Wall clock time and date at job start Mon Mar 30 2020 03:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46891 * 109.47557 * 2 1 4 4 C 1.46897 * 111.00206 * 200.09627 * 3 2 1 5 5 C 1.50697 * 109.47283 * 60.22074 * 4 3 2 6 6 H 1.08002 * 119.99776 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00495 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99774 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00192 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47320 * 60.00321 * 9 7 5 11 11 H 1.48505 * 109.46973 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47427 * 300.00001 * 9 7 5 13 13 C 1.46902 * 111.00293 * 76.13927 * 3 2 1 14 14 C 1.52991 * 109.47547 * 202.79602 * 13 3 2 15 15 H 1.09000 * 110.85758 * 56.66012 * 14 13 3 16 16 C 1.54622 * 110.97300 * 292.87198 * 14 13 3 17 17 C 1.51288 * 104.19771 * 217.04477 * 16 14 13 18 18 O 1.21276 * 124.94130 * 196.22792 * 17 16 14 19 19 N 1.34421 * 110.11286 * 16.49367 * 17 16 14 20 20 C 1.46494 * 124.34888 * 180.15720 * 19 17 16 21 21 C 1.46762 * 111.30220 * 0.02562 * 19 17 16 22 22 H 1.08994 * 109.47867 * 182.38628 * 1 2 3 23 23 H 1.08999 * 109.46779 * 302.38672 * 1 2 3 24 24 H 1.09000 * 109.47199 * 62.38325 * 1 2 3 25 25 H 1.09003 * 109.46746 * 239.99999 * 2 1 3 26 26 H 1.08997 * 109.47093 * 120.00397 * 2 1 3 27 27 H 1.09001 * 109.47116 * 180.21786 * 4 3 2 28 28 H 1.09000 * 109.47524 * 300.21781 * 4 3 2 29 29 H 0.96993 * 119.99978 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46865 * 82.79800 * 13 3 2 31 31 H 1.09000 * 109.47157 * 322.80434 * 13 3 2 32 32 H 1.09002 * 110.49208 * 98.36621 * 16 14 13 33 33 H 1.09004 * 110.60093 * 335.77986 * 16 14 13 34 34 H 1.09005 * 109.47266 * 0.03264 * 20 19 17 35 35 H 1.09005 * 109.46838 * 120.02808 * 20 19 17 36 36 H 1.08993 * 109.47478 * 240.02561 * 20 19 17 37 37 H 1.08996 * 110.39111 * 224.25497 * 21 19 17 38 38 H 1.08999 * 110.11747 * 102.33135 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4094 1.4518 -0.4712 5 6 3.4895 0.9158 -1.8773 6 1 2.5973 0.5604 -2.3714 7 6 4.7019 0.8779 -2.5328 8 7 5.7885 1.3102 -1.9310 9 14 4.8012 0.2127 -4.2755 10 1 3.9371 1.0279 -5.1665 11 1 6.2061 0.2805 -4.7519 12 1 4.3394 -1.1985 -4.2938 13 6 1.8855 1.9908 1.3315 14 6 1.8489 3.5144 1.1972 15 1 1.0417 3.8263 0.5344 16 6 3.2099 4.0595 0.7062 17 6 3.3815 5.3609 1.4583 18 8 4.1711 6.2336 1.1653 19 7 2.5356 5.4067 2.5019 20 6 2.4379 6.5292 3.4382 21 6 1.7201 4.1891 2.5810 22 1 -0.3634 -1.0267 0.0428 23 1 -0.3633 0.5505 0.8678 24 1 -0.3633 0.4764 -0.9106 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.7482 2.4878 -0.4575 28 1 4.0440 0.8534 0.1825 29 1 6.6414 1.2839 -2.3922 30 1 2.7350 1.7009 1.9499 31 1 0.9626 1.6447 1.7968 32 1 3.1832 4.2406 -0.3684 33 1 4.0133 3.3662 0.9553 34 1 3.1499 7.3036 3.1525 35 1 1.4274 6.9372 3.4121 36 1 2.6636 6.1821 4.4464 37 1 0.6790 4.4416 2.7818 38 1 2.1048 3.5302 3.3595 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687180313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:27 Heat of formation + Delta-G solvation = -48.801341 kcal Electronic energy + Delta-G solvation = -17891.370443 eV Core-core repulsion = 15154.032999 eV Total energy + Delta-G solvation = -2737.337443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.50292 -38.90236 -37.28108 -34.76144 -34.05328 -31.32269 -30.02729 -28.29374 -27.53073 -25.49838 -24.10230 -22.04919 -21.21131 -20.57868 -18.43735 -17.81503 -17.38851 -16.74394 -16.39948 -15.83603 -15.82981 -15.21228 -14.75508 -14.67544 -14.29326 -14.10177 -14.01026 -13.38665 -13.25853 -13.10853 -12.85985 -12.70640 -12.69488 -12.34612 -12.27675 -12.01672 -11.89251 -11.69658 -11.53015 -10.99513 -10.77881 -10.46640 -9.70812 -8.91232 -8.16722 -6.24134 1.40979 1.43690 1.48669 1.51169 2.08531 2.42131 3.15972 3.23633 3.44765 3.67496 3.97751 4.12016 4.36400 4.39559 4.50965 4.55147 4.63315 4.68987 4.73850 4.77209 4.83023 4.87180 4.87485 5.00745 5.15662 5.19413 5.31944 5.36259 5.50657 5.57330 5.60181 5.69910 6.03049 6.14365 6.43892 6.76998 6.93641 7.11027 7.44409 8.93815 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.007178 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.403446 B = 3899.782275 C = 4954.945573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 N -0.541 5.541 4 C 0.186 3.814 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.065 3.935 14 C -0.078 4.078 15 H 0.102 0.898 16 C -0.143 4.143 17 C 0.508 3.492 18 O -0.589 6.589 19 N -0.620 5.620 20 C 0.088 3.912 21 C 0.114 3.886 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.021 0.979 27 H 0.042 0.958 28 H -0.048 1.048 29 H 0.261 0.739 30 H 0.022 0.978 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 2.787 11.551 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 N -0.265 5.265 4 C 0.060 3.940 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.064 4.064 14 C -0.098 4.098 15 H 0.120 0.880 16 C -0.184 4.184 17 C 0.297 3.703 18 O -0.470 6.470 19 N -0.353 5.353 20 C -0.053 4.053 21 C -0.008 4.008 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.060 0.940 28 H -0.031 1.031 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.768 3.584 11.137 17.318 hybrid contribution 1.508 -0.754 -0.614 1.794 sum -11.259 2.831 10.523 15.669 Atomic orbital electron populations 1.21687 0.93176 1.01704 1.02218 1.22044 0.96806 0.89147 0.99783 1.62010 1.22254 1.18254 1.24000 1.19894 0.83838 0.96827 0.93469 1.21519 0.93664 1.40685 1.00102 0.91940 1.25843 0.95444 0.96090 1.02308 1.70074 0.99505 1.48580 1.39295 0.85557 0.76859 0.79162 0.79784 1.19516 1.21322 1.19183 1.22116 1.01428 0.92768 0.90057 1.22074 0.95581 0.95373 0.96723 0.88019 1.22526 1.00789 0.94330 1.00716 1.21388 0.79245 0.88115 0.81540 1.90638 1.39938 1.44897 1.71540 1.48333 1.38454 1.20325 1.28162 1.21764 1.03460 0.87610 0.92426 1.22304 0.97289 0.84424 0.96761 0.91504 0.91387 0.93138 0.92566 0.96076 0.94014 1.03061 0.92994 0.95951 0.87708 0.90257 0.89579 0.92095 0.89339 0.89807 0.86371 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 10.05 71.98 0.72 -2.67 16 2 C 0.05 1.79 5.48 86.30 0.47 2.26 16 3 N -0.54 -21.17 4.38 -900.85 -3.95 -25.12 16 4 C 0.19 9.46 4.09 85.56 0.35 9.81 16 5 C -0.52 -29.07 8.19 25.60 0.21 -28.86 16 6 H 0.06 3.41 6.90 -2.91 -0.02 3.38 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 9 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 C 0.06 1.90 4.38 86.30 0.38 2.28 16 14 C -0.08 -2.13 3.40 -9.74 -0.03 -2.16 16 15 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.14 -5.33 4.45 30.59 0.14 -5.20 16 17 C 0.51 18.57 8.02 87.90 0.71 19.28 16 18 O -0.59 -26.69 17.35 -3.02 -0.05 -26.74 16 19 N -0.62 -15.88 3.33 -842.89 -2.81 -18.69 16 20 C 0.09 1.64 11.14 127.77 1.42 3.07 16 21 C 0.11 2.20 6.91 86.84 0.60 2.80 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.46 6.75 -2.39 -0.02 1.44 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 2.35 6.11 -2.39 -0.01 2.34 16 26 H 0.02 0.72 7.99 -2.39 -0.02 0.70 16 27 H 0.04 2.24 3.88 -2.39 -0.01 2.23 16 28 H -0.05 -2.74 8.14 -2.39 -0.02 -2.76 16 29 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 30 H 0.02 0.71 7.88 -2.39 -0.02 0.69 16 31 H 0.10 2.31 6.47 -2.39 -0.02 2.30 16 32 H 0.08 3.40 7.51 -2.39 -0.02 3.38 16 33 H 0.09 3.65 6.43 -2.39 -0.02 3.63 16 34 H 0.06 1.40 7.53 -2.38 -0.02 1.38 16 35 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.45 7.89 -2.39 -0.02 1.43 16 Total: -1.00 -72.70 301.43 1.96 -70.74 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.03 Total: 8.52 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 5.43 Total: 1.13 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -6.47 Total: -100.48 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.74 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.70 1.96 -70.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.936 kcal (2) G-P(sol) polarization free energy of solvation -72.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds