Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.50696 * 109.47408 * 239.99665 * 2 1 3 5 5 H 1.08003 * 120.00380 * 240.00096 * 4 2 1 6 6 C 1.37881 * 119.99748 * 60.00383 * 4 2 1 7 7 N 1.31516 * 119.99697 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00038 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46865 * 59.99926 * 8 6 4 10 10 H 1.48499 * 109.47039 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46880 * 299.99862 * 8 6 4 12 12 N 1.46907 * 109.46884 * 119.99820 * 2 1 3 13 13 C 1.46896 * 110.99869 * 58.95883 * 12 2 1 14 14 C 1.46894 * 111.00088 * 295.00170 * 12 2 1 15 15 C 1.53003 * 109.47091 * 288.32217 * 14 12 2 16 16 H 1.08996 * 110.85703 * 53.21331 * 15 14 12 17 17 C 1.54470 * 111.13726 * 289.55804 * 15 14 12 18 18 C 1.51281 * 104.27470 * 217.27615 * 17 15 14 19 19 O 1.21282 * 124.94400 * 196.18224 * 18 17 15 20 20 N 1.34424 * 110.11093 * 15.91245 * 18 17 15 21 21 C 1.46505 * 124.34599 * 180.65987 * 20 18 17 22 22 C 1.46765 * 111.30145 * 0.63819 * 20 18 17 23 23 H 1.08998 * 109.47376 * 60.00288 * 1 2 3 24 24 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47705 * 299.99733 * 1 2 3 26 26 H 0.97006 * 119.99438 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47330 * 290.08939 * 13 12 2 28 28 H 1.08996 * 109.47844 * 50.09065 * 13 12 2 29 29 H 1.09000 * 109.47222 * 170.09172 * 13 12 2 30 30 H 1.09005 * 109.47020 * 168.32443 * 14 12 2 31 31 H 1.08996 * 109.47526 * 48.32455 * 14 12 2 32 32 H 1.08997 * 110.54369 * 98.52311 * 17 15 14 33 33 H 1.09002 * 110.35648 * 335.93529 * 17 15 14 34 34 H 1.08992 * 109.47115 * 359.97438 * 21 20 18 35 35 H 1.09003 * 109.47110 * 119.97865 * 21 20 18 36 36 H 1.09002 * 109.46959 * 239.97281 * 21 20 18 37 37 H 1.08993 * 110.24115 * 101.98748 * 22 20 18 38 38 H 1.09005 * 110.24060 * 223.89534 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1189 -4.0075 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 6 2.4840 1.3169 2.5201 16 1 2.4064 1.9053 1.6059 17 6 3.9603 0.9931 2.8395 18 6 4.3909 2.1009 3.7755 19 8 5.5414 2.3774 4.0416 20 7 3.3130 2.7379 4.2647 21 6 3.3724 3.8717 5.1905 22 6 2.0690 2.1518 3.7518 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7083 1.1608 -3.4844 27 1 0.4558 -2.0745 1.4406 28 1 1.7235 -2.5633 0.2907 29 1 2.0410 -2.6172 2.0413 30 1 1.8360 -0.5881 3.2897 31 1 0.5908 0.2989 2.3781 32 1 4.5605 1.0074 1.9298 33 1 4.0377 0.0246 3.3336 34 1 4.4137 4.1063 5.4113 35 1 2.8934 4.7384 4.7349 36 1 2.8543 3.6141 6.1143 37 1 1.6150 1.5103 4.5069 38 1 1.3741 2.9389 3.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687180716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = -26.313038 kcal Electronic energy + Delta-G solvation = -17929.974827 eV Core-core repulsion = 15193.612550 eV Total energy + Delta-G solvation = -2736.362277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23479 -37.56151 -36.02109 -33.30216 -32.23426 -28.86781 -28.10765 -27.02917 -25.46268 -25.03604 -23.25556 -20.91590 -19.37698 -18.79252 -16.75455 -16.19421 -16.02738 -15.25022 -15.11061 -14.33856 -14.16568 -13.56846 -13.53984 -13.22953 -12.92953 -12.57228 -12.31801 -12.27231 -11.85423 -11.58828 -11.24037 -11.11692 -10.92586 -10.79430 -10.66064 -10.51641 -10.40686 -10.04687 -9.72373 -9.52326 -8.89441 -8.65203 -8.39079 -7.18474 -6.03208 -4.06582 2.78099 3.13186 3.31900 3.36476 3.39536 4.39172 4.59555 4.62966 4.93573 5.22583 5.26399 5.29213 5.35266 5.36910 5.61766 5.64740 5.73554 5.89369 5.98331 6.09319 6.16544 6.35465 6.37132 6.52892 6.60637 6.65411 6.80111 6.85719 7.09900 7.19480 7.44764 7.68723 7.80953 8.09513 8.33485 8.35114 8.56849 8.99074 9.58615 11.03864 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.005876 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.406859 B = 4764.042640 C = 4943.780582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.208 3.792 3 H 0.042 0.958 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.535 5.535 13 C 0.035 3.965 14 C 0.063 3.937 15 C -0.092 4.092 16 H 0.098 0.902 17 C -0.133 4.133 18 C 0.516 3.484 19 O -0.545 6.545 20 N -0.627 5.627 21 C 0.094 3.906 22 C 0.107 3.893 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.009 0.991 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 1.863 12.070 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.102 3.898 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.258 5.258 13 C -0.113 4.113 14 C -0.066 4.066 15 C -0.111 4.111 16 H 0.116 0.884 17 C -0.173 4.173 18 C 0.305 3.695 19 O -0.422 6.422 20 N -0.362 5.362 21 C -0.049 4.049 22 C -0.016 4.016 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.063 2.177 12.093 12.288 hybrid contribution -0.832 -0.307 -0.825 1.211 sum -0.896 1.870 11.268 11.458 Atomic orbital electron populations 1.22405 1.01013 0.99352 1.00467 1.19332 0.89607 0.94743 0.86087 0.94072 1.21085 1.30634 1.12519 0.89717 0.91966 1.24917 0.95200 0.95111 0.98994 1.69869 1.36983 1.23051 1.23512 0.86600 0.79290 0.79588 0.82162 1.20398 1.21442 1.20208 1.62305 1.59531 1.01876 1.02107 1.22210 0.96307 0.90814 1.01972 1.21994 0.96706 0.93465 0.94484 1.22128 0.94281 0.97181 0.97534 0.88392 1.22227 0.97495 0.97509 1.00081 1.21332 0.84368 0.83271 0.80542 1.90673 1.19578 1.69194 1.62773 1.48216 1.07888 1.33169 1.46944 1.21506 1.03389 0.87776 0.92180 1.22158 0.86097 0.97235 0.96126 0.89395 0.95220 0.97246 0.92967 0.96842 0.90366 0.93985 0.92142 0.94379 0.87493 0.87955 0.90193 0.92262 0.92408 0.91284 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.31 37.15 0.31 -3.63 16 2 C 0.21 4.87 2.24 -68.87 -0.15 4.72 16 3 H 0.04 1.05 6.45 -51.93 -0.34 0.72 16 4 C -0.50 -13.11 7.80 -34.44 -0.27 -13.38 16 5 H 0.06 1.64 6.82 -52.48 -0.36 1.28 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -10.44 4.61 -236.29 -1.09 -11.53 16 13 C 0.04 0.65 8.65 60.06 0.52 1.17 16 14 C 0.06 0.98 4.13 -3.83 -0.02 0.97 16 15 C -0.09 -1.36 3.14 -89.07 -0.28 -1.64 16 16 H 0.10 1.67 6.54 -51.93 -0.34 1.33 16 17 C -0.13 -2.03 6.33 -26.83 -0.17 -2.20 16 18 C 0.52 8.36 8.03 -10.86 -0.09 8.28 16 19 O -0.54 -10.65 17.35 5.56 0.10 -10.56 16 20 N -0.63 -8.36 3.33 -180.28 -0.60 -8.96 16 21 C 0.09 0.98 11.14 59.85 0.67 1.65 16 22 C 0.11 1.28 6.92 -3.12 -0.02 1.26 16 23 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 24 H 0.03 0.66 6.62 -51.93 -0.34 0.31 16 25 H 0.01 0.18 6.30 -51.93 -0.33 -0.15 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.01 0.23 6.85 -51.93 -0.36 -0.12 16 28 H 0.08 1.57 6.28 -51.93 -0.33 1.24 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 31 H 0.04 0.61 5.98 -51.93 -0.31 0.30 16 32 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.10 1.47 7.79 -51.93 -0.40 1.06 16 34 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -29.61 297.45 -6.97 -36.59 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.87 Total: -0.48 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.40 Total: -1.34 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -1.06 Total: -44.59 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.10 Total: -10.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.61 -6.97 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.273 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds