Wall clock time and date at job start Mon Mar 30 2020 03:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47475 * 2 1 4 4 C 1.50698 * 109.47479 * 239.99402 * 2 1 3 5 5 H 1.08000 * 119.99842 * 240.00825 * 4 2 1 6 6 C 1.37868 * 119.99993 * 59.99898 * 4 2 1 7 7 N 1.31520 * 120.00282 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00166 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46948 * 90.00436 * 8 6 4 10 10 H 1.48497 * 109.47286 * 210.00339 * 8 6 4 11 11 H 1.48497 * 109.47301 * 330.00574 * 8 6 4 12 12 N 1.46901 * 109.46567 * 119.99594 * 2 1 3 13 13 C 1.46900 * 110.99830 * 176.04973 * 12 2 1 14 14 C 1.46903 * 111.00029 * 299.99917 * 12 2 1 15 15 C 1.53003 * 109.47289 * 162.76293 * 14 12 2 16 16 H 1.09005 * 110.85229 * 309.51723 * 15 14 12 17 17 C 1.54624 * 110.96923 * 73.30760 * 15 14 12 18 18 C 1.51386 * 104.14683 * 142.94434 * 17 15 14 19 19 O 1.21284 * 124.93334 * 163.74527 * 18 17 15 20 20 N 1.34420 * 110.12344 * 343.74029 * 18 17 15 21 21 C 1.46496 * 124.34927 * 179.62022 * 20 18 17 22 22 C 1.46758 * 111.29896 * 359.59970 * 20 18 17 23 23 H 1.08997 * 109.47475 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47226 * 300.01103 * 1 2 3 25 25 H 1.09009 * 109.46634 * 60.00504 * 1 2 3 26 26 H 0.96996 * 120.00348 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46856 * 191.82901 * 13 12 2 28 28 H 1.09000 * 109.46906 * 311.82294 * 13 12 2 29 29 H 1.09000 * 109.47500 * 71.82853 * 13 12 2 30 30 H 1.08997 * 109.47257 * 42.76411 * 14 12 2 31 31 H 1.09003 * 109.47393 * 282.76213 * 14 12 2 32 32 H 1.09003 * 110.48723 * 261.63053 * 17 15 14 33 33 H 1.08994 * 110.49022 * 24.27526 * 17 15 14 34 34 H 1.09002 * 109.47087 * 269.97726 * 21 20 18 35 35 H 1.09002 * 109.47229 * 29.97510 * 21 20 18 36 36 H 1.08999 * 109.47289 * 149.98132 * 21 20 18 37 37 H 1.08998 * 110.24767 * 258.00985 * 22 20 18 38 38 H 1.09001 * 110.24514 * 136.01968 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8299 -2.6035 8 14 2.3228 -1.1199 -4.0077 9 1 1.3451 -2.1620 -4.4121 10 1 2.4876 -0.1407 -5.1118 11 1 3.6311 -1.7569 -3.7116 12 7 2.0196 -0.6924 1.1995 13 6 3.4850 -0.7944 1.1873 14 6 1.5485 -0.0262 2.4211 15 6 1.6973 -0.9771 3.6105 16 1 1.2532 -1.9477 3.3892 17 6 3.1817 -1.1274 4.0165 18 6 3.1448 -1.2167 5.5273 19 8 4.0554 -1.6159 6.2218 20 7 1.9563 -0.7890 5.9870 21 6 1.5830 -0.7505 7.4030 22 6 1.0808 -0.3653 4.8880 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 0.7097 1.1614 -3.4845 27 1 3.8076 -1.4852 1.9664 28 1 3.8154 -1.1624 0.2159 29 1 3.9192 0.1884 1.3705 30 1 0.5001 0.2481 2.3042 31 1 2.1414 0.8714 2.5972 32 1 3.6036 -2.0376 3.5902 33 1 3.7541 -0.2557 3.6995 34 1 1.1185 -1.6963 7.6822 35 1 2.4745 -0.5906 8.0096 36 1 0.8783 0.0639 7.5710 37 1 1.0653 0.7222 4.8159 38 1 0.0717 -0.7482 5.0405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687180710.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:14 Heat of formation + Delta-G solvation = -41.940447 kcal Electronic energy + Delta-G solvation = -17780.659889 eV Core-core repulsion = 15043.619957 eV Total energy + Delta-G solvation = -2737.039932 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48852 -38.97413 -37.34504 -35.11881 -33.56385 -30.94185 -29.83606 -28.02124 -27.33343 -26.23263 -24.40733 -21.93026 -21.04386 -20.55312 -18.28204 -17.81427 -17.30599 -16.92456 -16.34134 -15.96336 -15.71709 -15.10783 -14.77445 -14.63650 -14.20617 -14.13642 -13.57334 -13.32255 -13.27185 -13.05639 -12.98101 -12.86902 -12.50766 -12.37575 -12.16543 -12.01809 -11.80901 -11.69130 -11.52467 -10.80379 -10.73120 -10.45663 -9.71397 -8.87791 -8.08150 -6.18701 1.44199 1.45619 1.51045 1.54810 2.08866 2.44934 3.19534 3.27812 3.41949 3.64383 4.01793 4.12603 4.38162 4.47003 4.51647 4.59708 4.64831 4.71239 4.73999 4.78687 4.84292 4.86394 4.92861 5.11146 5.12008 5.22496 5.31955 5.36635 5.56517 5.58718 5.77276 5.87833 6.05526 6.32973 6.44067 6.81435 6.96829 7.11552 7.50389 8.97517 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049852 B = 0.005072 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.529289 B = 5519.481022 C = 5934.629203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.214 3.786 3 H -0.037 1.037 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.541 5.541 13 C 0.026 3.974 14 C 0.061 3.939 15 C -0.081 4.081 16 H 0.098 0.902 17 C -0.146 4.146 18 C 0.508 3.492 19 O -0.586 6.586 20 N -0.621 5.621 21 C 0.090 3.910 22 C 0.111 3.889 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.056 0.944 26 H 0.260 0.740 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.009 0.991 30 H 0.085 0.915 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -1.049 14.546 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 H -0.020 1.020 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.265 5.265 13 C -0.122 4.122 14 C -0.068 4.068 15 C -0.100 4.100 16 H 0.116 0.884 17 C -0.186 4.186 18 C 0.297 3.703 19 O -0.467 6.467 20 N -0.354 5.354 21 C -0.051 4.051 22 C -0.012 4.012 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.958 -1.597 14.853 15.066 hybrid contribution 0.711 0.619 -1.110 1.457 sum -1.246 -0.978 13.742 13.833 Atomic orbital electron populations 1.21686 0.97000 0.99403 0.99946 1.19045 0.92845 0.90160 0.87206 1.01973 1.21465 1.30859 1.12194 0.91079 0.92290 1.25648 0.95488 0.95748 1.01738 1.70010 1.37938 1.24138 1.23906 0.85600 0.78836 0.78245 0.79197 1.20234 1.21197 1.19471 1.62012 1.10022 1.52399 1.02079 1.22560 0.88151 0.99070 1.02384 1.22166 1.01404 0.93985 0.89209 1.22039 0.93746 1.00893 0.93315 0.88367 1.22652 0.99483 1.05283 0.91181 1.21420 0.81698 0.75489 0.91662 1.90661 1.41064 1.49731 1.65238 1.48371 1.15424 1.63206 1.08397 1.21723 1.01519 1.03385 0.78486 1.22276 0.94731 1.00572 0.83603 0.94888 0.94217 0.92516 0.93055 0.89987 0.92689 0.97240 0.89709 0.95342 0.87832 0.87927 0.91681 0.92044 0.88109 0.89580 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.80 71.98 0.63 -4.96 16 2 C 0.21 10.35 2.06 44.17 0.09 10.44 16 3 H -0.04 -2.02 8.14 -2.39 -0.02 -2.04 16 4 C -0.52 -27.61 7.77 25.60 0.20 -27.41 16 5 H 0.06 3.14 6.47 -2.91 -0.02 3.12 16 6 C 0.01 0.67 5.30 84.65 0.45 1.11 16 7 N -0.92 -51.82 11.32 21.44 0.24 -51.58 16 8 Si 0.95 43.01 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 N -0.54 -21.04 4.57 -901.45 -4.12 -25.15 16 13 C 0.03 0.97 8.29 127.69 1.06 2.03 16 14 C 0.06 1.81 4.40 86.30 0.38 2.19 16 15 C -0.08 -1.88 3.32 -9.74 -0.03 -1.91 16 16 H 0.10 2.37 8.14 -2.38 -0.02 2.36 16 17 C -0.15 -3.70 4.49 30.62 0.14 -3.57 16 18 C 0.51 14.33 8.03 87.93 0.71 15.03 16 19 O -0.59 -21.18 17.59 -3.04 -0.05 -21.23 16 20 N -0.62 -13.27 3.33 -842.78 -2.81 -16.08 16 21 C 0.09 1.43 10.96 127.77 1.40 2.83 16 22 C 0.11 1.95 6.91 86.83 0.60 2.55 16 23 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.52 6.08 -2.39 -0.01 1.51 16 25 H 0.06 2.93 6.07 -2.38 -0.01 2.91 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.08 2.50 4.87 -2.38 -0.01 2.49 16 28 H 0.05 2.27 5.89 -2.39 -0.01 2.26 16 29 H 0.01 0.33 7.94 -2.39 -0.02 0.31 16 30 H 0.08 2.48 5.59 -2.39 -0.01 2.46 16 31 H 0.03 0.85 7.66 -2.39 -0.02 0.83 16 32 H 0.10 2.67 6.80 -2.39 -0.02 2.66 16 33 H 0.10 2.62 7.10 -2.39 -0.02 2.60 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.13 7.92 -2.39 -0.02 1.11 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.35 7.89 -2.39 -0.02 1.33 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -65.44 295.46 1.95 -63.49 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.04 Total: 7.19 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.62 Total: -1.67 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -6.69 Total: -92.81 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.44 1.95 -63.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180710.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.552 kcal (2) G-P(sol) polarization free energy of solvation -65.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds