Wall clock time and date at job start Mon Mar 30 2020 03:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47249 * 2 1 4 4 C 1.50696 * 109.47408 * 239.99665 * 2 1 3 5 5 H 1.08003 * 120.00380 * 240.00096 * 4 2 1 6 6 C 1.37881 * 119.99748 * 60.00383 * 4 2 1 7 7 N 1.31516 * 119.99697 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00038 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46865 * 59.99926 * 8 6 4 10 10 H 1.48499 * 109.47039 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46880 * 299.99862 * 8 6 4 12 12 N 1.46907 * 109.46884 * 119.99820 * 2 1 3 13 13 C 1.46896 * 110.99869 * 58.95883 * 12 2 1 14 14 C 1.46894 * 111.00088 * 295.00170 * 12 2 1 15 15 C 1.53003 * 109.47091 * 288.32217 * 14 12 2 16 16 H 1.08996 * 110.85703 * 53.21331 * 15 14 12 17 17 C 1.54470 * 111.13726 * 289.55804 * 15 14 12 18 18 C 1.51281 * 104.27470 * 217.27615 * 17 15 14 19 19 O 1.21282 * 124.94400 * 196.18224 * 18 17 15 20 20 N 1.34424 * 110.11093 * 15.91245 * 18 17 15 21 21 C 1.46505 * 124.34599 * 180.65987 * 20 18 17 22 22 C 1.46765 * 111.30145 * 0.63819 * 20 18 17 23 23 H 1.08998 * 109.47376 * 60.00288 * 1 2 3 24 24 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47705 * 299.99733 * 1 2 3 26 26 H 0.97006 * 119.99438 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47330 * 290.08939 * 13 12 2 28 28 H 1.08996 * 109.47844 * 50.09065 * 13 12 2 29 29 H 1.09000 * 109.47222 * 170.09172 * 13 12 2 30 30 H 1.09005 * 109.47020 * 168.32443 * 14 12 2 31 31 H 1.08996 * 109.47526 * 48.32455 * 14 12 2 32 32 H 1.08997 * 110.54369 * 98.52311 * 17 15 14 33 33 H 1.09002 * 110.35648 * 335.93529 * 17 15 14 34 34 H 1.08992 * 109.47115 * 359.97438 * 21 20 18 35 35 H 1.09003 * 109.47110 * 119.97865 * 21 20 18 36 36 H 1.09002 * 109.46959 * 239.97281 * 21 20 18 37 37 H 1.08993 * 110.24115 * 101.98748 * 22 20 18 38 38 H 1.09005 * 110.24060 * 223.89534 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1189 -4.0075 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0391 2.4181 15 6 2.4840 1.3169 2.5201 16 1 2.4064 1.9053 1.6059 17 6 3.9603 0.9931 2.8395 18 6 4.3909 2.1009 3.7755 19 8 5.5414 2.3774 4.0416 20 7 3.3130 2.7379 4.2647 21 6 3.3724 3.8717 5.1905 22 6 2.0690 2.1518 3.7518 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7083 1.1608 -3.4844 27 1 0.4558 -2.0745 1.4406 28 1 1.7235 -2.5633 0.2907 29 1 2.0410 -2.6172 2.0413 30 1 1.8360 -0.5881 3.2897 31 1 0.5908 0.2989 2.3781 32 1 4.5605 1.0074 1.9298 33 1 4.0377 0.0246 3.3336 34 1 4.4137 4.1063 5.4113 35 1 2.8934 4.7384 4.7349 36 1 2.8543 3.6141 6.1143 37 1 1.6150 1.5103 4.5069 38 1 1.3741 2.9389 3.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687180716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:22 Heat of formation + Delta-G solvation = -46.220587 kcal Electronic energy + Delta-G solvation = -17930.838083 eV Core-core repulsion = 15193.612550 eV Total energy + Delta-G solvation = -2737.225533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42908 -39.08249 -37.35686 -34.91319 -33.72000 -30.60792 -29.38665 -28.08101 -27.25324 -26.42505 -24.78867 -22.26931 -20.55890 -20.35744 -18.30193 -17.67842 -17.25267 -16.95126 -16.31379 -15.97683 -15.66159 -14.95731 -14.69410 -14.58140 -14.30654 -14.19624 -13.51084 -13.26752 -13.22737 -13.12349 -12.84803 -12.67158 -12.58510 -12.45289 -12.27389 -12.01443 -11.96445 -11.79577 -11.35341 -10.83204 -10.79206 -10.41449 -9.70030 -8.72920 -8.06670 -6.15341 1.44700 1.45954 1.52737 1.53073 2.10971 2.46085 3.23294 3.32552 3.47336 3.77026 3.97328 4.12672 4.41215 4.53374 4.60141 4.65868 4.71731 4.74068 4.75511 4.78721 4.86391 4.91190 4.95191 5.04387 5.12739 5.24165 5.30949 5.35638 5.58253 5.64233 5.78819 5.89238 6.06221 6.29365 6.56773 6.85486 6.99669 7.13469 7.53603 8.98870 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.005876 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.406859 B = 4764.042640 C = 4943.780582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.951 3.049 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.546 5.546 13 C 0.038 3.962 14 C 0.066 3.934 15 C -0.088 4.088 16 H 0.068 0.932 17 C -0.128 4.128 18 C 0.509 3.491 19 O -0.587 6.587 20 N -0.622 5.622 21 C 0.088 3.912 22 C 0.114 3.886 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.034 0.966 26 H 0.259 0.741 27 H 0.019 0.981 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 1.411 13.710 13.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.107 3.893 3 H 0.032 0.968 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.270 5.270 13 C -0.110 4.110 14 C -0.063 4.063 15 C -0.108 4.108 16 H 0.086 0.914 17 C -0.168 4.168 18 C 0.298 3.702 19 O -0.469 6.469 20 N -0.355 5.355 21 C -0.053 4.053 22 C -0.008 4.008 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.028 1.725 13.754 13.900 hybrid contribution -0.558 -0.156 -1.278 1.403 sum -1.585 1.569 12.476 12.674 Atomic orbital electron populations 1.22203 1.00489 0.99074 1.00152 1.19048 0.89790 0.93344 0.87076 0.96783 1.21422 1.30218 1.12316 0.91175 0.92663 1.25604 0.95580 0.95826 1.01588 1.69995 1.38030 1.24184 1.23806 0.85724 0.78591 0.78818 0.79142 1.19700 1.21314 1.20206 1.62184 1.59906 1.02602 1.02267 1.22192 0.97029 0.90030 1.01735 1.22075 0.96876 0.93777 0.93551 1.21993 0.93881 0.97055 0.97835 0.91375 1.22146 0.97522 0.98086 0.99095 1.21436 0.84363 0.83663 0.80714 1.90645 1.21301 1.70524 1.64423 1.48350 1.07504 1.33184 1.46449 1.21741 1.03235 0.87430 0.92926 1.22235 0.85536 0.97754 0.95324 0.92465 0.95292 0.94739 0.93189 0.96267 0.92877 0.90963 0.89175 0.93974 0.89864 0.86714 0.91587 0.90459 0.89548 0.88313 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.18 8.31 71.98 0.60 -6.58 16 2 C 0.21 10.06 2.24 44.16 0.10 10.15 16 3 H 0.01 0.75 6.45 -2.39 -0.02 0.73 16 4 C -0.51 -27.13 7.80 25.60 0.20 -26.93 16 5 H 0.06 2.94 6.82 -2.91 -0.02 2.92 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -51.70 11.32 21.45 0.24 -51.46 16 8 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.55 -20.65 4.61 -901.49 -4.15 -24.80 16 13 C 0.04 1.32 8.65 127.69 1.10 2.43 16 14 C 0.07 1.88 4.13 86.31 0.36 2.23 16 15 C -0.09 -2.47 3.14 -9.79 -0.03 -2.50 16 16 H 0.07 2.34 6.54 -2.39 -0.02 2.32 16 17 C -0.13 -3.84 6.33 30.53 0.19 -3.65 16 18 C 0.51 16.16 8.03 87.90 0.71 16.87 16 19 O -0.59 -23.21 17.35 -3.03 -0.05 -23.26 16 20 N -0.62 -15.14 3.33 -842.88 -2.81 -17.94 16 21 C 0.09 1.60 11.14 127.77 1.42 3.03 16 22 C 0.11 2.33 6.92 86.83 0.60 2.93 16 23 H 0.06 2.94 6.07 -2.39 -0.01 2.93 16 24 H 0.03 1.26 6.62 -2.39 -0.02 1.24 16 25 H 0.03 1.33 6.30 -2.39 -0.02 1.31 16 26 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 27 H 0.02 0.63 6.85 -2.39 -0.02 0.61 16 28 H 0.05 2.09 6.28 -2.39 -0.02 2.07 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.10 7.85 -2.38 -0.02 2.08 16 31 H 0.04 1.20 5.98 -2.39 -0.01 1.19 16 32 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 33 H 0.11 3.10 7.79 -2.39 -0.02 3.08 16 34 H 0.07 1.42 7.53 -2.39 -0.02 1.40 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.54 7.89 -2.39 -0.02 1.52 16 38 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -64.91 297.45 1.99 -62.92 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.04 Total: 10.16 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.70 Total: -0.90 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -6.72 Total: -94.20 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.91 1.99 -62.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687180716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.696 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds