Wall clock time and date at job start Mon Mar 30 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46493 * 109.47094 * 2 1 4 4 C 1.47062 * 125.40573 * 90.00313 * 3 2 1 5 5 C 1.54102 * 103.98842 * 180.02562 * 4 3 2 6 6 N 1.47047 * 103.86597 * 359.92478 * 5 4 3 7 7 C 1.46495 * 125.41333 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47240 * 90.00390 * 7 6 5 9 9 C 1.53000 * 109.47144 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46960 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47290 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00258 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00253 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99762 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00193 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47643 * 59.99569 * 15 13 11 17 17 H 1.48497 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46982 * 299.99465 * 15 13 11 19 19 C 1.33956 * 109.18037 * 0.02562 * 6 5 4 20 20 O 1.21585 * 123.04187 * 179.97438 * 19 6 5 21 21 H 1.08994 * 109.46766 * 59.99393 * 1 2 3 22 22 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46887 * 299.99435 * 1 2 3 24 24 H 1.09002 * 109.46606 * 240.00212 * 2 1 3 25 25 H 1.08994 * 109.46766 * 120.00607 * 2 1 3 26 26 H 1.09002 * 110.54996 * 61.39999 * 4 3 2 27 27 H 1.08997 * 110.55013 * 298.73283 * 4 3 2 28 28 H 1.09001 * 110.55154 * 118.52658 * 5 4 3 29 29 H 1.09000 * 110.54868 * 241.18676 * 5 4 3 30 30 H 1.09008 * 109.47393 * 210.00511 * 7 6 5 31 31 H 1.09003 * 109.47621 * 330.00284 * 7 6 5 32 32 H 1.09000 * 109.46825 * 300.00069 * 8 7 6 33 33 H 1.09003 * 109.46974 * 60.00237 * 8 7 6 34 34 H 1.09000 * 109.47134 * 299.99657 * 9 8 7 35 35 H 1.08994 * 109.47058 * 59.99895 * 9 8 7 36 36 H 1.09004 * 109.47738 * 300.00025 * 10 9 8 37 37 H 1.09006 * 109.47218 * 59.99722 * 10 9 8 38 38 H 0.97004 * 119.99801 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3025 2.1844 1.1987 5 6 2.7800 3.5372 0.6359 6 7 2.7170 3.3545 -0.8218 7 6 3.0738 4.3654 -1.8202 8 6 4.5587 4.2382 -2.1667 9 6 4.9315 5.2944 -3.2090 10 6 6.4164 5.1676 -3.5549 11 6 6.7835 6.2075 -4.5820 12 1 6.0329 6.8908 -4.9508 13 6 8.0777 6.2866 -5.0509 14 7 8.9920 5.4548 -4.6014 15 14 8.5329 7.5760 -6.3234 16 1 8.2672 8.9296 -5.7737 17 1 9.9742 7.4528 -6.6593 18 1 7.7194 7.3709 -7.5488 19 6 2.2804 2.1172 -1.0918 20 8 2.1332 1.6985 -2.2237 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.0885 1.7193 1.7935 27 1 1.3993 2.3147 1.7948 28 1 2.1124 4.3395 0.9503 29 1 3.8018 3.7446 0.9539 30 1 2.4766 4.2145 -2.7196 31 1 2.8787 5.3592 -1.4171 32 1 5.1558 4.3891 -1.2673 33 1 4.7538 3.2445 -2.5699 34 1 4.3344 5.1439 -4.1084 35 1 4.7364 6.2879 -2.8053 36 1 7.0133 5.3183 -2.6554 37 1 6.6120 4.1740 -3.9584 38 1 9.9026 5.5107 -4.9310 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687816387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:43 Heat of formation + Delta-G solvation = -56.472280 kcal Electronic energy + Delta-G solvation = -17051.190738 eV Core-core repulsion = 14313.520658 eV Total energy + Delta-G solvation = -2737.670080 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99404 -37.48702 -37.32037 -35.89472 -34.36948 -32.30485 -30.06296 -29.44031 -26.85857 -24.73030 -24.15433 -22.81781 -21.84291 -20.59636 -18.46701 -17.92396 -17.54504 -17.14522 -16.52342 -16.26889 -15.56204 -15.21091 -14.80358 -14.69725 -14.47073 -14.20968 -13.90829 -13.71982 -13.46204 -13.08838 -12.84257 -12.76469 -12.67323 -12.38894 -12.29431 -12.12171 -11.99675 -11.45154 -11.38776 -11.27458 -11.13675 -10.55866 -10.10005 -9.28978 -8.20338 -6.32396 1.39262 1.43426 1.46168 1.51282 2.07281 2.40976 2.85488 3.12207 3.60409 3.79410 4.04872 4.05942 4.18780 4.38347 4.40688 4.42202 4.51096 4.60813 4.63045 4.73367 4.80489 4.85380 4.92748 4.99159 5.07537 5.23019 5.27129 5.28624 5.35611 5.52399 5.74012 5.77727 5.84975 5.88099 6.24046 6.61750 6.84938 7.37023 7.51260 8.91584 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053255 B = 0.003736 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.648599 B = 7493.781748 C = 7593.109260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 N -0.639 5.639 4 C 0.095 3.905 5 C 0.085 3.915 6 N -0.637 5.637 7 C 0.158 3.842 8 C -0.120 4.120 9 C -0.095 4.095 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.063 0.937 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.969 3.031 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.679 3.321 20 O -0.642 6.642 21 H 0.028 0.972 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.045 0.955 35 H 0.069 0.931 36 H -0.006 1.006 37 H -0.021 1.021 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.668 -6.110 17.297 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 N -0.377 5.377 4 C -0.027 4.027 5 C -0.037 4.037 6 N -0.373 5.373 7 C 0.037 3.963 8 C -0.159 4.159 9 C -0.133 4.133 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.081 0.919 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.193 1.193 19 C 0.381 3.619 20 O -0.525 6.525 21 H 0.047 0.953 22 H 0.105 0.895 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.012 0.988 37 H -0.003 1.003 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.592 -6.405 16.658 24.368 hybrid contribution 0.777 0.282 -1.001 1.298 sum -15.815 -6.123 15.657 23.081 Atomic orbital electron populations 1.22117 0.95075 1.03194 1.01573 1.21351 0.94740 0.78474 1.03493 1.47516 1.69603 1.14580 1.05995 1.22645 1.03197 0.89145 0.87745 1.22721 1.04025 0.98888 0.78051 1.47376 1.68781 1.12624 1.08515 1.21235 0.93972 0.90573 0.90565 1.21855 0.96696 0.98175 0.99134 1.21364 0.96399 0.98210 0.97317 1.19010 0.92709 0.94692 0.94953 1.21726 0.95369 1.17257 1.24009 0.91852 1.26066 0.96557 0.98459 0.99102 1.70113 1.03118 1.39159 1.45275 0.85446 0.77043 0.79259 0.78972 1.18674 1.20819 1.19328 1.16460 0.78411 0.82279 0.84788 1.90866 1.62772 1.75287 1.23534 0.95301 0.89527 0.90967 0.92554 0.86810 0.88149 0.87345 0.87463 0.89069 0.91883 0.86935 0.91654 0.95405 0.93572 0.91279 0.98758 1.00279 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.24 71.99 0.74 -1.70 16 2 C 0.14 2.49 6.73 86.38 0.58 3.08 16 3 N -0.64 -14.18 2.97 -837.87 -2.49 -16.66 16 4 C 0.09 1.17 7.67 86.64 0.66 1.83 16 5 C 0.09 1.31 7.68 86.65 0.67 1.98 16 6 N -0.64 -17.25 2.96 -838.07 -2.48 -19.73 16 7 C 0.16 4.66 6.00 86.38 0.52 5.18 16 8 C -0.12 -4.40 5.54 30.60 0.17 -4.23 16 9 C -0.09 -4.05 5.15 30.59 0.16 -3.90 16 10 C 0.02 1.31 4.97 29.85 0.15 1.46 16 11 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 12 H 0.06 3.55 7.74 -2.91 -0.02 3.52 16 13 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 14 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 15 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 16 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 C 0.68 22.00 8.30 179.47 1.49 23.49 16 20 O -0.64 -27.76 17.04 -3.98 -0.07 -27.83 16 21 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 25 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 2.09 7.91 -2.38 -0.02 2.07 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 37 H -0.02 -1.31 8.14 -2.38 -0.02 -1.33 16 38 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.05 317.98 4.11 -76.94 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.00 Total: 3.33 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.83 Total: -4.67 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -4.68 Total: -95.20 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.07 Total: -27.83 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.05 4.11 -76.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687816387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.468 kcal (2) G-P(sol) polarization free energy of solvation -81.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds