Wall clock time and date at job start Mon Mar 30 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.50707 * 109.46891 * 240.00091 * 2 1 3 5 5 H 1.07994 * 120.00275 * 245.41386 * 4 2 1 6 6 C 1.37883 * 119.99505 * 65.41977 * 4 2 1 7 7 N 1.31508 * 119.99619 * 185.37968 * 6 4 2 8 8 Si 1.86792 * 120.00121 * 5.65249 * 6 4 2 9 9 H 1.48503 * 109.47418 * 269.72700 * 8 6 4 10 10 H 1.48504 * 109.47294 * 29.72642 * 8 6 4 11 11 H 1.48506 * 109.47006 * 149.72495 * 8 6 4 12 12 N 1.46504 * 109.47130 * 120.00766 * 2 1 3 13 13 C 1.34781 * 119.99433 * 274.99500 * 12 2 1 14 14 O 1.21276 * 120.00427 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99560 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47061 * 186.26454 * 15 13 12 17 17 H 1.08992 * 109.47120 * 306.33193 * 16 15 13 18 18 C 1.53008 * 109.47051 * 66.33390 * 16 15 13 19 19 N 1.46899 * 109.46922 * 185.00151 * 18 16 15 20 20 C 1.53006 * 109.47351 * 186.33012 * 16 15 13 21 21 C 1.52995 * 117.49857 * 134.00359 * 20 16 15 22 22 C 1.52994 * 117.49416 * 65.34604 * 20 16 15 23 23 H 1.08997 * 109.47178 * 54.90488 * 1 2 3 24 24 H 1.09004 * 109.46931 * 174.91045 * 1 2 3 25 25 H 1.09006 * 109.46915 * 294.90683 * 1 2 3 26 26 H 0.97006 * 120.00165 * 355.26102 * 7 6 4 27 27 H 0.96999 * 120.00180 * 94.99955 * 12 2 1 28 28 H 1.09000 * 109.47300 * 306.26695 * 15 13 12 29 29 H 1.09003 * 109.47487 * 66.26633 * 15 13 12 30 30 H 1.09004 * 109.46544 * 304.99425 * 18 16 15 31 31 H 1.08998 * 109.47012 * 64.99648 * 18 16 15 32 32 H 1.00904 * 110.99486 * 179.97438 * 19 18 16 33 33 H 1.00895 * 111.00026 * 303.95021 * 19 18 16 34 34 H 1.09000 * 115.54697 * 279.67850 * 20 16 15 35 35 H 1.09001 * 117.50061 * 0.02562 * 21 20 16 36 36 H 1.09003 * 117.49665 * 145.01953 * 21 20 16 37 37 H 1.09004 * 117.49920 * 214.98001 * 22 20 16 38 38 H 1.09002 * 117.50183 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1340 6 6 1.7937 -0.1777 -2.4797 7 7 2.1380 -0.8484 -3.5572 8 14 0.9884 1.5000 -2.6414 9 1 -0.4861 1.3369 -2.7089 10 1 1.3407 2.3337 -1.4641 11 1 1.4703 2.1631 -3.8796 12 7 2.0183 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1582 2.4118 15 6 2.6500 -0.7288 3.5873 16 6 2.5543 0.2088 4.7926 17 1 3.0680 1.1434 4.5675 18 6 1.0832 0.4964 5.0995 19 7 0.9932 1.4890 6.1787 20 6 3.2086 -0.4532 6.0070 21 6 4.1621 0.3984 6.8475 22 6 4.7160 -0.7077 5.9460 23 1 -0.3633 0.5908 -0.8408 24 1 -0.3633 -1.0237 -0.0912 25 1 -0.3633 0.4328 0.9321 26 1 2.6212 -1.6854 -3.4738 27 1 2.2490 -1.6319 1.1525 28 1 2.0432 -1.6161 3.7682 29 1 3.6887 -1.0234 3.4378 30 1 0.5952 0.8859 4.2060 31 1 0.5902 -0.4245 5.4107 32 1 0.0307 1.6964 6.3998 33 1 1.4939 1.1789 6.9979 34 1 2.5950 -1.1867 6.5300 35 1 4.3230 1.4304 6.5356 36 1 4.1761 0.2249 7.9235 37 1 5.0943 -1.6085 6.4293 38 1 5.2415 -0.4040 5.0406 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690416039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:11 Heat of formation + Delta-G solvation = -33.104471 kcal Electronic energy + Delta-G solvation = -17543.097244 eV Core-core repulsion = 14806.440469 eV Total energy + Delta-G solvation = -2736.656776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.52182 -37.89490 -35.07449 -34.31999 -32.44238 -31.51738 -29.56466 -25.75126 -24.74842 -22.96056 -22.45756 -20.99992 -19.69302 -19.43261 -17.72666 -16.36975 -16.13093 -15.66238 -15.04856 -14.79942 -14.61760 -13.94355 -13.66595 -12.98736 -12.74973 -12.71108 -12.42519 -12.11310 -11.86598 -11.68578 -11.58762 -11.43813 -11.02956 -10.85279 -10.53041 -10.22107 -10.06800 -10.02963 -9.76095 -9.07143 -8.84656 -8.61268 -8.53960 -8.11706 -6.54377 -4.22537 3.30484 3.37160 3.46977 3.60855 3.64550 4.04462 4.42418 4.53831 4.61567 4.81388 4.91173 5.11586 5.22337 5.29224 5.36267 5.48869 5.53738 5.57441 5.72406 5.79710 5.89091 5.98632 6.04360 6.30014 6.38042 6.44493 6.48238 6.63831 6.92154 7.19670 7.29528 7.41571 7.48723 7.67130 8.23528 8.51773 8.71884 9.03507 9.48303 10.86042 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.005340 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.161048 B = 5242.382124 C = 5622.535563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.234 3.766 3 H 0.048 0.952 4 C -0.608 4.608 5 H 0.061 0.939 6 C 0.035 3.965 7 N -0.906 5.906 8 Si 1.051 2.949 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.705 5.705 13 C 0.498 3.502 14 O -0.551 6.551 15 C -0.136 4.136 16 C -0.039 4.039 17 H 0.090 0.910 18 C 0.068 3.932 19 N -0.845 5.845 20 C -0.150 4.150 21 C -0.175 4.175 22 C -0.181 4.181 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.268 0.732 27 H 0.392 0.608 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.016 0.984 32 H 0.337 0.663 33 H 0.335 0.665 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.637 -1.148 19.246 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.065 0.935 4 C -0.647 4.647 5 H 0.079 0.921 6 C -0.171 4.171 7 N -0.540 5.540 8 Si 0.880 3.120 9 H -0.208 1.208 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.430 6.430 15 C -0.177 4.177 16 C -0.058 4.058 17 H 0.108 0.892 18 C -0.063 4.063 19 N -0.374 5.374 20 C -0.169 4.169 21 C -0.212 4.212 22 C -0.218 4.218 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.035 0.965 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.230 1.265 17.621 17.668 hybrid contribution 0.230 -2.624 1.574 3.068 sum 0.460 -1.359 19.196 19.249 Atomic orbital electron populations 1.22385 0.99310 1.00702 0.99157 1.19181 0.90251 0.94766 0.82769 0.93454 1.22177 1.40672 1.10603 0.91198 0.92073 1.25706 0.96151 1.03577 0.91639 1.70834 1.36539 1.16446 1.30208 0.83914 0.76424 0.75579 0.76088 1.20839 1.19947 1.21425 1.46301 1.65222 1.13677 1.10077 1.20569 0.78545 0.87660 0.84862 1.90656 1.51190 1.16021 1.85151 1.21686 1.03079 0.99535 0.93367 1.20503 0.96091 0.98289 0.90963 0.89162 1.21905 0.95886 0.92631 0.95853 1.58642 1.18556 1.48012 1.12229 1.22356 0.92240 1.02488 0.99776 1.22996 1.04039 0.96965 0.97159 1.22949 0.96179 1.00370 1.02347 0.93231 0.93242 0.94883 0.92207 0.77567 0.89715 0.89004 0.89259 0.96536 0.85155 0.85273 0.88410 0.88423 0.89200 0.89053 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.08 37.16 0.34 -3.22 16 2 C 0.23 5.69 2.14 -69.08 -0.15 5.54 16 3 H 0.05 1.27 6.06 -51.93 -0.31 0.96 16 4 C -0.61 -16.64 9.09 -34.43 -0.31 -16.95 16 5 H 0.06 1.74 7.95 -52.49 -0.42 1.32 16 6 C 0.03 0.99 5.43 -17.82 -0.10 0.90 16 7 N -0.91 -27.39 13.70 55.43 0.76 -26.63 16 8 Si 1.05 25.81 25.31 -169.99 -4.30 21.50 16 9 H -0.28 -6.54 6.82 56.52 0.39 -6.15 16 10 H -0.27 -6.56 6.35 56.52 0.36 -6.20 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 N -0.70 -14.23 5.07 -54.93 -0.28 -14.51 16 13 C 0.50 9.35 7.35 -10.98 -0.08 9.27 16 14 O -0.55 -12.30 14.00 5.56 0.08 -12.22 16 15 C -0.14 -1.84 5.12 -27.88 -0.14 -1.98 16 16 C -0.04 -0.51 1.81 -90.61 -0.16 -0.67 16 17 H 0.09 1.42 7.62 -51.93 -0.40 1.02 16 18 C 0.07 0.90 6.05 -3.82 -0.02 0.87 16 19 N -0.85 -9.85 9.62 -10.37 -0.10 -9.95 16 20 C -0.15 -1.51 4.18 -90.62 -0.38 -1.89 16 21 C -0.17 -1.62 9.86 -26.70 -0.26 -1.88 16 22 C -0.18 -1.71 9.73 -26.70 -0.26 -1.97 16 23 H 0.05 1.13 4.45 -51.93 -0.23 0.90 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.27 7.99 8.72 -40.82 -0.36 7.64 16 27 H 0.39 7.01 8.53 -40.82 -0.35 6.67 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.13 7.47 -51.93 -0.39 0.74 16 30 H 0.09 1.48 6.23 -51.93 -0.32 1.16 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.34 3.38 9.08 -39.29 -0.36 3.02 16 33 H 0.34 3.31 7.80 -39.29 -0.31 3.00 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.97 7.93 -51.93 -0.41 0.55 16 LS Contribution 304.70 15.07 4.59 4.59 Total: -1.00 -31.42 304.70 -6.87 -38.28 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.08 Total: 10.92 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.53 Total: -11.99 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.38 Total: -51.09 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.22 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.30 Total: 21.50 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.42 -6.87 -38.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690416039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.179 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds