Wall clock time and date at job start Mon Mar 30 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46927 * 2 1 4 4 C 1.36937 * 120.00404 * 276.33681 * 3 2 1 5 5 H 1.08005 * 120.00107 * 33.70912 * 4 3 2 6 6 C 1.38807 * 120.00338 * 213.71472 * 4 3 2 7 7 N 1.31620 * 119.99973 * 23.31537 * 6 4 3 8 8 Si 1.86800 * 120.00069 * 203.31862 * 6 4 3 9 9 H 1.48504 * 109.47412 * 59.99563 * 8 6 4 10 10 H 1.48504 * 109.47575 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47330 * 299.99512 * 8 6 4 12 12 C 1.46501 * 119.99947 * 96.33363 * 3 2 1 13 13 C 1.52994 * 109.47671 * 270.00150 * 12 3 2 14 14 H 1.09003 * 110.88761 * 308.90293 * 13 12 3 15 15 C 1.54765 * 111.01225 * 185.00034 * 13 12 3 16 16 C 1.51689 * 102.47367 * 217.98533 * 15 13 12 17 17 C 1.50703 * 125.76653 * 195.27811 * 16 15 13 18 18 C 1.53001 * 109.46738 * 175.00434 * 17 16 15 19 19 C 1.52999 * 109.46936 * 295.00083 * 17 16 15 20 20 N 1.27642 * 108.46191 * 15.54742 * 16 15 13 21 21 O 1.41376 * 113.17320 * 359.87998 * 20 16 15 22 22 H 1.09003 * 109.46627 * 299.99307 * 1 2 3 23 23 H 1.08994 * 109.47186 * 59.99695 * 1 2 3 24 24 H 1.08999 * 109.46401 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46627 * 240.00693 * 2 1 3 26 26 H 1.08992 * 109.47573 * 119.99938 * 2 1 3 27 27 H 0.97003 * 119.99519 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47199 * 149.99706 * 12 3 2 29 29 H 1.09002 * 109.46936 * 30.00219 * 12 3 2 30 30 H 1.09000 * 110.80704 * 99.74770 * 15 13 12 31 31 H 1.08994 * 110.97567 * 336.31070 * 15 13 12 32 32 H 1.08996 * 109.47284 * 55.00311 * 17 16 15 33 33 H 1.08996 * 109.47270 * 299.99294 * 18 17 16 34 34 H 1.09001 * 109.47390 * 60.00629 * 18 17 16 35 35 H 1.09011 * 109.46599 * 180.02562 * 18 17 16 36 36 H 1.09003 * 109.47368 * 60.00408 * 19 17 16 37 37 H 1.09011 * 109.46965 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.47881 * 299.99793 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1232 2.0705 -1.1786 5 1 1.4130 1.8933 -1.9728 6 6 3.1421 2.9968 -1.3527 7 7 4.2428 2.9068 -0.6366 8 14 2.9514 4.3712 -2.6033 9 1 1.7697 5.1994 -2.2524 10 1 4.1699 5.2200 -2.5960 11 1 2.7626 3.7873 -3.9556 12 6 2.3944 2.0252 1.2610 13 6 1.1738 2.7272 1.8592 14 1 0.6966 3.3728 1.1219 15 6 1.5588 3.5245 3.1286 16 6 0.3603 3.3020 4.0313 17 6 0.0302 4.0962 5.2689 18 6 -1.3214 3.6400 5.8221 19 6 1.1153 3.8711 6.3237 20 7 -0.3184 2.3249 3.5688 21 8 0.2364 1.7695 2.3929 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 4.9547 3.5544 -0.7580 28 1 3.1799 2.7577 1.0748 29 1 2.7586 1.2716 1.9593 30 1 1.6794 4.5832 2.8992 31 1 2.4649 3.1225 3.5819 32 1 -0.0188 5.1558 5.0183 33 1 -2.0944 3.8004 5.0706 34 1 -1.2724 2.5803 6.0728 35 1 -1.5604 4.2148 6.7170 36 1 2.0782 4.1961 5.9296 37 1 0.8767 4.4460 7.2187 38 1 1.1642 2.8115 6.5745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687804217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:17 Heat of formation + Delta-G solvation = 6.809889 kcal Electronic energy + Delta-G solvation = -18037.683654 eV Core-core repulsion = 15302.757695 eV Total energy + Delta-G solvation = -2734.925959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12180 -37.89362 -36.59014 -33.85406 -32.67209 -32.40542 -30.35147 -28.22945 -27.31615 -25.44823 -23.94113 -22.69499 -22.01331 -20.03699 -18.68063 -17.30432 -17.12846 -16.62256 -16.04515 -15.57633 -15.50147 -15.13748 -14.67417 -14.32560 -14.11434 -13.85439 -13.55202 -13.30927 -13.24256 -12.95421 -12.68420 -12.62266 -12.46317 -12.31013 -12.18420 -12.09407 -11.97318 -11.89113 -11.80954 -11.48075 -11.24312 -10.56635 -10.28799 -8.65487 -7.87812 -5.45863 0.97665 1.45240 1.47112 1.54736 2.23180 2.48444 3.08504 3.21961 3.54429 3.61687 3.91861 4.03214 4.16609 4.22695 4.34242 4.42953 4.49101 4.68122 4.73250 4.82843 4.83420 4.89357 4.90161 4.99076 5.00287 5.07854 5.17091 5.26559 5.28181 5.39647 5.43303 5.54667 5.65013 5.70712 6.40668 6.60016 7.11030 7.79804 8.34257 9.09637 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.007078 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.137401 B = 3955.108987 C = 4536.884029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.052 0.948 6 C -0.035 4.035 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.278 1.278 12 C 0.158 3.842 13 C 0.032 3.968 14 H 0.053 0.947 15 C -0.142 4.142 16 C 0.097 3.903 17 C -0.025 4.025 18 C -0.141 4.141 19 C -0.140 4.140 20 N -0.334 5.334 21 O -0.219 6.219 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.256 0.744 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.603 4.845 13.372 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.070 0.930 6 C -0.232 4.232 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.203 1.203 12 C 0.030 3.970 13 C -0.029 4.029 14 H 0.071 0.929 15 C -0.182 4.182 16 C -0.097 4.097 17 C -0.045 4.045 18 C -0.198 4.198 19 C -0.198 4.198 20 N -0.077 5.077 21 O -0.236 6.236 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.047 0.953 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.344 4.034 13.329 15.303 hybrid contribution 0.766 0.909 -1.321 1.777 sum -5.578 4.943 12.007 14.132 Atomic orbital electron populations 1.22206 0.97917 1.00438 1.01048 1.20893 0.93460 0.85673 0.98243 1.43979 1.75671 1.09694 1.02549 1.19203 1.07446 1.18871 0.94357 0.92984 1.25716 0.93719 1.03195 1.00557 1.70061 1.04883 1.36485 1.44630 0.85502 0.76867 0.79676 0.79415 1.20747 1.21125 1.20337 1.21023 0.93381 0.97023 0.85527 1.24450 0.92607 0.91081 0.94732 0.92943 1.23094 0.98823 1.03903 0.92394 1.26856 0.91921 0.93965 0.96946 1.20082 0.97535 0.98755 0.88082 1.21754 0.94850 1.01682 1.01557 1.21810 0.97494 1.02371 0.98151 1.77691 1.19825 1.11138 0.99041 1.91203 1.58581 1.39612 1.34183 0.92413 0.94999 0.92082 0.94901 0.94212 0.93446 0.88591 0.95277 0.86903 0.87537 0.86306 0.93570 0.93362 0.89140 0.91555 0.88804 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.58 10.19 71.98 0.73 -5.85 16 2 C 0.14 6.63 6.44 86.38 0.56 7.19 16 3 N -0.60 -31.21 2.47 -702.00 -1.73 -32.95 16 4 C -0.27 -15.04 9.47 84.03 0.80 -14.24 16 5 H 0.05 2.95 7.93 -2.91 -0.02 2.93 16 6 C -0.03 -1.91 4.94 84.86 0.42 -1.49 16 7 N -0.92 -51.95 11.32 21.65 0.25 -51.71 16 8 Si 0.96 43.99 29.61 68.60 2.03 46.02 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.16 7.61 5.03 86.38 0.43 8.04 16 13 C 0.03 1.36 4.07 31.19 0.13 1.49 16 14 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 15 C -0.14 -4.49 6.61 30.77 0.20 -4.29 16 16 C 0.10 2.82 6.42 46.90 0.30 3.12 16 17 C -0.03 -0.48 3.37 -11.54 -0.04 -0.52 16 18 C -0.14 -2.62 8.67 71.98 0.62 -1.99 16 19 C -0.14 -2.10 9.17 71.98 0.66 -1.44 16 20 N -0.33 -12.33 11.72 -40.61 -0.48 -12.81 16 21 O -0.22 -9.57 9.53 -38.28 -0.36 -9.93 16 22 H 0.06 2.57 5.22 -2.39 -0.01 2.56 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.03 1.53 8.09 -2.39 -0.02 1.52 16 26 H 0.04 1.77 7.82 -2.39 -0.02 1.75 16 27 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.10 5.03 5.31 -2.38 -0.01 5.01 16 29 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16 30 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.11 3.17 7.92 -2.39 -0.02 3.15 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -65.00 308.36 5.53 -59.47 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.01 Total: 11.88 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 4.82 Total: -9.98 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -1.96 Total: -97.46 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.36 Total: -9.93 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -65.00 5.53 -59.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.279 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds