Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47475 * 2 1 4 4 C 1.50698 * 109.47479 * 239.99402 * 2 1 3 5 5 H 1.08000 * 119.99842 * 240.00825 * 4 2 1 6 6 C 1.37868 * 119.99993 * 59.99898 * 4 2 1 7 7 N 1.31520 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46948 * 90.00436 * 8 6 4 10 10 H 1.48497 * 109.47286 * 210.00339 * 8 6 4 11 11 H 1.48497 * 109.47301 * 330.00574 * 8 6 4 12 12 N 1.46901 * 109.46567 * 119.99594 * 2 1 3 13 13 C 1.46900 * 110.99830 * 176.04973 * 12 2 1 14 14 C 1.46903 * 111.00029 * 299.99917 * 12 2 1 15 15 C 1.53003 * 109.47289 * 162.76293 * 14 12 2 16 16 H 1.09005 * 110.85229 * 309.51723 * 15 14 12 17 17 C 1.54624 * 110.96923 * 73.30760 * 15 14 12 18 18 C 1.51386 * 104.14683 * 142.94434 * 17 15 14 19 19 O 1.21284 * 124.93334 * 163.74527 * 18 17 15 20 20 N 1.34420 * 110.12344 * 343.74029 * 18 17 15 21 21 C 1.46496 * 124.34927 * 179.62022 * 20 18 17 22 22 C 1.46758 * 111.29896 * 359.59970 * 20 18 17 23 23 H 1.08997 * 109.47475 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47226 * 300.01103 * 1 2 3 25 25 H 1.09009 * 109.46634 * 60.00504 * 1 2 3 26 26 H 0.96996 * 120.00348 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46856 * 191.82901 * 13 12 2 28 28 H 1.09000 * 109.46906 * 311.82294 * 13 12 2 29 29 H 1.09000 * 109.47500 * 71.82853 * 13 12 2 30 30 H 1.08997 * 109.47257 * 42.76411 * 14 12 2 31 31 H 1.09003 * 109.47393 * 282.76213 * 14 12 2 32 32 H 1.09003 * 110.48723 * 261.63053 * 17 15 14 33 33 H 1.08994 * 110.49022 * 24.27526 * 17 15 14 34 34 H 1.09002 * 109.47087 * 269.97726 * 21 20 18 35 35 H 1.09002 * 109.47229 * 29.97510 * 21 20 18 36 36 H 1.08999 * 109.47289 * 149.98132 * 21 20 18 37 37 H 1.08998 * 110.24767 * 258.00985 * 22 20 18 38 38 H 1.09001 * 110.24514 * 136.01968 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8299 -2.6035 8 14 2.3228 -1.1199 -4.0077 9 1 1.3451 -2.1620 -4.4121 10 1 2.4876 -0.1407 -5.1118 11 1 3.6311 -1.7569 -3.7116 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7944 1.1873 14 6 1.5485 -0.0262 2.4211 15 6 1.6973 -0.9771 3.6105 16 1 1.2532 -1.9477 3.3892 17 6 3.1817 -1.1274 4.0165 18 6 3.1448 -1.2167 5.5273 19 8 4.0554 -1.6159 6.2218 20 7 1.9563 -0.7890 5.9870 21 6 1.5830 -0.7505 7.4030 22 6 1.0808 -0.3653 4.8880 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 0.7097 1.1614 -3.4845 27 1 3.8076 -1.4852 1.9664 28 1 3.8154 -1.1624 0.2159 29 1 3.9192 0.1884 1.3705 30 1 0.5001 0.2481 2.3042 31 1 2.1414 0.8714 2.5972 32 1 3.6036 -2.0376 3.5902 33 1 3.7541 -0.2557 3.6995 34 1 1.1185 -1.6963 7.6822 35 1 2.4745 -0.5906 8.0096 36 1 0.8783 0.0639 7.5710 37 1 1.0653 0.7222 4.8159 38 1 0.0717 -0.7482 5.0405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687180710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -21.503184 kcal Electronic energy + Delta-G solvation = -17779.773663 eV Core-core repulsion = 15043.619957 eV Total energy + Delta-G solvation = -2736.153706 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40370 -37.49593 -36.07000 -33.54435 -32.08572 -29.19771 -28.59684 -26.96654 -25.92488 -24.56905 -22.92135 -20.65087 -19.59169 -19.32804 -16.76224 -16.38061 -16.12032 -15.30187 -15.19008 -14.57139 -14.11747 -13.69007 -13.54682 -13.39758 -12.93311 -12.60664 -12.45857 -12.26054 -11.89445 -11.76093 -11.65430 -11.02844 -10.81619 -10.68772 -10.65175 -10.56164 -10.17066 -9.95981 -9.92346 -9.48151 -8.90188 -8.76531 -8.44243 -7.23808 -6.03993 -4.08392 2.63709 3.00481 3.29554 3.36197 3.39235 4.35507 4.44139 4.52197 4.78399 5.08380 5.12796 5.23808 5.26711 5.36660 5.46926 5.54789 5.60627 5.75801 5.88440 5.95875 6.13353 6.19964 6.39607 6.43559 6.47948 6.79060 6.81545 7.01068 7.06515 7.12458 7.48567 7.69089 7.79801 8.16480 8.19701 8.28776 8.56321 8.98029 9.56840 11.02834 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049852 B = 0.005072 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.529289 B = 5519.481022 C = 5934.629203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.022 3.978 14 C 0.058 3.942 15 C -0.091 4.091 16 H 0.099 0.901 17 C -0.148 4.148 18 C 0.515 3.485 19 O -0.543 6.543 20 N -0.627 5.627 21 C 0.096 3.904 22 C 0.106 3.894 23 H 0.035 0.965 24 H 0.009 0.991 25 H 0.085 0.915 26 H 0.260 0.740 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.009 0.991 30 H 0.082 0.918 31 H 0.026 0.974 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 -0.732 13.495 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.105 3.895 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.126 4.126 14 C -0.071 4.071 15 C -0.110 4.110 16 H 0.117 0.883 17 C -0.188 4.188 18 C 0.304 3.696 19 O -0.420 6.420 20 N -0.361 5.361 21 C -0.046 4.046 22 C -0.017 4.017 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.027 0.973 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.124 -1.286 13.782 13.887 hybrid contribution 0.475 0.492 -0.846 1.088 sum -0.649 -0.794 12.936 12.976 Atomic orbital electron populations 1.21878 0.97750 0.99694 0.99852 1.19245 0.92285 0.92042 0.85904 0.98460 1.21153 1.31035 1.12293 0.89752 0.91780 1.24925 0.95207 0.95051 0.99033 1.69887 1.36986 1.22989 1.23429 0.86526 0.79248 0.79293 0.82501 1.20668 1.21365 1.19926 1.62068 1.09360 1.52530 1.01991 1.22580 0.88762 0.98461 1.02780 1.22122 1.01503 0.93412 0.90034 1.22209 0.93886 1.01516 0.93393 0.88308 1.22700 0.99048 1.05438 0.91637 1.21271 0.81327 0.75621 0.91419 1.90685 1.39458 1.47484 1.64385 1.48233 1.16267 1.64719 1.06912 1.21499 1.01235 1.01533 0.80333 1.22197 0.94178 0.99779 0.85577 0.94612 0.97221 0.89677 0.92986 0.92845 0.90221 0.97266 0.90025 0.95545 0.87534 0.87894 0.92760 0.90950 0.91154 0.91015 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.80 37.16 0.33 -2.76 16 2 C 0.21 5.08 2.06 -68.86 -0.14 4.94 16 3 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.33 7.77 -34.44 -0.27 -13.60 16 5 H 0.06 1.69 6.47 -52.49 -0.34 1.35 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.54 -10.64 4.57 -236.28 -1.08 -11.72 16 13 C 0.02 0.42 8.29 60.06 0.50 0.91 16 14 C 0.06 0.93 4.40 -3.82 -0.02 0.91 16 15 C -0.09 -1.18 3.32 -88.99 -0.30 -1.47 16 16 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 17 C -0.15 -2.00 4.49 -26.69 -0.12 -2.12 16 18 C 0.51 7.63 8.03 -10.81 -0.09 7.55 16 19 O -0.54 -9.92 17.59 5.55 0.10 -9.82 16 20 N -0.63 -7.56 3.33 -180.25 -0.60 -8.17 16 21 C 0.10 0.90 10.96 59.84 0.66 1.56 16 22 C 0.11 1.13 6.91 -3.13 -0.02 1.11 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.01 0.18 6.08 -51.93 -0.32 -0.13 16 25 H 0.08 2.19 6.07 -51.92 -0.32 1.87 16 26 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 27 H 0.05 0.85 4.87 -51.93 -0.25 0.59 16 28 H 0.08 1.64 5.89 -51.93 -0.31 1.33 16 29 H 0.01 0.16 7.94 -51.93 -0.41 -0.25 16 30 H 0.08 1.30 5.59 -51.93 -0.29 1.01 16 31 H 0.03 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.11 1.45 6.80 -51.93 -0.35 1.10 16 33 H 0.10 1.39 7.10 -51.93 -0.37 1.02 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -30.15 295.46 -6.93 -37.08 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.84 Total: -1.98 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.44 Total: -1.49 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -1.05 Total: -44.13 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.10 Total: -9.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.15 -6.93 -37.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.579 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds