Wall clock time and date at job start Mon Mar 30 2020 03:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99539 * 2 1 4 4 H 1.08994 * 112.85446 * 336.18819 * 3 2 1 5 5 C 1.53953 * 113.74358 * 107.40114 * 3 2 1 6 6 C 1.53786 * 87.02288 * 139.94203 * 5 3 2 7 7 H 1.08996 * 113.61717 * 89.22625 * 6 5 3 8 8 C 1.50697 * 113.61237 * 220.05243 * 6 5 3 9 9 O 1.21274 * 120.00844 * 99.13446 * 8 6 5 10 10 N 1.34781 * 119.99418 * 279.12721 * 8 6 5 11 11 C 1.46500 * 120.00252 * 0.02562 * 10 8 6 12 12 C 1.46500 * 119.99819 * 180.02562 * 10 8 6 13 13 H 1.09002 * 109.47129 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47473 * 120.00094 * 12 10 8 15 15 C 1.50708 * 109.47008 * 240.00262 * 12 10 8 16 16 H 1.08000 * 119.99723 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99930 * 179.97438 * 15 12 10 18 18 N 1.31509 * 120.00195 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99968 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46680 * 60.00159 * 19 17 15 21 21 H 1.48492 * 109.47298 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46944 * 300.00675 * 19 17 15 23 23 C 1.53787 * 113.61090 * 204.99781 * 3 2 1 24 24 H 1.08997 * 109.47689 * 300.00567 * 1 2 3 25 25 H 1.09007 * 109.46973 * 60.00898 * 1 2 3 26 26 H 1.09004 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.00906 * 110.99554 * 123.94596 * 2 1 3 28 28 H 1.09001 * 113.61589 * 25.41868 * 5 3 2 29 29 H 1.09000 * 113.66163 * 254.46366 * 5 3 2 30 30 H 1.08994 * 109.47032 * 269.99966 * 11 10 8 31 31 H 1.08998 * 109.46624 * 29.99760 * 11 10 8 32 32 H 1.08998 * 109.46783 * 149.99505 * 11 10 8 33 33 H 1.09002 * 109.47153 * 59.99757 * 14 12 10 34 34 H 1.09001 * 109.46832 * 299.99948 * 14 12 10 35 35 H 1.09004 * 109.47261 * 179.97438 * 14 12 10 36 36 H 0.97006 * 120.00358 * 179.97438 * 18 17 15 37 37 H 1.08996 * 113.61549 * 105.38385 * 23 3 2 38 38 H 1.08996 * 113.69060 * 334.48957 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 1 1.2891 2.0959 -0.4055 5 6 2.6109 1.7992 1.3447 6 6 3.7129 2.4943 0.5277 7 1 3.4775 3.5259 0.2660 8 6 5.0905 2.3402 1.1186 9 8 5.8479 1.5003 0.6807 10 7 5.4811 3.1360 2.1339 11 6 4.5662 4.1503 2.6633 12 6 6.8206 2.9866 2.7080 13 1 7.3513 2.1882 2.1894 14 6 7.5922 4.2984 2.5508 15 6 6.7047 2.6443 4.1711 16 1 5.7307 2.5480 4.6277 17 6 7.8421 2.4539 4.9268 18 7 9.0282 2.5716 4.3710 19 14 7.6985 2.0302 6.7404 20 1 6.9489 0.7575 6.8935 21 1 9.0562 1.8787 7.3224 22 1 6.9760 3.1183 7.4472 23 6 3.4084 1.4889 -0.5955 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8306 -0.5261 0.7815 28 1 2.9730 0.9641 1.9445 29 1 1.9865 2.4896 1.9117 30 1 4.7050 5.0843 2.1190 31 1 3.5378 3.8096 2.5440 32 1 4.7752 4.3115 3.7209 33 1 7.0614 5.0966 3.0697 34 1 7.6760 4.5460 1.4926 35 1 8.5887 4.1874 2.9784 36 1 9.8285 2.4380 4.9027 37 1 3.4269 1.9292 -1.5924 38 1 3.9899 0.5695 -0.5279 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693594525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:16 Heat of formation + Delta-G solvation = -37.128897 kcal Electronic energy + Delta-G solvation = -17823.499804 eV Core-core repulsion = 15086.668516 eV Total energy + Delta-G solvation = -2736.831288 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.37769 -39.13542 -37.06375 -35.01256 -34.56417 -31.43213 -27.71662 -27.38675 -27.21494 -26.59516 -24.99066 -22.69731 -20.88180 -19.68898 -18.57062 -17.91823 -17.25966 -16.77271 -16.35589 -16.13352 -15.48559 -15.05369 -14.61854 -14.42140 -14.14538 -13.86975 -13.54682 -13.48372 -13.06842 -12.97869 -12.78389 -12.74433 -12.70649 -12.61304 -12.20221 -12.12978 -12.01801 -11.72687 -11.42263 -11.19873 -10.59772 -10.39837 -9.30001 -9.28965 -8.14865 -6.32027 1.40351 1.42935 1.50483 1.82337 2.32873 2.52110 3.12653 3.30712 3.51481 3.67409 3.91002 3.93594 4.15663 4.49431 4.51111 4.59503 4.73064 4.74886 4.76617 4.77517 4.83238 4.88794 5.00939 5.04193 5.08471 5.09437 5.15951 5.35457 5.46784 5.62043 5.67412 6.04681 6.16126 6.17211 6.41768 6.76055 6.88248 7.32962 7.52377 8.89343 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031089 B = 0.005901 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.416515 B = 4743.702029 C = 5120.983092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.700 5.700 3 C 0.084 3.916 4 H 0.126 0.874 5 C -0.142 4.142 6 C -0.128 4.128 7 H 0.140 0.860 8 C 0.500 3.500 9 O -0.609 6.609 10 N -0.600 5.600 11 C 0.081 3.919 12 C 0.259 3.741 13 H 0.004 0.996 14 C -0.131 4.131 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.014 3.986 18 N -0.919 5.919 19 Si 0.966 3.034 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.261 1.261 23 C -0.112 4.112 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.343 0.657 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.018 0.982 35 H 0.066 0.934 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 2.662 -4.924 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.330 5.330 3 C -0.026 4.026 4 H 0.143 0.857 5 C -0.181 4.181 6 C -0.149 4.149 7 H 0.158 0.842 8 C 0.290 3.710 9 O -0.492 6.492 10 N -0.330 5.330 11 C -0.061 4.061 12 C 0.157 3.843 13 H 0.022 0.978 14 C -0.189 4.189 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.791 3.209 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.186 1.186 23 C -0.151 4.151 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.116 2.163 -5.769 18.191 hybrid contribution 0.705 -0.149 1.851 1.987 sum -16.411 2.014 -3.918 16.992 Atomic orbital electron populations 1.22278 0.86422 1.02483 1.00985 1.60347 1.09128 1.13369 1.50153 1.23022 0.94992 0.90409 0.94195 0.85658 1.23594 0.96157 1.00539 0.97817 1.22683 0.90096 1.02813 0.99322 0.84219 1.21334 0.89980 0.80122 0.79603 1.90599 1.57300 1.37831 1.63461 1.48243 1.16252 1.35102 1.33377 1.21839 0.93278 0.90816 1.00172 1.18518 0.79380 0.94001 0.92445 0.97798 1.21856 1.02429 0.97454 0.97185 1.21542 0.93021 1.48567 0.94548 0.92080 1.25766 0.94774 0.94847 1.03197 1.70024 0.98104 1.49784 1.37835 0.85494 0.77257 0.78870 0.79297 1.20303 1.20912 1.18550 1.22938 0.96558 0.98060 0.97522 0.95125 0.90984 0.91029 0.83831 0.91803 0.88124 0.91736 0.89129 0.91536 0.93415 0.96312 0.91492 0.92649 0.90002 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.54 127.69 1.35 1.75 16 2 N -0.70 -14.50 6.97 -511.55 -3.57 -18.07 16 3 C 0.08 1.71 4.18 45.50 0.19 1.90 16 4 H 0.13 1.88 7.87 -2.39 -0.02 1.86 16 5 C -0.14 -3.25 6.47 31.18 0.20 -3.05 16 6 C -0.13 -3.57 2.80 -11.01 -0.03 -3.60 16 7 H 0.14 2.97 7.91 -2.39 -0.02 2.95 16 8 C 0.50 21.21 7.20 87.66 0.63 21.84 16 9 O -0.61 -32.46 15.24 -3.01 -0.05 -32.51 16 10 N -0.60 -25.88 2.75 -826.80 -2.28 -28.15 16 11 C 0.08 2.54 9.13 127.77 1.17 3.71 16 12 C 0.26 13.88 2.64 44.25 0.12 14.00 16 13 H 0.00 0.26 6.90 -2.39 -0.02 0.24 16 14 C -0.13 -6.48 8.97 71.98 0.65 -5.84 16 15 C -0.54 -29.73 7.99 25.60 0.20 -29.53 16 16 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 17 C 0.01 0.76 5.30 84.65 0.45 1.21 16 18 N -0.92 -53.93 11.32 21.44 0.24 -53.68 16 19 Si 0.97 43.36 29.54 68.60 2.03 45.38 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 C -0.11 -3.05 7.20 31.13 0.22 -2.83 16 24 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 0.95 8.13 -2.38 -0.02 0.93 16 26 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.34 7.42 8.29 -89.69 -0.74 6.68 16 28 H 0.06 1.81 7.79 -2.39 -0.02 1.79 16 29 H 0.10 1.74 7.60 -2.39 -0.02 1.73 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 2.15 5.66 -2.39 -0.01 2.14 16 32 H 0.07 2.27 7.02 -2.39 -0.02 2.25 16 33 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 3.68 6.07 -2.38 -0.01 3.66 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.06 2.19 7.45 -2.39 -0.02 2.17 16 Total: -1.00 -71.56 304.27 1.82 -69.74 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.30 Total: 17.72 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.14 Total: -0.44 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -5.60 Total: -99.90 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.05 Total: -32.51 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -71.56 1.82 -69.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693594525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.611 kcal (2) G-P(sol) polarization free energy of solvation -71.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds