Wall clock time and date at job start Mon Mar 30 2020 03:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99539 * 2 1 4 4 H 1.08994 * 112.85446 * 336.18819 * 3 2 1 5 5 C 1.53953 * 113.74358 * 107.40114 * 3 2 1 6 6 C 1.53786 * 87.02288 * 139.94203 * 5 3 2 7 7 H 1.08996 * 113.61717 * 89.22625 * 6 5 3 8 8 C 1.50697 * 113.61237 * 220.05243 * 6 5 3 9 9 O 1.21274 * 120.00844 * 99.13446 * 8 6 5 10 10 N 1.34781 * 119.99418 * 279.12721 * 8 6 5 11 11 C 1.46500 * 120.00252 * 0.02562 * 10 8 6 12 12 C 1.46500 * 119.99819 * 180.02562 * 10 8 6 13 13 H 1.09002 * 109.47129 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47473 * 120.00094 * 12 10 8 15 15 C 1.50708 * 109.47008 * 240.00262 * 12 10 8 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46680 * 60.00159 * 19 17 15 21 21 H 1.48492 * 109.47298 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46944 * 300.00675 * 19 17 15 23 23 C 1.53787 * 113.61090 * 204.99781 * 3 2 1 24 24 H 1.08997 * 109.47689 * 300.00567 * 1 2 3 25 25 H 1.09007 * 109.46973 * 60.00898 * 1 2 3 26 26 H 1.09004 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.00906 * 110.99554 * 123.94596 * 2 1 3 28 28 H 1.09001 * 113.61589 * 25.41868 * 5 3 2 29 29 H 1.09000 * 113.66163 * 254.46366 * 5 3 2 30 30 H 1.08994 * 109.47032 * 269.99966 * 11 10 8 31 31 H 1.08998 * 109.46624 * 29.99760 * 11 10 8 32 32 H 1.08998 * 109.46783 * 149.99505 * 11 10 8 33 33 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 34 34 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 35 35 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 36 36 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 37 37 H 1.08996 * 113.61549 * 105.38385 * 23 3 2 38 38 H 1.08996 * 113.69060 * 334.48957 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 1 1.2891 2.0959 -0.4055 5 6 2.6109 1.7992 1.3447 6 6 3.7129 2.4943 0.5277 7 1 3.4775 3.5259 0.2660 8 6 5.0905 2.3402 1.1186 9 8 5.8479 1.5003 0.6807 10 7 5.4811 3.1360 2.1339 11 6 4.5662 4.1503 2.6633 12 6 6.8206 2.9866 2.7080 13 1 7.3513 2.1882 2.1894 14 6 7.5922 4.2984 2.5508 15 6 6.7047 2.6443 4.1711 16 1 5.7307 2.5480 4.6277 17 6 7.8421 2.4539 4.9268 18 7 9.0282 2.5716 4.3710 19 14 7.6985 2.0302 6.7404 20 1 6.9489 0.7575 6.8935 21 1 9.0562 1.8787 7.3224 22 1 6.9760 3.1183 7.4472 23 6 3.4084 1.4889 -0.5955 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5261 0.7815 28 1 2.9730 0.9641 1.9445 29 1 1.9865 2.4896 1.9117 30 1 4.7050 5.0843 2.1190 31 1 3.5378 3.8096 2.5440 32 1 4.7752 4.3115 3.7209 33 1 7.0614 5.0966 3.0697 34 1 7.6760 4.5460 1.4926 35 1 8.5887 4.1874 2.9784 36 1 9.8285 2.4380 4.9027 37 1 3.4269 1.9292 -1.5924 38 1 3.9899 0.5695 -0.5279 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693594525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:16 Heat of formation + Delta-G solvation = -15.105169 kcal Electronic energy + Delta-G solvation = -17822.544784 eV Core-core repulsion = 15086.668516 eV Total energy + Delta-G solvation = -2735.876267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00775 -37.76163 -35.24423 -33.91500 -32.73556 -29.51097 -26.49458 -25.96791 -25.52254 -25.20191 -23.88874 -21.10347 -19.62822 -18.15621 -16.78226 -16.18313 -15.86551 -15.45300 -14.88359 -14.62829 -14.07327 -13.81209 -13.59756 -12.86245 -12.48000 -12.37827 -12.32769 -12.08115 -11.81333 -11.56001 -11.43035 -11.07031 -10.87785 -10.84773 -10.79194 -10.58598 -10.35554 -10.24170 -10.14298 -9.16350 -8.82726 -8.44380 -8.38116 -7.53276 -6.05776 -4.13948 3.27608 3.32955 3.33837 3.42153 3.94607 4.24587 4.41740 4.60313 4.78421 4.93662 4.99184 5.23130 5.24924 5.36518 5.42788 5.56071 5.67988 5.71509 5.85927 5.92398 6.05705 6.10400 6.21696 6.39364 6.44800 6.77969 6.86677 7.01110 7.09796 7.27511 7.47725 7.56923 7.73982 8.04371 8.22753 8.59461 8.85344 9.13275 9.52620 10.99435 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031089 B = 0.005901 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.416515 B = 4743.702029 C = 5120.983092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.684 5.684 3 C 0.064 3.936 4 H 0.096 0.904 5 C -0.148 4.148 6 C -0.135 4.135 7 H 0.105 0.895 8 C 0.513 3.487 9 O -0.552 6.552 10 N -0.592 5.592 11 C 0.085 3.915 12 C 0.257 3.743 13 H 0.062 0.938 14 C -0.145 4.145 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.103 4.103 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.346 0.654 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.093 0.907 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 1.354 -5.485 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.314 5.314 3 C -0.046 4.046 4 H 0.114 0.886 5 C -0.187 4.187 6 C -0.157 4.157 7 H 0.123 0.877 8 C 0.299 3.701 9 O -0.431 6.431 10 N -0.323 5.323 11 C -0.059 4.059 12 C 0.156 3.844 13 H 0.080 0.920 14 C -0.204 4.204 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.203 1.203 23 C -0.142 4.142 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.165 0.835 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.029 0.826 -6.332 15.414 hybrid contribution -0.260 0.299 2.089 2.126 sum -14.289 1.126 -4.244 14.948 Atomic orbital electron populations 1.22213 0.88237 1.01650 1.00159 1.60384 1.07391 1.13558 1.50071 1.23121 0.96084 0.89568 0.95866 0.88641 1.23617 0.96907 1.01037 0.97180 1.22568 0.93794 1.00549 0.98810 0.87722 1.20188 0.88084 0.81482 0.80299 1.90631 1.55079 1.35561 1.61822 1.48211 1.17089 1.33873 1.33138 1.21586 0.92501 0.90999 1.00848 1.18920 0.76996 0.95171 0.93282 0.91979 1.22075 1.03891 0.97687 0.96751 1.21281 0.92785 1.48452 0.93914 0.92406 1.24891 0.95173 0.95074 0.98626 1.69871 0.97416 1.49084 1.36195 0.86564 0.77185 0.78932 0.84732 1.20292 1.21147 1.20277 1.22925 0.94825 0.99684 0.96774 0.96065 0.91871 0.91682 0.83506 0.89351 0.91100 0.94135 0.92771 0.90307 0.95247 0.97068 0.88898 0.92641 0.91333 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.54 60.07 0.63 0.88 16 2 N -0.68 -7.78 6.97 -113.04 -0.79 -8.57 16 3 C 0.06 0.74 4.18 -66.81 -0.28 0.47 16 4 H 0.10 0.97 7.87 -51.93 -0.41 0.56 16 5 C -0.15 -1.91 6.47 -25.83 -0.17 -2.07 16 6 C -0.14 -2.03 2.80 -90.95 -0.25 -2.29 16 7 H 0.10 1.35 7.91 -51.93 -0.41 0.94 16 8 C 0.51 10.75 7.20 -10.98 -0.08 10.68 16 9 O -0.55 -13.91 15.24 5.56 0.08 -13.82 16 10 N -0.59 -12.81 2.75 -175.26 -0.48 -13.29 16 11 C 0.08 1.44 9.13 59.85 0.55 1.99 16 12 C 0.26 6.67 2.64 -69.08 -0.18 6.49 16 13 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 14 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 15 C -0.53 -14.31 7.99 -34.44 -0.28 -14.58 16 16 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 17 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 19 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.10 -1.47 7.20 -25.91 -0.19 -1.65 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.35 3.91 8.29 -39.29 -0.33 3.58 16 28 H 0.09 1.29 7.79 -51.93 -0.40 0.89 16 29 H 0.07 0.79 7.60 -51.93 -0.39 0.40 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.76 5.66 -51.93 -0.29 0.46 16 32 H 0.08 1.43 7.02 -51.93 -0.36 1.07 16 33 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.67 7.45 -51.93 -0.39 1.29 16 LS Contribution 304.27 15.07 4.59 4.59 Total: -1.00 -31.07 304.27 -7.12 -38.18 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.12 Total: 3.18 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -0.01 Total: -1.64 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.64 Total: -46.57 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.07 -7.12 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693594525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.078 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds