Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46697 * 2 1 4 4 C 1.50696 * 109.47136 * 119.99554 * 2 1 3 5 5 H 1.08007 * 120.00029 * 120.00094 * 4 2 1 6 6 C 1.37876 * 120.00354 * 300.00364 * 4 2 1 7 7 N 1.31515 * 120.00203 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99979 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46838 * 89.99878 * 8 6 4 10 10 H 1.48494 * 109.47701 * 210.00080 * 8 6 4 11 11 H 1.48503 * 109.46909 * 330.00427 * 8 6 4 12 12 N 1.46896 * 109.47338 * 239.99684 * 2 1 3 13 13 C 1.46898 * 111.00016 * 306.04670 * 12 2 1 14 14 C 1.46902 * 110.99849 * 70.00044 * 12 2 1 15 15 C 1.53003 * 109.47020 * 170.00403 * 14 12 2 16 16 H 1.08996 * 110.86298 * 51.20744 * 15 14 12 17 17 C 1.54479 * 111.13265 * 287.55669 * 15 14 12 18 18 C 1.51278 * 104.27090 * 217.27798 * 17 15 14 19 19 O 1.21283 * 124.94441 * 196.18142 * 18 17 15 20 20 N 1.34420 * 110.11582 * 15.91318 * 18 17 15 21 21 C 1.46499 * 124.35241 * 180.65858 * 20 18 17 22 22 C 1.46763 * 111.30130 * 0.63442 * 20 18 17 23 23 H 1.08996 * 109.47146 * 60.00021 * 1 2 3 24 24 H 1.09006 * 109.47173 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47337 * 299.99924 * 1 2 3 26 26 H 0.97006 * 119.99866 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47151 * 183.95238 * 13 12 2 28 28 H 1.08995 * 109.47572 * 303.95072 * 13 12 2 29 29 H 1.08997 * 109.47130 * 63.95299 * 13 12 2 30 30 H 1.08997 * 109.47148 * 49.99953 * 14 12 2 31 31 H 1.09003 * 109.46882 * 289.99702 * 14 12 2 32 32 H 1.08996 * 110.54394 * 98.52834 * 17 15 14 33 33 H 1.08998 * 110.35295 * 335.93225 * 17 15 14 34 34 H 1.09010 * 109.46967 * 359.97438 * 21 20 18 35 35 H 1.09001 * 109.47256 * 119.96873 * 21 20 18 36 36 H 1.08994 * 109.47550 * 239.97683 * 21 20 18 37 37 H 1.09004 * 110.24523 * 101.98636 * 22 20 18 38 38 H 1.08995 * 110.25190 * 223.89391 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1381 -0.8589 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1993 13 6 1.4344 -2.0355 -1.3077 14 6 1.7530 0.0972 -2.4090 15 6 2.4885 -0.5258 -3.5972 16 1 2.2726 -1.5916 -3.6719 17 6 4.0107 -0.2807 -3.5006 18 6 4.4420 -0.0452 -4.9314 19 8 5.5872 -0.0901 -5.3280 20 7 3.3706 0.2152 -5.7003 21 6 3.4306 0.4765 -7.1405 22 6 2.1329 0.2037 -4.9117 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9034 -0.5276 4.4376 27 1 1.8665 -2.5521 -2.1647 28 1 1.6467 -2.5988 -0.3990 29 1 0.3557 -1.9521 -1.4398 30 1 2.1025 1.1188 -2.2603 31 1 0.6814 0.1051 -2.6087 32 1 4.5137 -1.1560 -3.0897 33 1 4.2150 0.5993 -2.8908 34 1 4.4665 0.4258 -7.4762 35 1 2.8401 -0.2710 -7.6703 36 1 3.0301 1.4690 -7.3468 37 1 1.8099 1.2234 -4.7017 38 1 1.3509 -0.3368 -5.4449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687180712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = -41.447711 kcal Electronic energy + Delta-G solvation = -17809.565007 eV Core-core repulsion = 15072.546441 eV Total energy + Delta-G solvation = -2737.018566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44075 -39.20583 -37.42696 -35.00058 -33.80965 -31.38896 -29.17890 -28.05093 -27.15696 -26.98138 -24.81624 -21.79735 -20.80983 -20.46803 -18.64209 -17.81904 -17.33553 -16.96830 -16.30432 -16.13219 -15.76236 -15.08462 -14.88632 -14.62282 -14.34525 -14.11484 -14.01696 -13.64894 -13.25640 -13.18191 -13.09318 -12.87353 -12.64062 -12.38579 -12.20076 -12.02426 -11.86217 -11.51437 -11.32984 -10.99327 -10.84086 -10.70582 -9.69646 -8.82556 -8.22870 -6.24888 1.32837 1.38925 1.48703 1.53212 2.10485 2.35988 3.11813 3.20703 3.45037 3.70931 3.93144 4.11584 4.40748 4.48431 4.51039 4.54929 4.58843 4.63941 4.70340 4.71027 4.77496 4.80954 4.87757 4.88943 4.93644 5.07579 5.13453 5.26038 5.38682 5.51099 5.59597 5.69852 6.06741 6.11539 6.49575 6.78852 6.83268 7.13644 7.39942 8.94261 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041025 B = 0.005401 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.348259 B = 5183.160667 C = 5342.094068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.184 3.816 3 H 0.034 0.966 4 C -0.499 4.499 5 H 0.037 0.963 6 C 0.008 3.992 7 N -0.953 5.953 8 Si 0.950 3.050 9 H -0.269 1.269 10 H -0.304 1.304 11 H -0.245 1.245 12 N -0.541 5.541 13 C 0.035 3.965 14 C 0.064 3.936 15 C -0.085 4.085 16 H 0.097 0.903 17 C -0.136 4.136 18 C 0.508 3.492 19 O -0.589 6.589 20 N -0.622 5.622 21 C 0.088 3.912 22 C 0.112 3.888 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 3.965 -19.697 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 H 0.052 0.948 4 C -0.537 4.537 5 H 0.055 0.945 6 C -0.189 4.189 7 N -0.594 5.594 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.233 1.233 11 H -0.169 1.169 12 N -0.264 5.264 13 C -0.113 4.113 14 C -0.065 4.065 15 C -0.104 4.104 16 H 0.116 0.884 17 C -0.176 4.176 18 C 0.297 3.703 19 O -0.470 6.470 20 N -0.355 5.355 21 C -0.053 4.053 22 C -0.011 4.011 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.145 3.910 -19.798 20.826 hybrid contribution -0.891 0.407 0.877 1.315 sum -6.036 4.317 -18.921 20.324 Atomic orbital electron populations 1.22693 0.99747 1.01424 1.00061 1.19560 0.90044 0.94337 0.88508 0.94783 1.21236 1.29994 1.12354 0.90130 0.94495 1.25791 0.97639 0.99963 0.95462 1.70053 1.48147 1.42722 0.98527 0.85841 0.78931 0.80191 0.77222 1.19557 1.23253 1.16877 1.61967 1.59351 1.03179 1.01873 1.22264 0.96971 0.90790 1.01272 1.22133 0.98537 0.97119 0.88673 1.22074 0.92980 1.01575 0.93772 0.88444 1.22221 0.97883 1.04832 0.92686 1.21440 0.84314 0.74675 0.89831 1.90660 1.21793 1.54894 1.79690 1.48348 1.08293 1.69309 1.09527 1.21733 1.03138 1.02679 0.77782 1.22275 0.85966 1.02370 0.90444 0.91529 0.92625 0.94962 0.92789 0.90558 0.94054 0.94992 0.90842 0.92735 0.89071 0.88081 0.91863 0.89847 0.90015 0.89300 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.79 7.92 71.98 0.57 -6.22 16 2 C 0.18 7.88 1.90 44.17 0.08 7.96 16 3 H 0.03 1.50 6.99 -2.39 -0.02 1.49 16 4 C -0.50 -27.42 8.49 25.60 0.22 -27.20 16 5 H 0.04 2.30 7.37 -2.91 -0.02 2.28 16 6 C 0.01 0.45 5.45 84.65 0.46 0.91 16 7 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 8 Si 0.95 43.68 24.37 68.60 1.67 45.36 16 9 H -0.27 -11.77 6.87 99.48 0.68 -11.08 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.24 -10.20 6.53 99.48 0.65 -9.56 16 12 N -0.54 -19.14 4.64 -901.48 -4.19 -23.32 16 13 C 0.04 1.15 8.47 127.69 1.08 2.23 16 14 C 0.06 1.58 3.83 86.30 0.33 1.91 16 15 C -0.08 -1.75 3.08 -9.79 -0.03 -1.78 16 16 H 0.10 1.94 6.30 -2.39 -0.02 1.92 16 17 C -0.14 -3.56 6.37 30.53 0.19 -3.37 16 18 C 0.51 14.40 8.03 87.90 0.71 15.11 16 19 O -0.59 -21.82 17.35 -3.04 -0.05 -21.88 16 20 N -0.62 -12.55 3.33 -842.90 -2.81 -15.36 16 21 C 0.09 1.30 11.14 127.77 1.42 2.73 16 22 C 0.11 1.66 6.92 86.83 0.60 2.26 16 23 H 0.07 1.99 6.91 -2.39 -0.02 1.97 16 24 H 0.05 2.09 6.42 -2.38 -0.02 2.08 16 25 H 0.03 1.29 3.27 -2.39 -0.01 1.28 16 26 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 27 H 0.08 2.04 6.33 -2.39 -0.02 2.02 16 28 H 0.04 1.66 6.76 -2.39 -0.02 1.65 16 29 H 0.03 0.95 6.46 -2.39 -0.02 0.93 16 30 H 0.07 1.84 7.73 -2.39 -0.02 1.82 16 31 H 0.05 1.17 7.06 -2.39 -0.02 1.15 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.10 2.78 7.76 -2.39 -0.02 2.76 16 34 H 0.06 1.19 7.53 -2.38 -0.02 1.17 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.11 7.89 -2.38 -0.02 1.09 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.72 291.41 1.52 -70.20 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.96 Total: 9.40 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.64 Total: -5.45 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -6.70 Total: -97.63 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.67 Total: 45.36 kcal Total: -71.72 1.52 -70.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.753 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds