Wall clock time and date at job start Mon Mar 30 2020 03:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99843 * 2 1 4 4 H 1.08993 * 112.91001 * 336.24900 * 3 2 1 5 5 C 1.53962 * 113.66526 * 107.55311 * 3 2 1 6 6 C 1.53782 * 87.11063 * 139.88647 * 5 3 2 7 7 H 1.08997 * 113.61225 * 89.18406 * 6 5 3 8 8 C 1.50698 * 113.68885 * 220.07854 * 6 5 3 9 9 O 1.21275 * 120.00275 * 97.53833 * 8 6 5 10 10 N 1.34780 * 119.99784 * 277.53856 * 8 6 5 11 11 C 1.46493 * 120.00113 * 359.97438 * 10 8 6 12 12 C 1.46502 * 119.99746 * 180.02562 * 10 8 6 13 13 H 1.08997 * 109.47358 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.47123 * 239.99586 * 12 10 8 15 15 C 1.50703 * 109.47283 * 119.99957 * 12 10 8 16 16 H 1.07999 * 119.99799 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00079 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00279 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 119.99982 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46829 * 90.00051 * 19 17 15 21 21 H 1.48500 * 109.47354 * 209.99851 * 19 17 15 22 22 H 1.48495 * 109.47517 * 330.00436 * 19 17 15 23 23 C 1.53781 * 87.08260 * 334.63747 * 6 5 3 24 24 H 1.09003 * 109.47079 * 300.00250 * 1 2 3 25 25 H 1.09005 * 109.46865 * 59.99631 * 1 2 3 26 26 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 27 27 H 1.00904 * 111.00079 * 123.95568 * 2 1 3 28 28 H 1.08997 * 113.53543 * 25.33322 * 5 3 2 29 29 H 1.08994 * 113.66446 * 254.45524 * 5 3 2 30 30 H 1.09005 * 109.46741 * 90.00311 * 11 10 8 31 31 H 1.08998 * 109.47523 * 209.99844 * 11 10 8 32 32 H 1.08998 * 109.47485 * 330.00684 * 11 10 8 33 33 H 1.08992 * 109.47647 * 180.02562 * 14 12 10 34 34 H 1.09007 * 109.47073 * 300.00359 * 14 12 10 35 35 H 1.09005 * 109.47181 * 59.99807 * 14 12 10 36 36 H 0.96994 * 120.00350 * 180.02562 * 18 17 15 37 37 H 1.09002 * 113.61445 * 139.98212 * 23 6 5 38 38 H 1.09002 * 113.61408 * 270.79943 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.2896 2.0968 -0.4044 5 6 2.6139 1.7960 1.3445 6 6 3.7164 2.4918 0.5288 7 1 3.4818 3.5241 0.2693 8 6 5.0950 2.3350 1.1169 9 8 5.8403 1.4765 0.6946 10 7 5.4997 3.1488 2.1121 11 6 4.5997 4.1862 2.6218 12 6 6.8402 2.9967 2.6834 13 1 7.3590 2.1806 2.1805 14 6 6.7257 2.6842 4.1767 15 6 7.6144 4.2759 2.4958 16 1 7.1541 5.1179 2.0002 17 6 8.9102 4.3714 2.9569 18 7 9.4709 3.3460 3.5599 19 14 9.8701 5.9569 2.7237 20 1 9.6516 6.8444 3.8941 21 1 11.3170 5.6462 2.6015 22 1 9.4046 6.6406 1.4904 23 6 3.4085 1.4888 -0.5955 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8307 -0.5262 0.7814 28 1 2.9750 0.9584 1.9413 29 1 1.9912 2.4856 1.9142 30 1 4.0053 3.7810 3.4408 31 1 5.1862 5.0313 2.9820 32 1 3.9376 4.5179 1.8220 33 1 7.7229 2.5715 4.6019 34 1 6.2066 3.5001 4.6799 35 1 6.1656 1.7589 4.3124 36 1 10.3824 3.4132 3.8846 37 1 3.4271 1.9305 -1.5918 38 1 3.9879 0.5679 -0.5298 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693594518.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:13 Heat of formation + Delta-G solvation = -36.458889 kcal Electronic energy + Delta-G solvation = -17777.490439 eV Core-core repulsion = 15040.688204 eV Total energy + Delta-G solvation = -2736.802234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36623 -39.13897 -37.06035 -35.00299 -34.56687 -31.44304 -27.70106 -27.38740 -27.21796 -26.57681 -24.99316 -22.69761 -20.95062 -19.62264 -18.53119 -18.00103 -17.25627 -16.74281 -16.38538 -16.09478 -15.45085 -15.11942 -14.54821 -14.39808 -14.18332 -13.86789 -13.56737 -13.45624 -13.09502 -12.92960 -12.88858 -12.73005 -12.68238 -12.62442 -12.22224 -12.13185 -12.00538 -11.66774 -11.41755 -11.19393 -10.59943 -10.39328 -9.30992 -9.27332 -8.15259 -6.32350 1.40381 1.42450 1.52348 1.82765 2.33555 2.52049 3.12419 3.31448 3.51653 3.67816 3.92093 3.94239 4.12605 4.42866 4.57445 4.62909 4.73537 4.74533 4.76884 4.77954 4.84165 4.88053 5.01671 5.04731 5.08312 5.10616 5.15641 5.35324 5.46897 5.61333 5.67294 6.04611 6.16061 6.17319 6.44019 6.76167 6.88282 7.32935 7.52493 8.89203 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049612 B = 0.005156 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.240813 B = 5428.996695 C = 5462.212169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.700 5.700 3 C 0.084 3.916 4 H 0.124 0.876 5 C -0.136 4.136 6 C -0.130 4.130 7 H 0.137 0.863 8 C 0.500 3.500 9 O -0.609 6.609 10 N -0.600 5.600 11 C 0.083 3.917 12 C 0.259 3.741 13 H 0.004 0.996 14 C -0.129 4.129 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.270 1.270 23 C -0.114 4.114 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.344 0.656 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.703 0.857 -2.986 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.330 5.330 3 C -0.027 4.027 4 H 0.141 0.859 5 C -0.176 4.176 6 C -0.151 4.151 7 H 0.155 0.845 8 C 0.290 3.710 9 O -0.492 6.492 10 N -0.329 5.329 11 C -0.060 4.060 12 C 0.157 3.843 13 H 0.022 0.978 14 C -0.188 4.188 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.186 4.186 18 N -0.558 5.558 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.153 4.153 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.163 0.837 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.130 0.293 -3.774 18.521 hybrid contribution 1.159 0.690 0.985 1.670 sum -16.971 0.983 -2.789 17.227 Atomic orbital electron populations 1.22274 0.86427 1.02490 1.00961 1.60325 1.09106 1.13314 1.50233 1.23003 0.94836 0.90429 0.94387 0.85860 1.23549 0.95839 1.00487 0.97686 1.22677 0.90245 1.02649 0.99555 0.84538 1.21301 0.89816 0.80493 0.79407 1.90600 1.57992 1.37658 1.62976 1.48247 1.16163 1.33119 1.35396 1.21825 0.93224 0.90873 1.00048 1.18517 0.79148 0.95909 0.90773 0.97789 1.21846 1.01566 0.97448 0.97954 1.21589 0.98750 0.99202 1.38207 0.92020 1.25774 0.98324 0.99973 0.94546 1.70030 1.14522 1.31809 1.39419 0.85423 0.77345 0.79211 0.78835 1.19126 1.21190 1.19479 1.22958 0.96730 0.98138 0.97429 0.95027 0.91175 0.90973 0.83706 0.91426 0.88111 0.91842 0.91548 0.89047 0.91526 0.93447 0.96383 0.92650 0.90403 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.54 127.69 1.35 1.73 16 2 N -0.70 -13.87 6.97 -511.52 -3.57 -17.44 16 3 C 0.08 1.66 4.19 45.51 0.19 1.85 16 4 H 0.12 1.85 7.87 -2.39 -0.02 1.83 16 5 C -0.14 -2.96 7.23 31.18 0.23 -2.73 16 6 C -0.13 -3.64 2.96 -11.01 -0.03 -3.67 16 7 H 0.14 3.02 6.94 -2.39 -0.02 3.00 16 8 C 0.50 21.21 7.21 87.66 0.63 21.84 16 9 O -0.61 -32.47 15.23 -3.02 -0.05 -32.51 16 10 N -0.60 -25.84 2.75 -826.82 -2.28 -28.11 16 11 C 0.08 2.58 9.24 127.77 1.18 3.76 16 12 C 0.26 13.88 2.64 44.24 0.12 14.00 16 13 H 0.00 0.27 6.90 -2.39 -0.02 0.25 16 14 C -0.13 -6.42 8.97 71.98 0.65 -5.77 16 15 C -0.54 -29.86 7.99 25.60 0.20 -29.66 16 16 H 0.06 3.30 7.33 -2.91 -0.02 3.28 16 17 C 0.01 0.74 5.30 84.65 0.45 1.19 16 18 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 19 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.11 -3.12 7.20 31.12 0.22 -2.89 16 24 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.07 0.90 8.13 -2.38 -0.02 0.88 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.34 6.92 8.28 -89.69 -0.74 6.18 16 28 H 0.07 1.74 7.78 -2.39 -0.02 1.72 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 2.25 7.02 -2.39 -0.02 2.24 16 32 H 0.09 2.14 6.22 -2.39 -0.01 2.12 16 33 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 34 H 0.05 2.11 7.67 -2.38 -0.02 2.10 16 35 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.23 7.43 -2.39 -0.02 2.21 16 Total: -1.00 -71.74 305.40 1.86 -69.89 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.30 Total: 16.75 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.18 Total: -0.36 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -5.60 Total: -99.28 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.51 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.74 1.86 -69.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693594518.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.426 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds