Wall clock time and date at job start Mon Mar 30 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47188 * 2 1 4 4 C 1.50707 * 109.46891 * 240.00091 * 2 1 3 5 5 H 1.07994 * 120.00275 * 245.41386 * 4 2 1 6 6 C 1.37883 * 119.99505 * 65.41977 * 4 2 1 7 7 N 1.31508 * 119.99619 * 185.37968 * 6 4 2 8 8 Si 1.86792 * 120.00121 * 5.65249 * 6 4 2 9 9 H 1.48503 * 109.47418 * 269.72700 * 8 6 4 10 10 H 1.48504 * 109.47294 * 29.72642 * 8 6 4 11 11 H 1.48506 * 109.47006 * 149.72495 * 8 6 4 12 12 N 1.46504 * 109.47130 * 120.00766 * 2 1 3 13 13 C 1.34781 * 119.99433 * 274.99500 * 12 2 1 14 14 O 1.21276 * 120.00427 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99560 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47061 * 186.26454 * 15 13 12 17 17 H 1.08992 * 109.47120 * 306.33193 * 16 15 13 18 18 C 1.53008 * 109.47051 * 66.33390 * 16 15 13 19 19 N 1.46899 * 109.46922 * 185.00151 * 18 16 15 20 20 C 1.53006 * 109.47351 * 186.33012 * 16 15 13 21 21 C 1.52995 * 117.49857 * 134.00359 * 20 16 15 22 22 C 1.52994 * 117.49416 * 65.34604 * 20 16 15 23 23 H 1.08997 * 109.47178 * 54.90488 * 1 2 3 24 24 H 1.09004 * 109.46931 * 174.91045 * 1 2 3 25 25 H 1.09006 * 109.46915 * 294.90683 * 1 2 3 26 26 H 0.97006 * 120.00165 * 355.26102 * 7 6 4 27 27 H 0.96999 * 120.00180 * 94.99955 * 12 2 1 28 28 H 1.09000 * 109.47300 * 306.26695 * 15 13 12 29 29 H 1.09003 * 109.47487 * 66.26633 * 15 13 12 30 30 H 1.09004 * 109.46544 * 304.99425 * 18 16 15 31 31 H 1.08998 * 109.47012 * 64.99648 * 18 16 15 32 32 H 1.00904 * 110.99486 * 179.97438 * 19 18 16 33 33 H 1.00895 * 111.00026 * 303.95021 * 19 18 16 34 34 H 1.09000 * 115.54697 * 279.67850 * 20 16 15 35 35 H 1.09001 * 117.50061 * 0.02562 * 21 20 16 36 36 H 1.09003 * 117.49665 * 145.01953 * 21 20 16 37 37 H 1.09004 * 117.49920 * 214.98001 * 22 20 16 38 38 H 1.09002 * 117.50183 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5791 -1.6367 -1.1340 6 6 1.7937 -0.1777 -2.4797 7 7 2.1380 -0.8484 -3.5572 8 14 0.9884 1.5000 -2.6414 9 1 -0.4861 1.3369 -2.7089 10 1 1.3407 2.3337 -1.4641 11 1 1.4703 2.1631 -3.8796 12 7 2.0183 -0.6908 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1582 2.4118 15 6 2.6500 -0.7288 3.5873 16 6 2.5543 0.2088 4.7926 17 1 3.0680 1.1434 4.5675 18 6 1.0832 0.4964 5.0995 19 7 0.9932 1.4890 6.1787 20 6 3.2086 -0.4532 6.0070 21 6 4.1621 0.3984 6.8475 22 6 4.7160 -0.7077 5.9460 23 1 -0.3633 0.5908 -0.8408 24 1 -0.3633 -1.0237 -0.0912 25 1 -0.3633 0.4328 0.9321 26 1 2.6212 -1.6854 -3.4738 27 1 2.2490 -1.6319 1.1525 28 1 2.0432 -1.6161 3.7682 29 1 3.6887 -1.0234 3.4378 30 1 0.5952 0.8859 4.2060 31 1 0.5902 -0.4245 5.4107 32 1 0.0307 1.6964 6.3998 33 1 1.4939 1.1789 6.9979 34 1 2.5950 -1.1867 6.5300 35 1 4.3230 1.4304 6.5356 36 1 4.1761 0.2249 7.9235 37 1 5.0943 -1.6085 6.4293 38 1 5.2415 -0.4040 5.0406 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690416039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:11 Heat of formation + Delta-G solvation = -57.017615 kcal Electronic energy + Delta-G solvation = -17544.134196 eV Core-core repulsion = 14806.440469 eV Total energy + Delta-G solvation = -2737.693727 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92584 -38.97132 -36.83004 -35.33252 -34.45104 -32.79794 -31.23556 -27.06878 -26.66215 -23.96063 -23.22410 -22.62719 -21.22528 -20.62067 -19.72956 -17.87224 -17.19810 -17.00858 -16.33927 -16.01298 -15.89524 -15.35306 -14.95077 -14.70750 -14.44315 -14.30787 -13.77908 -13.63585 -13.41992 -13.19226 -12.84053 -12.48726 -12.35143 -12.03731 -11.97240 -11.85989 -11.70466 -11.07236 -10.96582 -10.87223 -10.71319 -10.57997 -9.87416 -9.51696 -8.79683 -6.48870 1.39670 1.50025 1.67524 1.81633 2.38311 2.48950 2.96087 3.02379 3.59004 3.69706 3.94637 4.11947 4.13003 4.24676 4.36871 4.45494 4.50275 4.58205 4.64376 4.69192 4.75458 4.82786 4.90128 5.00501 5.04581 5.13170 5.28029 5.33834 5.41266 5.47555 5.63584 5.66658 5.98456 6.30961 6.50092 6.69566 6.88379 7.26837 7.49579 8.59724 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.005340 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.161048 B = 5242.382124 C = 5622.535563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.237 3.763 3 H 0.022 0.978 4 C -0.603 4.603 5 H 0.042 0.958 6 C -0.010 4.010 7 N -0.936 5.936 8 Si 1.082 2.918 9 H -0.257 1.257 10 H -0.269 1.269 11 H -0.286 1.286 12 N -0.707 5.707 13 C 0.496 3.504 14 O -0.588 6.588 15 C -0.124 4.124 16 C -0.034 4.034 17 H 0.057 0.943 18 C 0.071 3.929 19 N -0.854 5.854 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.180 4.180 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.043 0.957 26 H 0.258 0.742 27 H 0.403 0.597 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.345 0.655 33 H 0.347 0.653 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 -1.729 21.519 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.132 3.868 3 H 0.039 0.961 4 C -0.641 4.641 5 H 0.060 0.940 6 C -0.210 4.210 7 N -0.571 5.571 8 Si 0.906 3.094 9 H -0.182 1.182 10 H -0.195 1.195 11 H -0.212 1.212 12 N -0.356 5.356 13 C 0.284 3.716 14 O -0.469 6.469 15 C -0.164 4.164 16 C -0.054 4.054 17 H 0.075 0.925 18 C -0.060 4.060 19 N -0.385 5.385 20 C -0.167 4.167 21 C -0.208 4.208 22 C -0.217 4.217 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.238 0.762 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.135 0.865 35 H 0.101 0.899 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.161 0.653 19.930 19.941 hybrid contribution 0.416 -2.451 0.927 2.653 sum 0.255 -1.798 20.857 20.936 Atomic orbital electron populations 1.22259 0.97675 1.01266 0.99629 1.18859 0.91439 0.93258 0.83291 0.96053 1.22359 1.39495 1.09728 0.92556 0.94012 1.26840 0.96512 1.05927 0.91726 1.70930 1.38380 1.16698 1.31142 0.83508 0.77310 0.72426 0.76203 1.18241 1.19474 1.21229 1.46174 1.65664 1.14234 1.09538 1.21458 0.77281 0.87296 0.85574 1.90643 1.52554 1.17955 1.85766 1.21703 1.04200 0.99934 0.90598 1.20394 0.95940 0.96988 0.92052 0.92495 1.21753 0.95800 0.93475 0.94935 1.58561 1.19547 1.47864 1.12533 1.22235 0.92630 1.03028 0.98772 1.23028 1.03343 0.96187 0.98268 1.23014 0.95435 1.01104 1.02125 0.93504 0.92454 0.93795 0.93311 0.76197 0.86784 0.87317 0.93007 0.94563 0.84170 0.83896 0.86516 0.89916 0.87124 0.87192 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.60 9.08 71.98 0.65 -5.94 16 2 C 0.24 11.44 2.14 44.25 0.09 11.53 16 3 H 0.02 1.16 6.06 -2.39 -0.01 1.15 16 4 C -0.60 -33.20 9.09 25.60 0.23 -32.97 16 5 H 0.04 2.41 7.95 -2.91 -0.02 2.39 16 6 C -0.01 -0.60 5.43 84.66 0.46 -0.14 16 7 N -0.94 -57.28 13.70 21.45 0.29 -56.98 16 8 Si 1.08 51.75 25.31 68.60 1.74 53.48 16 9 H -0.26 -11.25 6.82 99.48 0.68 -10.57 16 10 H -0.27 -12.61 6.35 99.48 0.63 -11.98 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 N -0.71 -28.01 5.07 -446.09 -2.26 -30.27 16 13 C 0.50 18.23 7.35 87.66 0.64 18.87 16 14 O -0.59 -26.39 14.00 -3.02 -0.04 -26.44 16 15 C -0.12 -3.09 5.12 29.85 0.15 -2.94 16 16 C -0.03 -0.83 1.81 -10.79 -0.02 -0.85 16 17 H 0.06 1.78 7.62 -2.39 -0.02 1.76 16 18 C 0.07 1.78 6.05 86.31 0.52 2.30 16 19 N -0.85 -18.63 9.62 -186.71 -1.80 -20.42 16 20 C -0.15 -2.55 4.18 -10.80 -0.05 -2.59 16 21 C -0.17 -2.75 9.86 30.62 0.30 -2.45 16 22 C -0.18 -2.89 9.73 30.61 0.30 -2.59 16 23 H 0.05 2.06 4.45 -2.39 -0.01 2.05 16 24 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 25 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.26 15.76 8.72 -92.70 -0.81 14.95 16 27 H 0.40 13.98 8.53 -92.71 -0.79 13.19 16 28 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 2.39 7.47 -2.39 -0.02 2.37 16 30 H 0.05 1.70 6.23 -2.39 -0.01 1.69 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.35 6.43 9.08 -89.69 -0.81 5.61 16 33 H 0.35 6.07 7.80 -89.70 -0.70 5.37 16 34 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 Total: -1.00 -68.56 304.70 -0.14 -68.71 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: -1.37 Total: 29.70 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 3.29 Total: -17.77 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -3.76 Total: -107.68 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.04 Total: -26.44 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 1.74 Total: 53.48 kcal Total: -68.56 -0.14 -68.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690416039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.691 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds