573 2.0707 -2.8303 17 6 3.6052 2.1349 -4.0816 18 8 3.2468 2.6063 -5.1401 19 7 4.8138 1.5945 -3.8494 20 6 5.8774 1.4867 -4.8510 21 6 4.9307 1.1255 -2.4636 22 1 -0.3634 -1.0235 -0.0926 23 1 -0.3634 0.4315 0.9326 24 1 -0.3634 0.5919 -0.8401 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 2.6901 1.6598 1.9719 28 1 0.9226 1.6950 1.7648 29 1 1.5881 6.1557 2.9748 30 1 3.7844 2.4696 -0.3505 31 1 4.0251 0.7738 0.1339 32 1 1.7506 1.7276 -3.0689 33 1 2.7236 3.0446 -2.3420 34 1 5.5317 1.9085 -5.7948 35 1 6.7557 2.0338 -4.5085 36 1 6.1361 0.4377 -4.9950 37 1 5.5075 1.8366 -1.8722 38 1 5.4007 0.1424 -2.4365 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687180312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:24 Heat of formation + Delta-G solvation = -52.252642 kcal Electronic energy + Delta-G solvation = -17777.949987 eV Core-core repulsion = 15040.462884 eV Total energy + Delta-G solvation = -2737.487103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44379 -38.92389 -37.28824 -34.76174 -33.98064 -31.69341 -30.02750 -28.50099 -27.54410 -25.31886 -24.02908 -22.26092 -20.86247 -20.47673 -18.92367 -17.86326 -17.37852 -16.67659 -16.35246 -15.96965 -15.76053 -15.22541 -14.80421 -14.62871 -14.49582 -14.28220 -13.99264 -13.43308 -13.25776 -13.19599 -13.03929 -12.85344 -12.47736 -12.27820 -12.19480 -12.11345 -11.92597 -11.81387 -11.39270 -11.16633 -10.84843 -10.72151 -9.71028 -8.88920 -8.23377 -6.25230 1.37312 1.37619 1.48173 1.51902 2.09006 2.37501 3.07805 3.18934 3.43952 3.71738 3.87715 4.07495 4.32144 4.40264 4.49189 4.54569 4.58553 4.62119 4.72072 4.77141 4.81337 4.84102 4.86587 5.00160 5.02582 5.10484 5.12101 5.26386 5.34544 5.46439 5.59166 5.65789 6.04443 6.08608 6.50834 6.74436 6.82420 7.12244 7.38272 8.93491 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.006256 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.650026 B = 4474.944929 C = 4913.395743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.543 5.543 4 C 0.173 3.827 5 C -0.506 4.506 6 H 0.038 0.962 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.248 1.248 12 H -0.286 1.286 13 C 0.076 3.924 14 C -0.081 4.081 15 H 0.110 0.890 16 C -0.132 4.132 17 C 0.508 3.492 18 O -0.588 6.588 19 N -0.621 5.621 20 C 0.088 3.912 21 C 0.110 3.890 22 H 0.078 0.922 23 H 0.034 0.966 24 H 0.051 0.949 25 H 0.093 0.907 26 H 0.030 0.970 27 H -0.011 1.011 28 H 0.027 0.973 29 H 0.264 0.736 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.174 -15.953 -6.239 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.267 5.267 4 C 0.046 3.954 5 C -0.545 4.545 6 H 0.056 0.944 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.172 1.172 12 H -0.212 1.212 13 C -0.053 4.053 14 C -0.100 4.100 15 H 0.128 0.872 16 C -0.172 4.172 17 C 0.298 3.702 18 O -0.470 6.470 19 N -0.354 5.354 20 C -0.053 4.053 21 C -0.012 4.012 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.007 0.993 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.782 -15.316 -7.067 18.180 hybrid contribution 0.117 0.292 1.344 1.381 sum 6.900 -15.024 -5.723 17.495 Atomic orbital electron populations 1.21745 0.95322 1.01733 1.01263 1.22236 0.96296 0.88742 1.01092 1.61833 1.20320 1.17458 1.27133 1.19919 0.95233 0.93302 0.86960 1.21302 1.46699 0.91080 0.95371 0.94416 1.25835 0.95163 0.95066 1.03100 1.70065 1.52359 1.05303 1.31590 0.85764 0.79211 0.79258 0.78963 1.19423 1.17201 1.21170 1.21915 0.89101 1.00755 0.93489 1.22136 0.94565 0.99658 0.93634 0.87173 1.22167 0.99916 1.02041 0.93089 1.21430 0.83676 0.75859 0.89276 1.90647 1.76718 1.48830 1.30762 1.48331 1.14104 1.59604 1.13369 1.21745 0.89216 1.03538 0.90815 1.22273 0.96899 1.02089 0.79961 0.90315 0.94654 0.93022 0.88880 0.95124 0.99310 0.95463 0.92692 0.92566 0.93409 0.88406 0.89743 0.91763 0.90421 0.89332 0.90515 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.96 71.98 0.72 -3.22 16 2 C 0.04 1.22 5.55 86.30 0.48 1.70 16 3 N -0.54 -19.75 4.17 -900.79 -3.76 -23.51 16 4 C 0.17 7.76 3.64 85.56 0.31 8.07 16 5 C -0.51 -28.31 9.17 25.60 0.23 -28.07 16 6 H 0.04 2.37 7.89 -2.91 -0.02 2.34 16 7 C 0.00 0.29 5.47 84.65 0.46 0.75 16 8 N -0.95 -59.36 13.96 21.45 0.30 -59.07 16 9 Si 0.94 43.29 27.37 68.60 1.88 45.17 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.25 -10.46 6.69 99.48 0.67 -9.79 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 C 0.08 2.33 4.06 86.30 0.35 2.68 16 14 C -0.08 -1.93 3.05 -9.74 -0.03 -1.96 16 15 H 0.11 2.16 6.26 -2.39 -0.01 2.14 16 16 C -0.13 -4.08 6.25 30.59 0.19 -3.89 16 17 C 0.51 16.45 8.02 87.90 0.71 17.16 16 18 O -0.59 -23.83 17.35 -3.05 -0.05 -23.88 16 19 N -0.62 -14.90 3.33 -842.91 -2.81 -17.71 16 20 C 0.09 1.57 11.14 127.77 1.42 2.99 16 21 C 0.11 2.11 6.91 86.83 0.60 2.71 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.03 1.09 6.89 -2.39 -0.02 1.08 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.09 2.03 5.88 -2.39 -0.01 2.02 16 26 H 0.03 0.82 8.00 -2.39 -0.02 0.81 16 27 H -0.01 -0.48 7.40 -2.38 -0.02 -0.50 16 28 H 0.03 1.22 5.71 -2.39 -0.01 1.21 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.06 2.12 7.25 -2.39 -0.02 2.10 16 31 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 32 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.08 3.15 7.86 -2.39 -0.02 3.13 16 34 H 0.06 1.38 7.53 -2.39 -0.02 1.36 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.51 7.89 -2.39 -0.02 1.49 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.58 304.13 1.98 -70.59 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.98 Total: 9.48 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.45 Total: -1.09 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.27 Total: -100.28 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.88 Total: 45.17 kcal Total: -72.58 1.98 -70.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.342 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds