Wall clock time and date at job start Mon Mar 30 2020 03:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99843 * 2 1 4 4 H 1.08993 * 112.91001 * 336.24900 * 3 2 1 5 5 C 1.53962 * 113.66526 * 107.55311 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88647 * 5 3 2 7 7 H 1.08997 * 113.61225 * 89.18406 * 6 5 3 8 8 C 1.50698 * 113.68885 * 220.07854 * 6 5 3 9 9 O 1.21275 * 120.00275 * 97.53833 * 8 6 5 10 10 N 1.34780 * 119.99784 * 277.53856 * 8 6 5 11 11 C 1.46493 * 120.00113 * 359.97438 * 10 8 6 12 12 C 1.46502 * 119.99746 * 180.02562 * 10 8 6 13 13 H 1.08997 * 109.47358 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.47123 * 239.99586 * 12 10 8 15 15 C 1.50703 * 109.47283 * 119.99957 * 12 10 8 16 16 H 1.07999 * 119.99799 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00079 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00279 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99982 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46829 * 90.00051 * 19 17 15 21 21 H 1.48500 * 109.47354 * 209.99851 * 19 17 15 22 22 H 1.48495 * 109.47517 * 330.00436 * 19 17 15 23 23 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 24 24 H 1.09003 * 109.47079 * 300.00250 * 1 2 3 25 25 H 1.09005 * 109.46865 * 59.99631 * 1 2 3 26 26 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.00904 * 111.00079 * 123.95568 * 2 1 3 28 28 H 1.08997 * 113.53543 * 25.33322 * 5 3 2 29 29 H 1.08994 * 113.66446 * 254.45524 * 5 3 2 30 30 H 1.09005 * 109.46741 * 90.00311 * 11 10 8 31 31 H 1.08998 * 109.47523 * 209.99844 * 11 10 8 32 32 H 1.08998 * 109.47485 * 330.00684 * 11 10 8 33 33 H 1.08992 * 109.47647 * 180.02562 * 14 12 10 34 34 H 1.09007 * 109.47073 * 300.00359 * 14 12 10 35 35 H 1.09005 * 109.47181 * 59.99807 * 14 12 10 36 36 H 0.96994 * 120.00350 * 180.02562 * 18 17 15 37 37 H 1.09002 * 113.61445 * 139.98212 * 23 6 5 38 38 H 1.09002 * 113.61408 * 270.79943 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.2896 2.0968 -0.4044 5 6 2.6139 1.7960 1.3445 6 6 3.7164 2.4918 0.5288 7 1 3.4818 3.5241 0.2693 8 6 5.0950 2.3350 1.1169 9 8 5.8403 1.4765 0.6946 10 7 5.4997 3.1488 2.1121 11 6 4.5997 4.1862 2.6218 12 6 6.8402 2.9967 2.6834 13 1 7.3590 2.1806 2.1805 14 6 6.7257 2.6842 4.1767 15 6 7.6144 4.2759 2.4958 16 1 7.1541 5.1179 2.0002 17 6 8.9102 4.3714 2.9569 18 7 9.4709 3.3460 3.5599 19 14 9.8701 5.9569 2.7237 20 1 9.6516 6.8444 3.8941 21 1 11.3170 5.6462 2.6015 22 1 9.4046 6.6406 1.4904 23 6 3.4085 1.4888 -0.5955 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8307 -0.5262 0.7814 28 1 2.9750 0.9584 1.9413 29 1 1.9912 2.4856 1.9142 30 1 4.0053 3.7810 3.4408 31 1 5.1862 5.0313 2.9820 32 1 3.9376 4.5179 1.8220 33 1 7.7229 2.5715 4.6019 34 1 6.2066 3.5001 4.6799 35 1 6.1656 1.7589 4.3124 36 1 10.3824 3.4132 3.8846 37 1 3.4271 1.9305 -1.5918 38 1 3.9879 0.5679 -0.5298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693594518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:13 Heat of formation + Delta-G solvation = -14.368273 kcal Electronic energy + Delta-G solvation = -17776.532518 eV Core-core repulsion = 15040.688204 eV Total energy + Delta-G solvation = -2735.844313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00674 -37.77902 -35.24613 -33.92637 -32.74007 -29.52264 -26.50283 -25.96190 -25.54099 -25.19692 -23.91559 -21.10888 -19.70515 -18.10328 -16.75464 -16.25933 -15.87642 -15.47127 -14.83439 -14.66398 -14.08898 -13.81712 -13.60219 -12.80330 -12.56276 -12.41221 -12.33033 -12.08384 -11.78051 -11.66243 -11.47812 -11.07477 -10.88227 -10.85328 -10.75970 -10.52890 -10.38853 -10.22585 -10.14868 -9.15562 -8.82357 -8.46108 -8.39381 -7.53632 -6.05831 -4.13864 3.26713 3.33746 3.36140 3.42573 3.93823 4.23388 4.41744 4.58522 4.76851 4.91645 4.98450 5.20827 5.24955 5.34623 5.41408 5.48823 5.69213 5.72412 5.84657 5.89012 6.05780 6.09302 6.20717 6.39041 6.44308 6.76920 6.85385 6.98801 7.09063 7.24962 7.47099 7.56883 7.74034 8.04259 8.22627 8.59110 8.85754 9.13262 9.52824 10.99475 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049612 B = 0.005156 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.240813 B = 5428.996695 C = 5462.212169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.684 5.684 3 C 0.064 3.936 4 H 0.096 0.904 5 C -0.146 4.146 6 C -0.136 4.136 7 H 0.106 0.894 8 C 0.513 3.487 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.087 3.913 12 C 0.256 3.744 13 H 0.062 0.938 14 C -0.145 4.145 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.104 4.104 24 H 0.021 0.979 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.345 0.655 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.028 0.972 35 H 0.009 0.991 36 H 0.263 0.737 37 H 0.068 0.932 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.083 -1.101 -2.908 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.314 5.314 3 C -0.047 4.047 4 H 0.114 0.886 5 C -0.186 4.186 6 C -0.158 4.158 7 H 0.124 0.876 8 C 0.300 3.700 9 O -0.431 6.431 10 N -0.323 5.323 11 C -0.058 4.058 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.203 4.203 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.143 4.143 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.458 -1.685 -3.708 15.985 hybrid contribution 0.341 1.375 0.988 1.727 sum -15.116 -0.311 -2.719 15.362 Atomic orbital electron populations 1.22215 0.88218 1.01642 1.00184 1.60375 1.07395 1.13579 1.50020 1.23121 0.96123 0.89541 0.95867 0.88592 1.23578 0.96939 1.00886 0.97192 1.22573 0.93737 1.00632 0.98852 0.87553 1.20161 0.87900 0.81772 0.80209 1.90631 1.55763 1.35348 1.61368 1.48216 1.17097 1.31771 1.35180 1.21563 0.93635 0.92571 0.97982 1.18925 0.76864 0.98235 0.90372 0.91970 1.22072 1.02803 0.96469 0.99005 1.21327 0.98092 0.98847 1.38142 0.92294 1.24896 0.97316 0.96663 0.94930 1.69880 1.14227 1.29786 1.38710 0.86496 0.79217 0.83227 0.78456 1.20643 1.21087 1.19936 1.22934 0.94725 0.99704 0.96892 0.96075 0.91847 0.91683 0.83595 0.89613 0.91149 0.94146 0.90315 0.92887 0.88902 0.95260 0.97145 0.92704 0.91293 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.54 60.07 0.63 0.87 16 2 N -0.68 -7.49 6.97 -113.03 -0.79 -8.28 16 3 C 0.06 0.73 4.19 -66.80 -0.28 0.45 16 4 H 0.10 0.96 7.87 -51.93 -0.41 0.55 16 5 C -0.15 -1.81 7.23 -25.82 -0.19 -1.99 16 6 C -0.14 -2.04 2.96 -90.96 -0.27 -2.31 16 7 H 0.11 1.40 6.94 -51.93 -0.36 1.04 16 8 C 0.51 10.75 7.21 -10.98 -0.08 10.67 16 9 O -0.55 -13.91 15.23 5.56 0.08 -13.83 16 10 N -0.59 -12.79 2.75 -175.27 -0.48 -13.27 16 11 C 0.09 1.47 9.24 59.84 0.55 2.02 16 12 C 0.26 6.66 2.64 -69.08 -0.18 6.48 16 13 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 14 C -0.14 -3.53 8.97 37.16 0.33 -3.19 16 15 C -0.53 -14.36 7.99 -34.44 -0.28 -14.64 16 16 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 19 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.10 -1.47 7.20 -25.92 -0.19 -1.66 16 24 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.35 3.68 8.28 -39.29 -0.33 3.35 16 28 H 0.09 1.16 7.78 -51.93 -0.40 0.76 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 32 H 0.05 0.73 6.22 -51.93 -0.32 0.41 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 34 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.65 7.43 -51.93 -0.39 1.27 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -31.21 305.40 -7.13 -38.34 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.12 Total: 2.68 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.03 Total: -1.63 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -0.64 Total: -46.31 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.21 -7.13 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693594518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.973 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds