Wall clock time and date at job start Mon Mar 30 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47637 * 2 1 4 4 C 1.50698 * 109.46955 * 240.00336 * 2 1 3 5 5 H 1.07999 * 120.00275 * 240.00335 * 4 2 1 6 6 C 1.37875 * 120.00236 * 59.99810 * 4 2 1 7 7 N 1.31513 * 120.00073 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00146 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46999 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.46999 * 120.00172 * 8 6 4 11 11 H 1.48498 * 109.47058 * 239.99772 * 8 6 4 12 12 N 1.46501 * 109.47271 * 120.00244 * 2 1 3 13 13 C 1.34770 * 119.99763 * 274.99778 * 12 2 1 14 14 O 1.21279 * 120.00262 * 359.97438 * 13 12 2 15 15 C 1.50708 * 119.99818 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47178 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46350 * 54.99912 * 16 15 13 18 18 C 1.53037 * 109.45250 * 174.97162 * 16 15 13 19 19 C 1.53118 * 109.27892 * 179.18844 * 18 16 15 20 20 C 1.53124 * 109.16008 * 302.34916 * 19 18 16 21 21 C 1.53036 * 109.27759 * 57.65133 * 20 19 18 22 22 N 1.46843 * 109.52504 * 300.82003 * 21 20 19 23 23 H 1.09003 * 109.47298 * 59.99553 * 1 2 3 24 24 H 1.08998 * 109.47637 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47020 * 300.00129 * 1 2 3 26 26 H 0.97001 * 120.00555 * 180.02562 * 7 6 4 27 27 H 0.97003 * 119.99514 * 94.99715 * 12 2 1 28 28 H 1.09000 * 109.47077 * 59.99607 * 15 13 12 29 29 H 1.08997 * 109.47064 * 300.00372 * 15 13 12 30 30 H 1.08996 * 109.50651 * 299.13109 * 18 16 15 31 31 H 1.09001 * 109.50257 * 59.24953 * 18 16 15 32 32 H 1.08997 * 109.52579 * 182.44041 * 19 18 16 33 33 H 1.09000 * 109.52350 * 62.24885 * 19 18 16 34 34 H 1.08994 * 109.50502 * 297.71059 * 20 19 18 35 35 H 1.09004 * 109.50104 * 177.59657 * 20 19 18 36 36 H 1.09001 * 109.46076 * 180.80414 * 21 20 19 37 37 H 1.09001 * 109.46079 * 60.83975 * 21 20 19 38 38 H 1.00898 * 110.99889 * 185.83859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5865 -4.8161 11 1 3.1464 -0.1872 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3570 14 8 1.8591 1.1585 2.4114 15 6 2.6489 -0.7289 3.5877 16 6 2.7012 0.2543 4.7587 17 1 1.7217 0.7138 4.8911 18 6 3.0901 -0.4941 6.0356 19 6 3.1610 0.4968 7.2008 20 6 4.1692 1.5986 6.8628 21 6 3.7490 2.2863 5.5618 22 7 3.6967 1.2967 4.4782 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7087 1.1615 -3.4843 27 1 2.2490 -1.6319 1.1525 28 1 3.6480 -1.1216 3.3985 29 1 1.9760 -1.5507 3.8325 30 1 2.3428 -1.2574 6.2521 31 1 4.0634 -0.9654 5.8991 32 1 3.4799 -0.0244 8.1034 33 1 2.1782 0.9396 7.3626 34 1 5.1595 1.1603 6.7392 35 1 4.1928 2.3305 7.6703 36 1 4.4726 3.0619 5.3108 37 1 2.7645 2.7363 5.6906 38 1 3.5146 1.7413 3.5910 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694425334.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:17 Heat of formation + Delta-G solvation = -63.007047 kcal Electronic energy + Delta-G solvation = -17574.303982 eV Core-core repulsion = 14836.350533 eV Total energy + Delta-G solvation = -2737.953449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45950 -37.88815 -34.81027 -32.60042 -32.31716 -31.67443 -29.21926 -27.05591 -25.24635 -23.50283 -22.27261 -20.71726 -19.56499 -19.34693 -17.00877 -16.32749 -15.51701 -15.34064 -15.20017 -14.38439 -14.13726 -13.96849 -13.47857 -13.24364 -12.94953 -12.48973 -12.30234 -12.10793 -11.75701 -11.50178 -11.08945 -10.97290 -10.90852 -10.80794 -10.73675 -10.44162 -10.33857 -10.26441 -10.23814 -9.04333 -8.95394 -8.54972 -8.19736 -7.88055 -6.12095 -4.21214 3.23920 3.31727 3.34502 3.42647 4.10884 4.37247 4.41855 4.83004 4.89321 4.97139 5.20112 5.25009 5.29933 5.48103 5.58631 5.63350 5.69720 5.85788 5.89115 5.90472 5.96004 6.01081 6.14430 6.22270 6.42329 6.82300 6.96115 7.15593 7.29527 7.45502 7.56846 7.69941 7.74196 7.92242 8.15562 8.68682 8.78945 9.14914 9.46672 10.93934 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050837 B = 0.004609 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.646790 B = 6073.046383 C = 6109.815004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.503 3.497 14 O -0.563 6.563 15 C -0.141 4.141 16 C 0.106 3.894 17 H 0.044 0.956 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.059 3.941 22 N -0.688 5.688 23 H 0.089 0.911 24 H 0.025 0.975 25 H 0.013 0.987 26 H 0.263 0.737 27 H 0.389 0.611 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -2.934 15.418 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.288 3.712 14 O -0.444 6.444 15 C -0.181 4.181 16 C -0.005 4.005 17 H 0.062 0.938 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.071 4.071 22 N -0.324 5.324 23 H 0.108 0.892 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.221 0.779 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.205 -2.332 15.492 16.221 hybrid contribution -0.483 -0.443 -1.116 1.295 sum 3.722 -2.775 14.375 15.106 Atomic orbital electron populations 1.22070 0.98567 0.99033 1.00819 1.18734 0.90946 0.94014 0.80199 0.93404 1.21267 1.32307 1.13179 0.90358 0.92032 1.24894 0.94815 0.94950 0.99085 1.69912 1.35996 1.22505 1.23748 0.86395 0.78595 0.79546 0.82575 1.19719 1.20895 1.20870 1.46542 1.64773 1.13574 1.10635 1.20517 0.78137 0.87568 0.84974 1.90577 1.52096 1.16407 1.85315 1.21818 1.03297 0.99252 0.93760 1.21116 0.94081 0.92205 0.93067 0.93843 1.21651 1.02005 0.97556 0.93902 1.21558 0.99376 0.97018 0.97827 1.21599 0.99616 0.97724 0.96572 1.21834 0.99452 0.93989 0.91807 1.60452 1.50683 1.14989 1.06314 0.89206 0.95538 0.96757 0.92657 0.77892 0.88587 0.89156 0.91820 0.91165 0.92103 0.92413 0.91334 0.92127 0.91192 0.95474 0.81675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.71 -14.67 5.07 -54.93 -0.28 -14.95 16 13 C 0.50 9.81 7.50 -10.98 -0.08 9.73 16 14 O -0.56 -12.97 13.85 5.56 0.08 -12.90 16 15 C -0.14 -2.02 5.38 -27.88 -0.15 -2.17 16 16 C 0.11 1.50 2.10 -67.73 -0.14 1.36 16 17 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 18 C -0.11 -1.26 5.37 -26.65 -0.14 -1.40 16 19 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 20 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 21 C 0.06 0.76 6.55 -3.84 -0.03 0.73 16 22 N -0.69 -10.40 6.50 -106.77 -0.69 -11.10 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.36 6.39 6.52 -39.29 -0.26 6.13 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -29.62 302.87 -8.16 -37.78 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.34 Total: 9.46 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -1.09 Total: -4.14 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.35 Total: -50.45 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.62 -8.16 -37.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694425334.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.228 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds