Wall clock time and date at job start Mon Mar 30 2020 03:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46493 * 109.47094 * 2 1 4 4 C 1.47062 * 125.40573 * 90.00313 * 3 2 1 5 5 C 1.54102 * 103.98842 * 180.02562 * 4 3 2 6 6 N 1.47047 * 103.86597 * 359.92478 * 5 4 3 7 7 C 1.46495 * 125.41333 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47240 * 90.00390 * 7 6 5 9 9 C 1.53000 * 109.47144 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46960 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47290 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00253 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99762 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00193 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47643 * 59.99569 * 15 13 11 17 17 H 1.48497 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46982 * 299.99465 * 15 13 11 19 19 C 1.33956 * 109.18037 * 0.02562 * 6 5 4 20 20 O 1.21585 * 123.04187 * 179.97438 * 19 6 5 21 21 H 1.08994 * 109.46766 * 59.99393 * 1 2 3 22 22 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46887 * 299.99435 * 1 2 3 24 24 H 1.09002 * 109.46606 * 240.00212 * 2 1 3 25 25 H 1.08994 * 109.46766 * 120.00607 * 2 1 3 26 26 H 1.09002 * 110.54996 * 61.39999 * 4 3 2 27 27 H 1.08997 * 110.55013 * 298.73283 * 4 3 2 28 28 H 1.09001 * 110.55154 * 118.52658 * 5 4 3 29 29 H 1.09000 * 110.54868 * 241.18676 * 5 4 3 30 30 H 1.09008 * 109.47393 * 210.00511 * 7 6 5 31 31 H 1.09003 * 109.47621 * 330.00284 * 7 6 5 32 32 H 1.09000 * 109.46825 * 300.00069 * 8 7 6 33 33 H 1.09003 * 109.46974 * 60.00237 * 8 7 6 34 34 H 1.09000 * 109.47134 * 299.99657 * 9 8 7 35 35 H 1.08994 * 109.47058 * 59.99895 * 9 8 7 36 36 H 1.09004 * 109.47738 * 300.00025 * 10 9 8 37 37 H 1.09006 * 109.47218 * 59.99722 * 10 9 8 38 38 H 0.97004 * 119.99801 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3025 2.1844 1.1987 5 6 2.7800 3.5372 0.6359 6 7 2.7170 3.3545 -0.8218 7 6 3.0738 4.3654 -1.8202 8 6 4.5587 4.2382 -2.1667 9 6 4.9315 5.2944 -3.2090 10 6 6.4164 5.1676 -3.5549 11 6 6.7835 6.2075 -4.5820 12 1 6.0329 6.8908 -4.9508 13 6 8.0777 6.2866 -5.0509 14 7 8.9920 5.4548 -4.6014 15 14 8.5329 7.5760 -6.3234 16 1 8.2672 8.9296 -5.7737 17 1 9.9742 7.4528 -6.6593 18 1 7.7194 7.3709 -7.5488 19 6 2.2804 2.1172 -1.0918 20 8 2.1332 1.6985 -2.2237 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.0885 1.7193 1.7935 27 1 1.3993 2.3147 1.7948 28 1 2.1124 4.3395 0.9503 29 1 3.8018 3.7446 0.9539 30 1 2.4766 4.2145 -2.7196 31 1 2.8787 5.3592 -1.4171 32 1 5.1558 4.3891 -1.2673 33 1 4.7538 3.2445 -2.5699 34 1 4.3344 5.1439 -4.1084 35 1 4.7364 6.2879 -2.8053 36 1 7.0133 5.3183 -2.6554 37 1 6.6120 4.1740 -3.9584 38 1 9.9026 5.5107 -4.9310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687816387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:44 Heat of formation + Delta-G solvation = -33.811203 kcal Electronic energy + Delta-G solvation = -17050.208080 eV Core-core repulsion = 14313.520658 eV Total energy + Delta-G solvation = -2736.687422 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.98054 -36.23222 -36.10632 -34.34268 -32.57382 -31.03798 -28.85440 -28.19483 -25.14975 -23.85080 -22.83835 -21.58944 -20.03507 -19.52353 -16.95943 -16.64415 -16.21925 -16.07191 -14.95332 -14.59001 -14.36942 -14.02094 -13.78790 -13.68944 -13.51576 -12.66097 -12.50262 -12.26712 -12.12209 -12.03546 -11.72667 -11.62432 -11.26884 -10.93317 -10.55527 -10.48272 -10.45891 -9.98921 -9.60002 -9.38062 -9.08238 -8.93086 -8.32404 -8.29074 -5.94283 -3.96548 2.41416 3.23630 3.36992 3.40950 3.43732 3.70603 4.29985 4.50583 4.61660 4.69438 5.05099 5.06146 5.15216 5.20091 5.33275 5.41107 5.45322 5.49856 5.62001 5.64539 5.81144 5.91556 5.97187 6.18733 6.26551 6.53279 6.71380 6.85231 6.87522 6.98829 7.22541 7.63536 7.74259 7.90351 8.06709 8.49199 8.65565 9.10753 9.67040 11.17110 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053255 B = 0.003736 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.648599 B = 7493.781748 C = 7593.109260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 N -0.641 5.641 4 C 0.095 3.905 5 C 0.092 3.908 6 N -0.631 5.631 7 C 0.150 3.850 8 C -0.134 4.134 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.696 3.304 20 O -0.582 6.582 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 -7.373 15.398 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.026 3.974 3 N -0.380 5.380 4 C -0.029 4.029 5 C -0.032 4.032 6 N -0.368 5.368 7 C 0.029 3.971 8 C -0.172 4.172 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.398 3.602 20 O -0.459 6.459 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.530 -7.669 14.682 22.705 hybrid contribution 0.430 0.737 -0.475 0.977 sum -15.100 -6.932 14.206 21.860 Atomic orbital electron populations 1.22192 0.96148 1.02120 1.02400 1.21119 0.93845 0.79382 1.03026 1.47318 1.70791 1.14024 1.05889 1.22313 1.00999 0.90519 0.89042 1.22334 1.02542 0.97038 0.81267 1.47344 1.69534 1.13491 1.06458 1.21454 0.97025 0.88533 0.90112 1.22051 0.93914 1.01217 1.00061 1.21565 1.00573 0.96082 0.96345 1.19080 0.89064 0.97065 0.96324 1.21256 0.94694 1.16607 1.23303 0.92737 1.25039 0.96661 0.96075 0.96786 1.69966 1.02619 1.37274 1.43772 0.86656 0.77265 0.82042 0.82018 1.20279 1.21332 1.20232 1.15988 0.78220 0.81396 0.84591 1.90926 1.60207 1.73951 1.20831 0.92115 0.91479 0.92705 0.89859 0.90495 0.90311 0.90502 0.90268 0.89934 0.90022 0.90500 0.92487 0.92039 0.93181 0.93354 0.96754 0.96657 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.15 1.40 6.73 -4.04 -0.03 1.37 16 3 N -0.64 -7.55 2.97 -178.71 -0.53 -8.08 16 4 C 0.10 0.76 7.67 -3.16 -0.02 0.73 16 5 C 0.09 0.85 7.68 -3.17 -0.02 0.83 16 6 N -0.63 -8.87 2.96 -178.72 -0.53 -9.40 16 7 C 0.15 2.25 6.00 -4.04 -0.02 2.23 16 8 C -0.13 -2.42 5.54 -26.73 -0.15 -2.57 16 9 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 11 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 12 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 15 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.70 11.17 8.30 -88.12 -0.73 10.44 16 20 O -0.58 -11.88 17.04 5.29 0.09 -11.79 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.33 7.91 -51.92 -0.41 0.92 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 317.98 15.07 4.79 4.79 Total: -1.00 -35.39 317.98 -8.45 -43.84 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -6.71 Total: -5.56 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.29 Total: -3.95 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.32 Total: -44.48 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.39 -8.45 -43.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.030 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds