Wall clock time and date at job start Mon Mar 30 2020 03:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46927 * 2 1 4 4 C 1.36937 * 120.00404 * 276.33681 * 3 2 1 5 5 H 1.08005 * 120.00107 * 33.70912 * 4 3 2 6 6 C 1.38807 * 120.00338 * 213.71472 * 4 3 2 7 7 N 1.31620 * 119.99973 * 23.31537 * 6 4 3 8 8 Si 1.86800 * 120.00069 * 203.31862 * 6 4 3 9 9 H 1.48504 * 109.47412 * 59.99563 * 8 6 4 10 10 H 1.48504 * 109.47575 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47330 * 299.99512 * 8 6 4 12 12 C 1.46501 * 119.99947 * 96.33363 * 3 2 1 13 13 C 1.52994 * 109.47671 * 270.00150 * 12 3 2 14 14 H 1.09003 * 110.88761 * 308.90293 * 13 12 3 15 15 C 1.54765 * 111.01225 * 185.00034 * 13 12 3 16 16 C 1.51689 * 102.47367 * 217.98533 * 15 13 12 17 17 C 1.50703 * 125.76653 * 195.27811 * 16 15 13 18 18 C 1.53001 * 109.46738 * 175.00434 * 17 16 15 19 19 C 1.52999 * 109.46936 * 295.00083 * 17 16 15 20 20 N 1.27642 * 108.46191 * 15.54742 * 16 15 13 21 21 O 1.41376 * 113.17320 * 359.87998 * 20 16 15 22 22 H 1.09003 * 109.46627 * 299.99307 * 1 2 3 23 23 H 1.08994 * 109.47186 * 59.99695 * 1 2 3 24 24 H 1.08999 * 109.46401 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46627 * 240.00693 * 2 1 3 26 26 H 1.08992 * 109.47573 * 119.99938 * 2 1 3 27 27 H 0.97003 * 119.99519 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47199 * 149.99706 * 12 3 2 29 29 H 1.09002 * 109.46936 * 30.00219 * 12 3 2 30 30 H 1.09000 * 110.80704 * 99.74770 * 15 13 12 31 31 H 1.08994 * 110.97567 * 336.31070 * 15 13 12 32 32 H 1.08996 * 109.47284 * 55.00311 * 17 16 15 33 33 H 1.08996 * 109.47270 * 299.99294 * 18 17 16 34 34 H 1.09001 * 109.47390 * 60.00629 * 18 17 16 35 35 H 1.09011 * 109.46599 * 180.02562 * 18 17 16 36 36 H 1.09003 * 109.47368 * 60.00408 * 19 17 16 37 37 H 1.09011 * 109.46965 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.47881 * 299.99793 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1232 2.0705 -1.1786 5 1 1.4130 1.8933 -1.9728 6 6 3.1421 2.9968 -1.3527 7 7 4.2428 2.9068 -0.6366 8 14 2.9514 4.3712 -2.6033 9 1 1.7697 5.1994 -2.2524 10 1 4.1699 5.2200 -2.5960 11 1 2.7626 3.7873 -3.9556 12 6 2.3944 2.0252 1.2610 13 6 1.1738 2.7272 1.8592 14 1 0.6966 3.3728 1.1219 15 6 1.5588 3.5245 3.1286 16 6 0.3603 3.3020 4.0313 17 6 0.0302 4.0962 5.2689 18 6 -1.3214 3.6400 5.8221 19 6 1.1153 3.8711 6.3237 20 7 -0.3184 2.3249 3.5688 21 8 0.2364 1.7695 2.3929 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 4.9547 3.5544 -0.7580 28 1 3.1799 2.7577 1.0748 29 1 2.7586 1.2716 1.9593 30 1 1.6794 4.5832 2.8992 31 1 2.4649 3.1225 3.5819 32 1 -0.0188 5.1558 5.0183 33 1 -2.0944 3.8004 5.0706 34 1 -1.2724 2.5803 6.0728 35 1 -1.5604 4.2148 6.7170 36 1 2.0782 4.1961 5.9296 37 1 0.8767 4.4460 7.2187 38 1 1.1642 2.8115 6.5745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687804217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:18 Heat of formation + Delta-G solvation = 23.682464 kcal Electronic energy + Delta-G solvation = -18036.952004 eV Core-core repulsion = 15302.757695 eV Total energy + Delta-G solvation = -2734.194309 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69169 -36.21192 -35.31426 -31.85529 -31.09777 -31.03867 -28.57481 -27.27367 -25.60958 -23.63465 -22.85908 -21.04755 -20.14178 -18.79963 -16.73747 -15.89262 -15.55361 -14.91568 -14.75812 -14.11099 -13.70757 -13.64864 -13.33392 -13.06283 -12.51233 -12.36040 -12.19971 -11.98371 -11.79223 -11.45799 -11.26140 -11.17733 -11.11076 -10.83043 -10.67294 -10.61900 -10.35869 -10.29390 -9.97623 -9.81140 -9.55573 -8.78484 -8.51288 -6.62809 -5.82562 -3.35368 2.25105 3.34656 3.40446 3.43554 3.64421 4.35534 4.47243 4.80649 4.94340 5.10733 5.14173 5.30519 5.33080 5.50627 5.54549 5.69151 5.73495 5.74399 5.81303 6.04973 6.11483 6.18327 6.25687 6.31342 6.32737 6.46508 6.57174 6.68182 6.84365 6.97263 7.07455 7.40449 7.52446 7.80655 8.02409 8.46762 9.15924 9.80208 10.38105 11.17969 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.007078 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.137401 B = 3955.108987 C = 4536.884029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.146 3.854 3 N -0.582 5.582 4 C -0.252 4.252 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.152 3.848 13 C 0.027 3.973 14 H 0.080 0.920 15 C -0.146 4.146 16 C 0.071 3.929 17 C -0.025 4.025 18 C -0.143 4.143 19 C -0.143 4.143 20 N -0.303 5.303 21 O -0.188 6.188 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.256 0.744 28 H 0.116 0.884 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 3.367 11.907 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 N -0.301 5.301 4 C -0.382 4.382 5 H 0.080 0.920 6 C -0.194 4.194 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.024 3.976 13 C -0.033 4.033 14 H 0.098 0.902 15 C -0.186 4.186 16 C -0.123 4.123 17 C -0.044 4.044 18 C -0.200 4.200 19 C -0.201 4.201 20 N -0.043 5.043 21 O -0.208 6.208 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.134 0.866 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.986 2.579 11.872 13.543 hybrid contribution 0.657 1.377 -0.956 1.801 sum -5.328 3.956 10.916 12.775 Atomic orbital electron populations 1.22385 0.99558 0.98959 1.02219 1.20813 0.92224 0.86621 0.98366 1.43755 1.75253 1.08726 1.02384 1.19069 1.07489 1.17900 0.93713 0.91965 1.25071 0.94139 1.01613 0.98608 1.69953 1.04413 1.35910 1.43292 0.86455 0.76972 0.82444 0.81533 1.21032 1.21567 1.20632 1.21180 0.92663 0.97684 0.86107 1.24868 0.93907 0.91155 0.93399 0.90215 1.23107 0.98026 1.03226 0.94254 1.26096 0.93790 0.95692 0.96742 1.19757 0.96630 0.98282 0.89731 1.21755 0.95591 1.02021 1.00676 1.21796 0.98092 1.02480 0.97765 1.77637 1.18557 1.08814 0.99280 1.91235 1.58247 1.38753 1.32562 0.91363 0.93834 0.94941 0.94255 0.94762 0.93445 0.86643 0.94904 0.89182 0.88711 0.88949 0.92218 0.91918 0.92260 0.91937 0.91670 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 10.19 37.16 0.38 -3.21 16 2 C 0.15 3.33 6.44 -4.04 -0.03 3.30 16 3 N -0.58 -14.82 2.47 -173.24 -0.43 -15.25 16 4 C -0.25 -6.91 9.47 -15.06 -0.14 -7.06 16 5 H 0.06 1.72 7.93 -52.48 -0.42 1.31 16 6 C 0.00 0.13 4.94 -17.43 -0.09 0.04 16 7 N -0.89 -25.06 11.32 55.49 0.63 -24.43 16 8 Si 0.90 21.32 29.61 -169.99 -5.03 16.29 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.15 3.58 5.03 -4.04 -0.02 3.56 16 13 C 0.03 0.57 4.07 -25.80 -0.10 0.47 16 14 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 15 C -0.15 -2.40 6.61 -26.47 -0.18 -2.58 16 16 C 0.07 1.09 6.42 -78.57 -0.50 0.59 16 17 C -0.02 -0.27 3.37 -91.77 -0.31 -0.58 16 18 C -0.14 -1.51 8.67 37.16 0.32 -1.19 16 19 C -0.14 -1.33 9.17 37.16 0.34 -0.99 16 20 N -0.30 -5.66 11.72 35.65 0.42 -5.24 16 21 O -0.19 -4.04 9.53 -11.36 -0.11 -4.15 16 22 H 0.07 1.50 5.22 -51.93 -0.27 1.23 16 23 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.03 0.75 7.82 -51.93 -0.41 0.34 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.12 2.96 5.31 -51.93 -0.28 2.68 16 29 H 0.03 0.76 7.85 -51.93 -0.41 0.35 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.09 1.48 7.92 -51.93 -0.41 1.07 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -29.75 308.36 -6.60 -36.34 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.39 Total: -0.57 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.33 Total: -7.65 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.62 Total: -44.92 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.11 Total: -4.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.75 -6.60 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.025 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds