Wall clock time and date at job start Mon Mar 30 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46891 * 109.47557 * 2 1 4 4 C 1.46897 * 111.00206 * 200.09627 * 3 2 1 5 5 C 1.50697 * 109.47283 * 60.22074 * 4 3 2 6 6 H 1.08002 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00495 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99774 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47320 * 60.00321 * 9 7 5 11 11 H 1.48505 * 109.46973 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47427 * 300.00001 * 9 7 5 13 13 C 1.46902 * 111.00293 * 76.13927 * 3 2 1 14 14 C 1.52991 * 109.47547 * 202.79602 * 13 3 2 15 15 H 1.09000 * 110.85758 * 56.66012 * 14 13 3 16 16 C 1.54622 * 110.97300 * 292.87198 * 14 13 3 17 17 C 1.51288 * 104.19771 * 217.04477 * 16 14 13 18 18 O 1.21276 * 124.94130 * 196.22792 * 17 16 14 19 19 N 1.34421 * 110.11286 * 16.49367 * 17 16 14 20 20 C 1.46494 * 124.34888 * 180.15720 * 19 17 16 21 21 C 1.46762 * 111.30220 * 0.02562 * 19 17 16 22 22 H 1.08994 * 109.47867 * 182.38628 * 1 2 3 23 23 H 1.08999 * 109.46779 * 302.38672 * 1 2 3 24 24 H 1.09000 * 109.47199 * 62.38325 * 1 2 3 25 25 H 1.09003 * 109.46746 * 239.99999 * 2 1 3 26 26 H 1.08997 * 109.47093 * 120.00397 * 2 1 3 27 27 H 1.09001 * 109.47116 * 180.21786 * 4 3 2 28 28 H 1.09000 * 109.47524 * 300.21781 * 4 3 2 29 29 H 0.96993 * 119.99978 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46865 * 82.79800 * 13 3 2 31 31 H 1.09000 * 109.47157 * 322.80434 * 13 3 2 32 32 H 1.09002 * 110.49208 * 98.36621 * 16 14 13 33 33 H 1.09004 * 110.60093 * 335.77986 * 16 14 13 34 34 H 1.09005 * 109.47266 * 0.03264 * 20 19 17 35 35 H 1.09005 * 109.46838 * 120.02808 * 20 19 17 36 36 H 1.08993 * 109.47478 * 240.02561 * 20 19 17 37 37 H 1.08996 * 110.39111 * 224.25497 * 21 19 17 38 38 H 1.08999 * 110.11747 * 102.33135 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4094 1.4518 -0.4712 5 6 3.4895 0.9158 -1.8773 6 1 2.5973 0.5604 -2.3714 7 6 4.7019 0.8779 -2.5328 8 7 5.7885 1.3102 -1.9310 9 14 4.8012 0.2127 -4.2755 10 1 3.9371 1.0279 -5.1665 11 1 6.2061 0.2805 -4.7519 12 1 4.3394 -1.1985 -4.2938 13 6 1.8855 1.9908 1.3315 14 6 1.8489 3.5144 1.1972 15 1 1.0417 3.8263 0.5344 16 6 3.2099 4.0595 0.7062 17 6 3.3815 5.3609 1.4583 18 8 4.1711 6.2336 1.1653 19 7 2.5356 5.4067 2.5019 20 6 2.4379 6.5292 3.4382 21 6 1.7201 4.1891 2.5810 22 1 -0.3634 -1.0267 0.0428 23 1 -0.3633 0.5505 0.8678 24 1 -0.3633 0.4764 -0.9106 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7482 2.4878 -0.4575 28 1 4.0440 0.8534 0.1825 29 1 6.6414 1.2839 -2.3922 30 1 2.7350 1.7009 1.9499 31 1 0.9626 1.6447 1.7968 32 1 3.1832 4.2406 -0.3684 33 1 4.0133 3.3662 0.9553 34 1 3.1499 7.3036 3.1525 35 1 1.4274 6.9372 3.4121 36 1 2.6636 6.1821 4.4464 37 1 0.6790 4.4416 2.7818 38 1 2.1048 3.5302 3.3595 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687180313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:27 Heat of formation + Delta-G solvation = -26.655555 kcal Electronic energy + Delta-G solvation = -17890.410129 eV Core-core repulsion = 15154.032999 eV Total energy + Delta-G solvation = -2736.377130 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19985 -37.38284 -35.86865 -32.96608 -32.56615 -29.86853 -28.51199 -26.93913 -26.18533 -24.01308 -22.44903 -20.65604 -19.76603 -19.29381 -16.58188 -16.37016 -16.08743 -15.15235 -14.98654 -14.34603 -14.18460 -13.75191 -13.46630 -13.40856 -12.95412 -12.60024 -12.27052 -12.23570 -12.12231 -11.68485 -11.56386 -11.13601 -10.94241 -10.86631 -10.63662 -10.54352 -10.36281 -10.07782 -9.85984 -9.35710 -8.99768 -8.59639 -8.39713 -7.27364 -6.02089 -4.02859 2.90563 3.18578 3.33996 3.39099 3.41151 4.41498 4.57870 4.70247 4.91908 5.21979 5.25382 5.33974 5.39347 5.40297 5.52582 5.68138 5.72270 5.81105 5.86318 5.97534 6.03303 6.07702 6.19109 6.34690 6.48419 6.54890 6.67270 6.71013 6.81770 7.26448 7.32790 7.36791 7.79509 8.08389 8.20304 8.45004 8.55136 9.03697 9.60843 11.08662 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.007178 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.403446 B = 3899.782275 C = 4954.945573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.173 3.827 5 C -0.512 4.512 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.064 3.936 14 C -0.087 4.087 15 H 0.095 0.905 16 C -0.145 4.145 17 C 0.516 3.484 18 O -0.539 6.539 19 N -0.630 5.630 20 C 0.094 3.906 21 C 0.109 3.891 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.016 0.984 27 H 0.054 0.946 28 H -0.013 1.013 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.087 3.112 10.179 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 N -0.260 5.260 4 C 0.048 3.952 5 C -0.550 4.550 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.065 4.065 14 C -0.107 4.107 15 H 0.113 0.887 16 C -0.184 4.184 17 C 0.305 3.695 18 O -0.416 6.416 19 N -0.366 5.366 20 C -0.048 4.048 21 C -0.015 4.015 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.107 0.893 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.005 0.995 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.753 3.930 9.722 14.321 hybrid contribution 0.637 -0.839 -0.268 1.087 sum -9.116 3.091 9.454 13.492 Atomic orbital electron populations 1.21795 0.96755 0.99947 1.01564 1.21998 0.94007 0.90312 1.01135 1.62058 1.25767 1.16999 1.21195 1.20214 0.81425 0.98543 0.94994 1.21129 0.93702 1.41353 0.98853 0.91945 1.24968 0.95716 0.95671 0.98120 1.69932 0.99021 1.46979 1.37563 0.86601 0.76918 0.79365 0.84761 1.20186 1.21391 1.20374 1.21995 0.99968 0.92332 0.92235 1.22096 0.97960 0.96018 0.94588 0.88682 1.22722 0.99200 0.94156 1.02362 1.21442 0.78902 0.88825 0.80354 1.90678 1.37617 1.43428 1.69878 1.48231 1.40005 1.18947 1.29420 1.21484 1.02056 0.88992 0.92246 1.22116 0.95224 0.85492 0.98654 0.93599 0.93735 0.92350 0.89283 0.96523 0.92805 0.99511 0.92820 0.95108 0.91618 0.87021 0.86830 0.90195 0.92466 0.92490 0.90713 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.05 37.15 0.37 -1.71 16 2 C 0.05 0.98 5.48 -3.83 -0.02 0.96 16 3 N -0.54 -10.54 4.38 -236.09 -1.03 -11.58 16 4 C 0.17 4.21 4.09 -4.98 -0.02 4.19 16 5 C -0.51 -13.84 8.19 -34.44 -0.28 -14.12 16 6 H 0.06 1.67 6.90 -52.49 -0.36 1.31 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 1.00 4.38 -3.83 -0.02 0.98 16 14 C -0.09 -1.26 3.40 -88.99 -0.30 -1.56 16 15 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 16 C -0.14 -2.58 4.45 -26.74 -0.12 -2.69 16 17 C 0.52 9.25 8.02 -10.86 -0.09 9.16 16 18 O -0.54 -11.68 17.35 5.56 0.10 -11.58 16 19 N -0.63 -8.79 3.33 -180.29 -0.60 -9.39 16 20 C 0.09 1.02 11.14 59.84 0.67 1.69 16 21 C 0.11 1.27 6.91 -3.12 -0.02 1.24 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.84 6.11 -51.93 -0.32 1.53 16 26 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 27 H 0.05 1.35 3.88 -51.93 -0.20 1.15 16 28 H -0.01 -0.34 8.14 -51.93 -0.42 -0.77 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.50 7.88 -51.93 -0.41 0.10 16 31 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 32 H 0.11 2.21 7.51 -51.93 -0.39 1.82 16 33 H 0.11 2.22 6.43 -51.93 -0.33 1.89 16 34 H 0.08 0.97 7.53 -51.93 -0.39 0.57 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -31.40 301.43 -7.22 -38.61 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.01 Total: -1.16 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.07 Total: -0.37 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.90 Total: -46.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.10 Total: -11.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.40 -7.22 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.959 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds