Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46697 * 2 1 4 4 C 1.50696 * 109.47136 * 119.99554 * 2 1 3 5 5 H 1.08007 * 120.00029 * 120.00094 * 4 2 1 6 6 C 1.37876 * 120.00354 * 300.00364 * 4 2 1 7 7 N 1.31515 * 120.00203 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99979 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46838 * 89.99878 * 8 6 4 10 10 H 1.48494 * 109.47701 * 210.00080 * 8 6 4 11 11 H 1.48503 * 109.46909 * 330.00427 * 8 6 4 12 12 N 1.46896 * 109.47338 * 239.99684 * 2 1 3 13 13 C 1.46898 * 111.00016 * 306.04670 * 12 2 1 14 14 C 1.46902 * 110.99849 * 70.00044 * 12 2 1 15 15 C 1.53003 * 109.47020 * 170.00403 * 14 12 2 16 16 H 1.08996 * 110.86298 * 51.20744 * 15 14 12 17 17 C 1.54479 * 111.13265 * 287.55669 * 15 14 12 18 18 C 1.51278 * 104.27090 * 217.27798 * 17 15 14 19 19 O 1.21283 * 124.94441 * 196.18142 * 18 17 15 20 20 N 1.34420 * 110.11582 * 15.91318 * 18 17 15 21 21 C 1.46499 * 124.35241 * 180.65858 * 20 18 17 22 22 C 1.46763 * 111.30130 * 0.63442 * 20 18 17 23 23 H 1.08996 * 109.47146 * 60.00021 * 1 2 3 24 24 H 1.09006 * 109.47173 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47337 * 299.99924 * 1 2 3 26 26 H 0.97006 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47151 * 183.95238 * 13 12 2 28 28 H 1.08995 * 109.47572 * 303.95072 * 13 12 2 29 29 H 1.08997 * 109.47130 * 63.95299 * 13 12 2 30 30 H 1.08997 * 109.47148 * 49.99953 * 14 12 2 31 31 H 1.09003 * 109.46882 * 289.99702 * 14 12 2 32 32 H 1.08996 * 110.54394 * 98.52834 * 17 15 14 33 33 H 1.08998 * 110.35295 * 335.93225 * 17 15 14 34 34 H 1.09010 * 109.46967 * 359.97438 * 21 20 18 35 35 H 1.09001 * 109.47256 * 119.96873 * 21 20 18 36 36 H 1.08994 * 109.47550 * 239.97683 * 21 20 18 37 37 H 1.09004 * 110.24523 * 101.98636 * 22 20 18 38 38 H 1.08995 * 110.25190 * 223.89391 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1381 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1993 13 6 1.4344 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4885 -0.5258 -3.5972 16 1 2.2726 -1.5916 -3.6719 17 6 4.0107 -0.2807 -3.5006 18 6 4.4420 -0.0452 -4.9314 19 8 5.5872 -0.0901 -5.3280 20 7 3.3706 0.2152 -5.7003 21 6 3.4306 0.4765 -7.1405 22 6 2.1329 0.2037 -4.9117 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9034 -0.5276 4.4376 27 1 1.8665 -2.5521 -2.1647 28 1 1.6467 -2.5988 -0.3990 29 1 0.3557 -1.9521 -1.4398 30 1 2.1025 1.1188 -2.2603 31 1 0.6814 0.1051 -2.6087 32 1 4.5137 -1.1560 -3.0897 33 1 4.2150 0.5993 -2.8908 34 1 4.4665 0.4258 -7.4762 35 1 2.8401 -0.2710 -7.6703 36 1 3.0301 1.4690 -7.3468 37 1 1.8099 1.2234 -4.7017 38 1 1.3509 -0.3368 -5.4449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687180712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -17.784288 kcal Electronic energy + Delta-G solvation = -17808.538884 eV Core-core repulsion = 15072.546441 eV Total energy + Delta-G solvation = -2735.992443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39986 -37.78667 -36.22095 -33.54495 -32.19737 -29.80656 -28.04867 -27.11837 -25.81569 -25.27928 -23.48184 -20.51894 -19.61108 -19.17994 -16.85704 -16.64233 -16.24315 -15.47584 -15.10099 -14.63137 -14.46138 -13.69718 -13.61097 -13.47347 -13.07280 -12.70560 -12.48928 -12.40087 -12.27543 -12.05808 -11.70527 -11.39131 -11.19522 -11.02691 -10.79494 -10.73387 -10.18124 -10.03808 -9.68266 -9.53281 -9.08773 -8.80067 -8.60368 -7.40554 -6.08184 -4.06371 2.64747 2.97873 3.23054 3.32887 3.36419 4.35897 4.37260 4.45224 4.70598 5.03627 5.06408 5.17103 5.21472 5.24362 5.39752 5.52429 5.58361 5.66487 5.84481 5.89714 6.01004 6.13777 6.19286 6.20635 6.22863 6.32784 6.45007 6.51247 6.66539 6.84147 7.05066 7.14001 7.60149 7.87974 8.01402 8.19925 8.63200 9.00178 9.53763 11.04960 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041025 B = 0.005401 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.348259 B = 5183.160667 C = 5342.094068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.181 3.819 3 H 0.039 0.961 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.521 5.521 13 C 0.029 3.971 14 C 0.061 3.939 15 C -0.095 4.095 16 H 0.092 0.908 17 C -0.136 4.136 18 C 0.515 3.485 19 O -0.541 6.541 20 N -0.628 5.628 21 C 0.094 3.906 22 C 0.107 3.893 23 H 0.027 0.973 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.017 0.983 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 2.456 -17.085 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.074 3.926 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.244 5.244 13 C -0.119 4.119 14 C -0.068 4.068 15 C -0.114 4.114 16 H 0.110 0.890 17 C -0.176 4.176 18 C 0.304 3.696 19 O -0.418 6.418 20 N -0.363 5.363 21 C -0.049 4.049 22 C -0.016 4.016 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.516 2.395 -17.131 17.480 hybrid contribution -1.754 0.959 0.135 2.004 sum -4.270 3.354 -16.996 17.842 Atomic orbital electron populations 1.22830 1.01724 1.01082 0.98853 1.19788 0.88672 0.95222 0.88960 0.94345 1.20926 1.31476 1.13804 0.87729 0.89958 1.24919 0.95904 0.96544 0.95862 1.69880 1.45679 1.40336 0.97877 0.86896 0.80506 0.83974 0.76936 1.20855 1.22449 1.19421 1.62132 1.58605 1.02407 1.01253 1.22342 0.95945 0.91577 1.02025 1.22075 0.96938 0.97640 0.90113 1.22176 0.94929 1.01027 0.93297 0.89005 1.22271 0.96356 1.05773 0.93164 1.21307 0.84337 0.74727 0.89193 1.90690 1.19810 1.52427 1.78908 1.48212 1.08560 1.71075 1.08481 1.21514 1.03479 1.00511 0.79354 1.22142 0.86384 1.01217 0.91875 0.95379 0.92421 0.93744 0.92637 0.93381 0.90124 0.96436 0.90968 0.94968 0.87591 0.87341 0.90108 0.92311 0.92309 0.91012 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 7.92 37.16 0.29 -3.51 16 2 C 0.18 4.01 1.90 -68.87 -0.13 3.88 16 3 H 0.04 0.89 6.99 -51.93 -0.36 0.53 16 4 C -0.50 -13.46 8.49 -34.44 -0.29 -13.75 16 5 H 0.08 2.43 7.37 -52.48 -0.39 2.04 16 6 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 7 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.20 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 12 N -0.52 -9.66 4.64 -236.29 -1.10 -10.75 16 13 C 0.03 0.50 8.47 60.06 0.51 1.01 16 14 C 0.06 0.88 3.83 -3.82 -0.01 0.86 16 15 C -0.10 -1.14 3.08 -89.06 -0.27 -1.41 16 16 H 0.09 1.08 6.30 -51.93 -0.33 0.76 16 17 C -0.14 -1.84 6.37 -26.82 -0.17 -2.01 16 18 C 0.52 7.55 8.03 -10.86 -0.09 7.46 16 19 O -0.54 -9.90 17.35 5.55 0.10 -9.80 16 20 N -0.63 -7.30 3.33 -180.29 -0.60 -7.90 16 21 C 0.09 0.84 11.14 59.85 0.67 1.51 16 22 C 0.11 1.05 6.92 -3.12 -0.02 1.03 16 23 H 0.03 0.49 6.91 -51.93 -0.36 0.13 16 24 H 0.06 1.16 6.42 -51.93 -0.33 0.83 16 25 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.05 0.69 6.33 -51.93 -0.33 0.37 16 28 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 29 H 0.02 0.28 6.46 -51.93 -0.34 -0.05 16 30 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 31 H 0.03 0.44 7.06 -51.93 -0.37 0.07 16 32 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.11 1.51 7.76 -51.93 -0.40 1.11 16 34 H 0.08 0.82 7.53 -51.92 -0.39 0.43 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 291.41 15.07 4.39 4.39 Total: -1.00 -31.47 291.41 -6.00 -37.47 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.80 Total: -1.38 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.38 Total: -3.08 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.92 Total: -44.81 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.10 Total: -9.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.20 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.47 -6.00 -37.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.684 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds